Rh7BG161300

late blight resistance protein homolog R1B-19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000998
Physical Location & Seq
Reverse (-)
12454793 .. 12456739
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG161300.1

Sequence Viewer

Length: 411 bp
ATGAAGAAGGTGGTACTGAAACTTGATTTGCACGATGACAAGGAGAAGCAGAAGGCGTTGAAAGCAGTGTCTGGCCTTTCTGGCATTGATTCCATTGCTATGGACATGAAAGAGAGGAAGTTAACTGTGACTGGCAATATTGATCCGGTTGATGTGGTGAACAAGTTGCGGAAAGGTAACTGGCACACTGAGATTTTGACAGTTGGGCCGGCGAAAGAAGAGAAGAAGGATGATAAGAAAGATGGAGGAGCTAAGAAAGATGATGGCAAGAAAGATGATGACAAGAAGAAGGACCCGAATCAGCAAATTGCTGAGCTTGTGCGAGCCTATCAAAACTATAATCCGCAGATGACGAGGTACTATCATGTGCAGAGCGCAGAAGAGAACCCAAATGCTTGTGTTATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

136

Amino Acids

15.34

Weight (kDa)

8.81

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 9 - 58 2.2e-09 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 169, 344
AclWI GGATC 1 cut(s) 137
AfaI GTAC 2 cut(s) 15, 359
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 2 cut(s) 251, 316
AluI AGCT 2 cut(s) 251, 316
AlwI GGATC 1 cut(s) 137
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 2 cut(s) 73, 206
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 2 cut(s) 206, 292
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 292
BccI CCATC 2 cut(s) 236, 257
BglI GCCNNNNNGGC 1 cut(s) 81
BlpI GCTNAGC 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 206, 292
BmiI GGNNCC 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 312
BsaWI WCCGGW 1 cut(s) 145
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 2 cut(s) 136, 185
Bse3DI GCAATG 1 cut(s) 93
BseGI GGATG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 180, 303
BseNI ACTGG 2 cut(s) 136, 185
BseRI GAGGAG 1 cut(s) 261
BsgI GTGCAG 1 cut(s) 389
BshFI GGCC 2 cut(s) 75, 208
BsiSI CCGG 2 cut(s) 146, 209
BsnI GGCC 2 cut(s) 75, 208
Bsp143I GATC 1 cut(s) 142
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 2 cut(s) 169, 344
BspANI GGCC 2 cut(s) 75, 208
BspCNI CTCAG 2 cut(s) 181, 304
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 2 cut(s) 136, 185
BssAI RCCGGY 1 cut(s) 208
BssMI GATC 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 127, 202
Bst6I CTCTTC 2 cut(s) 213, 375
BstC8I GCNNGC 2 cut(s) 210, 324
BstDEI CTNAG 3 cut(s) 189, 252, 312
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 62, 81
BstXI CCANNNNNNTGG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 75, 208
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 186
Cac8I GCNNGC 2 cut(s) 210, 324
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 377
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 206, 292
Csp6I GTAC 2 cut(s) 14, 358
CviAII CATG 2 cut(s) 106, 365
CviJI RGCY 5 cut(s) 75, 208, 251, 316, 326
CviKI_1 RGCY 5 cut(s) 75, 208, 251, 316, 326
CviQI GTAC 2 cut(s) 14, 358
DdeI CTNAG 3 cut(s) 189, 252, 312
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 213, 375
EarI CTCTTC 2 cut(s) 213, 375
Eco47I GGWCC 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 292
FaeI CATG 2 cut(s) 109, 368
FaiI YATR 4 cut(s) 101, 107, 339, 366
FatI CATG 2 cut(s) 105, 364
FokI GGATG 1 cut(s) 242
GlaI GCGC 1 cut(s) 376
HaeIII GGCC 2 cut(s) 75, 208
HapII CCGG 2 cut(s) 146, 209
HhaI GCGC 1 cut(s) 377
Hin1II CATG 2 cut(s) 109, 368
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HinfI GANTC 2 cut(s) 89, 298
HpaI GTTAAC 1 cut(s) 123
HpaII CCGG 2 cut(s) 146, 209
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 2 cut(s) 123, 160
Hpy8I GTNNAC 2 cut(s) 123, 160
HpyAV CCTTC 3 cut(s) 46, 220, 283
HpyCH4III ACNGT 2 cut(s) 127, 202
HpyCH4V TGCA 2 cut(s) 31, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 81
HpyF3I CTNAG 3 cut(s) 189, 252, 312
Hsp92II CATG 2 cut(s) 109, 368
HspAI GCGC 1 cut(s) 375
KroI GCCGGC 1 cut(s) 208
KroNI GCCGGC 1 cut(s) 210
KspAI GTTAAC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 6 cut(s) 57, 66, 117, 159, 166, 222
MaeIII GTNAC 2 cut(s) 127, 176
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 5 cut(s) 16, 230, 235, 298, 392
MluCI AATT 1 cut(s) 306
MnlI CCTC 3 cut(s) 108, 239, 348
MroNI GCCGGC 1 cut(s) 208
MseI TTAA 2 cut(s) 122, 409
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 2 cut(s) 146, 209
MwoI GCNNNNNNNGC 2 cut(s) 62, 81
NaeI GCCGGC 1 cut(s) 210
NdeII GATC 1 cut(s) 142
NgoMIV GCCGGC 1 cut(s) 208
NlaIII CATG 2 cut(s) 109, 368
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 127
PdiI GCCGGC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 89, 298
PpuMI RGGWCCY 1 cut(s) 292
Psp5II RGGWCCY 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 2 cut(s) 206, 292
PspPPI RGGWCCY 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 71
RsaI GTAC 2 cut(s) 15, 359
RsaNI GTAC 2 cut(s) 14, 358
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 2 cut(s) 122, 409
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 2 cut(s) 206, 292
SetI ASST 5 cut(s) 12, 178, 253, 318, 359
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 1 cut(s) 306
SsiI CCGC 2 cut(s) 169, 344
SspI AATATT 1 cut(s) 139
TaaI ACNGT 2 cut(s) 127, 202
TasI AATT 1 cut(s) 306
TfiI GAWTC 2 cut(s) 89, 298
Tru1I TTAA 2 cut(s) 122, 409
Tru9I TTAA 2 cut(s) 122, 409
TscAI CASTG 2 cut(s) 72, 193
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 17, 122
TspRI CASTG 2 cut(s) 72, 193
VpaK11BI GGWCC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.