AT1G18600

serine-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001329
Physical Location & Seq
Forward (+)
6400282 .. 6402794
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18600.1

Sequence Viewer

Length: 1011 bp
ATGAAGGCGATCTTCAACCGTAGAGTTGTCGTCGACTCATCTTCGCGTCTCACCAAGCTGCTCGCGAATCCAACTACTCATTCTCACCTGAATCGTCAAACTTTCACTTCTCTCTATAAACCAAACCAGAGCCGCCATTTTCGAACACACTATCTTCCTTCAAGCCCGTCGTCTCCTCCCGTGAGCCGCTTTGACCCTTCTCAGCTATGGCGATCGGAGAAAATTCGTGGGTTTTTCGCGAGCGCTTTAGGGAACAAAGCTGTGAAATTGGGAAATCTCGTGGAATCCAGAGTTGGGTTCATTGGTTCTCAGTTTCCCAAAAAGGGTTTCGAATTCCAGAGGTTTTCTGGGTTTCAAAGGCGTGGCTGGAAGCATTGGCTTCAAGGGTTATCAGATCGTGACGTTGTTCTTGGGTTAGTTATAGCTAATGCTGGTGTGTTTGTGATGTGGCGTGTTTTCAATCAACAATTCATGATGAATAACTTCATGATATCGTTGGATAATTTCAAGAGTGGGCGTCTACACACTCTGATAACTTCAGCATTCAGTCATATTGATATTGGACATATCGTCTCAAACATGATTGGACTCTACTTTTTTGGAACCAGTATCGCTAGAAACTTTGGTCCTCAGTTCCTTTTGAAGCTGTACCTTGCTGGAGCCCTTGGGGGCTCTGTTTTCTACTTGATTCACCATGCTTATATGGCTGCAACATCGCCCAAGGGTCAAGGAGCTTTCGTGAGGGATCCATCGAGAACCCCGGGACTGGGCGCGAGTGGAGCCGTGAATGCCATCATGCTGCTCGATATCTTCCTGCACCCAAGAGCTACTCTATACTTGGAATTTTTCATTCCAGTTCCGGCAATGTTGCTTGGTATCTTTCTCATAGGAAAAGACATTTTAAGGATAACAGAGGGGAACAGTAACATATCAGGTTCAGCTCATTTGGGAGGAGCTGCAGTTGCAGCCATCGCCTGGGCTCGGATTAGGAAAGGCCGTTTCCGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid

Protein Analysis

336

Amino Acids

37.44

Weight (kDa)

11.28

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 172 - 326 1.4e-26 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 975
AccI GTMKAC 2 cut(s) 33, 520
AccII CGCG 4 cut(s) 46, 65, 239, 773
AciI CCGC 3 cut(s) 133, 187, 1003
AclWI GGATC 2 cut(s) 740, 753
AcsI RAATTY 3 cut(s) 222, 332, 842
AcuI CTGAAG 1 cut(s) 522
AcyI GRCGYC 1 cut(s) 517
AfaI GTAC 1 cut(s) 650
AfeI AGCGCT 1 cut(s) 244
AfiI CCNNNNNNNGG 6 cut(s) 294, 323, 766, 767, 975, 981
AgsI TTSAA 7 cut(s) 16, 162, 356, 383, 460, 508, 643
AhdI GACNNNNNGTC 1 cut(s) 569
AjnI CCWGG 1 cut(s) 974
AjuI GAANNNNNNNTTGG 6 cut(s) 64, 96, 276, 308, 311, 343
AluBI AGCT 9 cut(s) 58, 205, 260, 425, 646, 734, 827, 941, 956
AluI AGCT 9 cut(s) 58, 205, 260, 425, 646, 734, 827, 941, 956
Alw26I GTCTC 3 cut(s) 53, 177, 577
AlwI GGATC 2 cut(s) 740, 753
Ama87I CYCGRG 1 cut(s) 760
Aor51HI AGCGCT 1 cut(s) 244
AoxI GGCC 1 cut(s) 994
ApeKI GCWGC 5 cut(s) 58, 707, 799, 956, 965
ApoI RAATTY 3 cut(s) 222, 332, 842
Asp700I GAANNNNTTC 1 cut(s) 482
AspLEI GCGC 2 cut(s) 245, 773
AspS9I GGNCC 1 cut(s) 626
AsuC2I CCSGG 2 cut(s) 761, 762
AsuHPI GGTGA 3 cut(s) 43, 77, 683
AsuII TTCGAA 2 cut(s) 142, 330
AvaI CYCGRG 1 cut(s) 760
AvaII GGWCC 1 cut(s) 626
BamHI GGATCC 1 cut(s) 745
BanII GRGCYC 3 cut(s) 664, 674, 982
BauI CACGAG 1 cut(s) 278
BbvI GCAGC 5 cut(s) 45, 694, 786, 943, 977
BccI CCATC 3 cut(s) 757, 800, 977
BceAI ACGGC 2 cut(s) 767, 981
BciT130I CCWGG 1 cut(s) 976
BcnI CCSGG 2 cut(s) 761, 762
BcoDI GTCTC 3 cut(s) 53, 177, 577
BfaI CTAG 1 cut(s) 615
BfmI CTRYAG 1 cut(s) 957
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 7 cut(s) 59, 133, 187, 708, 800, 957, 966
BlsI GCNGC 7 cut(s) 60, 134, 188, 709, 801, 958, 967
Bme1390I CCNGG 3 cut(s) 761, 762, 976
Bme18I GGWCC 1 cut(s) 626
BmeRI GACNNNNNGTC 1 cut(s) 569
BmeT110I CYCGRG 1 cut(s) 760
BmgT120I GGNCC 1 cut(s) 626
BmiI GGNNCC 4 cut(s) 604, 661, 747, 781
BmrFI CCNGG 3 cut(s) 761, 762, 976
BmrI ACTGGG 1 cut(s) 776
BmuI ACTGGG 1 cut(s) 776
BpmI CTGGAG 1 cut(s) 678
Bpu14I TTCGAA 2 cut(s) 142, 330
BpuMI CCSGG 2 cut(s) 761, 762
BsaHI GRCGYC 1 cut(s) 517
BsaJI CCNNGG 5 cut(s) 664, 720, 759, 760, 975
BsaXI ACNNNNNCTCC 4 cut(s) 723, 753, 945, 975
Bsc4I CCNNNNNNNGG 6 cut(s) 294, 323, 766, 767, 975, 981
Bse1I ACTGG 3 cut(s) 606, 771, 854
Bse3DI GCAATG 1 cut(s) 870
BseBI CCWGG 1 cut(s) 976
BseDI CCNNGG 5 cut(s) 664, 720, 759, 760, 975
BseLI CCNNNNNNNGG 6 cut(s) 294, 323, 766, 767, 975, 981
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 3 cut(s) 215, 323, 644
BseNI ACTGG 3 cut(s) 606, 771, 854
BseRI GAGGAG 2 cut(s) 165, 966
BseXI GCAGC 5 cut(s) 45, 694, 786, 943, 977
BsgI GTGCAG 1 cut(s) 800
Bsh1236I CGCG 4 cut(s) 46, 65, 239, 773
Bsh1285I CGRYCG 1 cut(s) 215
BshFI GGCC 1 cut(s) 996
BsiEI CGRYCG 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 760
BsiSI CCGG 2 cut(s) 761, 860
BslFI GGGAC 1 cut(s) 777
BslI CCNNNNNNNGG 6 cut(s) 294, 323, 766, 767, 975, 981
BsmAI GTCTC 3 cut(s) 53, 177, 577
BsmBI CGTCTC 3 cut(s) 53, 177, 577
BsmFI GGGAC 1 cut(s) 777
BsmI GAATGC 2 cut(s) 542, 793
BsnI GGCC 1 cut(s) 996
BsoBI CYCGRG 1 cut(s) 760
Bsp119I TTCGAA 2 cut(s) 142, 330
Bsp1286I GDGCHC 3 cut(s) 664, 674, 982
Bsp143I GATC 4 cut(s) 9, 212, 394, 745
Bsp68I TCGCGA 2 cut(s) 65, 239
BspACI CCGC 3 cut(s) 133, 187, 1003
BspANI GGCC 1 cut(s) 996
BspCNI CTCAG 3 cut(s) 214, 322, 643
BspFNI CGCG 4 cut(s) 46, 65, 239, 773
BspHI TCATGA 2 cut(s) 471, 486
BspLI GGNNCC 4 cut(s) 604, 661, 747, 781
BspMAI CTGCAG 1 cut(s) 961
BspPI GGATC 2 cut(s) 740, 753
BspT104I TTCGAA 2 cut(s) 142, 330
BsrDI GCAATG 1 cut(s) 870
BsrI ACTGG 3 cut(s) 606, 771, 854
BssECI CCNNGG 5 cut(s) 664, 720, 759, 760, 975
BssMI GATC 4 cut(s) 9, 212, 394, 745
BssNI GRCGYC 1 cut(s) 517
BssSI CACGAG 1 cut(s) 278
BssT1I CCWWGG 2 cut(s) 664, 720
Bst2BI CACGAG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 976
Bst4CI ACNGT 2 cut(s) 20, 923
BstACI GRCGYC 1 cut(s) 517
BstBI TTCGAA 2 cut(s) 142, 330
BstC8I GCNNGC 2 cut(s) 63, 241
BstDEI CTNAG 3 cut(s) 201, 309, 630
BstFNI CGCG 4 cut(s) 46, 65, 239, 773
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 2 cut(s) 245, 773
BstKTI GATC 4 cut(s) 12, 215, 397, 748
BstMAI GTCTC 3 cut(s) 53, 177, 577
BstMBI GATC 4 cut(s) 9, 212, 394, 745
BstMCI CGRYCG 1 cut(s) 215
BstMWI GCNNNNNNNGC 7 cut(s) 704, 779, 788, 962, 965, 971, 1002
BstNI CCWGG 1 cut(s) 976
BstSCI CCNGG 3 cut(s) 759, 760, 974
BstSFI CTRYAG 1 cut(s) 957
BstUI CGCG 4 cut(s) 46, 65, 239, 773
BstV1I GCAGC 5 cut(s) 45, 694, 786, 943, 977
BstX2I RGATCY 1 cut(s) 745
BstYI RGATCY 1 cut(s) 745
BsuRI GGCC 1 cut(s) 996
BtgZI GCGATG 2 cut(s) 699, 955
BtuMI TCGCGA 2 cut(s) 65, 239
Cac8I GCNNGC 2 cut(s) 63, 241
CciI TCATGA 2 cut(s) 471, 486
CfoI GCGC 2 cut(s) 245, 773
Cfr13I GGNCC 1 cut(s) 626
Cfr9I CCCGGG 1 cut(s) 760
CseI GACGC 2 cut(s) 35, 506
Csp6I GTAC 1 cut(s) 649
CviAII CATG 5 cut(s) 472, 487, 580, 695, 796
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 3 cut(s) 201, 309, 630
DpnI GATC 4 cut(s) 11, 214, 396, 747
DpnII GATC 4 cut(s) 9, 212, 394, 745
DriI GACNNNNNGTC 1 cut(s) 569
Eam1105I GACNNNNNGTC 1 cut(s) 569
Eco130I CCWWGG 2 cut(s) 664, 720
Eco24I GRGCYC 3 cut(s) 664, 674, 982
Eco32I GATATC 2 cut(s) 492, 808
Eco47I GGWCC 1 cut(s) 626
Eco47III AGCGCT 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 760
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 974
EcoRV GATATC 2 cut(s) 492, 808
EcoT14I CCWWGG 2 cut(s) 664, 720
EcoT38I GRGCYC 3 cut(s) 664, 674, 982
ErhI CCWWGG 2 cut(s) 664, 720
Esp3I CGTCTC 3 cut(s) 53, 177, 577
FaeI CATG 5 cut(s) 475, 490, 583, 698, 799
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 1 cut(s) 777
FatI CATG 5 cut(s) 471, 486, 579, 694, 795
FblI GTMKAC 2 cut(s) 33, 520
Fnu4HI GCNGC 7 cut(s) 59, 133, 187, 708, 800, 957, 966
FriOI GRGCYC 3 cut(s) 664, 674, 982
Fsp4HI GCNGC 7 cut(s) 59, 133, 187, 708, 800, 957, 966
FspBI CTAG 1 cut(s) 615
GlaI GCGC 2 cut(s) 244, 772
GluI GCNGC 7 cut(s) 59, 133, 187, 708, 800, 957, 966
GsuI CTGGAG 1 cut(s) 678
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 1 cut(s) 996
HapII CCGG 2 cut(s) 761, 860
HgaI GACGC 2 cut(s) 35, 506
HhaI GCGC 2 cut(s) 245, 773
Hin1I GRCGYC 1 cut(s) 517
Hin1II CATG 5 cut(s) 475, 490, 583, 698, 799
Hin6I GCGC 2 cut(s) 243, 771
HinP1I GCGC 2 cut(s) 243, 771
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 6 cut(s) 35, 67, 91, 284, 588, 688
HpaII CCGG 2 cut(s) 761, 860
HphI GGTGA 3 cut(s) 43, 77, 683
Hpy166II GTNNAC 2 cut(s) 34, 521
Hpy188I TCNGA 4 cut(s) 217, 394, 531, 984
Hpy8I GTNNAC 2 cut(s) 34, 521
Hpy99I CGWCG 2 cut(s) 35, 172
HpyAV CCTTC 2 cut(s) 168, 207
HpyCH4III ACNGT 2 cut(s) 20, 923
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 4 cut(s) 710, 817, 959, 965
HpyF10VI GCNNNNNNNGC 7 cut(s) 704, 779, 788, 962, 965, 971, 1002
HpyF3I CTNAG 3 cut(s) 201, 309, 630
HpySE526I ACGT 1 cut(s) 402
Hsp92I GRCGYC 1 cut(s) 517
Hsp92II CATG 5 cut(s) 475, 490, 583, 698, 799
HspAI GCGC 2 cut(s) 243, 771
Kzo9I GATC 4 cut(s) 9, 212, 394, 745
LmnI GCTCC 4 cut(s) 659, 731, 779, 953
Lsp1109I GCAGC 5 cut(s) 45, 694, 786, 943, 977
MaeI CTAG 1 cut(s) 615
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 2 cut(s) 398, 923
MalI GATC 4 cut(s) 11, 214, 396, 747
MboI GATC 4 cut(s) 9, 212, 394, 745
MboII GAAGA 4 cut(s) 4, 33, 146, 802
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 3 cut(s) 664, 674, 982
MluCI AATT 6 cut(s) 222, 266, 332, 467, 502, 842
MlyI GAGTC 2 cut(s) 29, 582
MmeI TCCRAC 2 cut(s) 95, 477
MnlI CCTC 6 cut(s) 186, 333, 639, 735, 907, 944
MroXI GAANNNNTTC 1 cut(s) 482
MseI TTAA 1 cut(s) 902
MspI CCGG 2 cut(s) 761, 860
MspR9I CCNGG 3 cut(s) 761, 762, 976
Mva1269I GAATGC 2 cut(s) 542, 793
MvaI CCWGG 1 cut(s) 976
MvnI CGCG 4 cut(s) 46, 65, 239, 773
MwoI GCNNNNNNNGC 7 cut(s) 704, 779, 788, 962, 965, 971, 1002
NciI CCSGG 2 cut(s) 761, 762
NdeII GATC 4 cut(s) 9, 212, 394, 745
NlaIII CATG 5 cut(s) 475, 490, 583, 698, 799
NlaIV GGNNCC 4 cut(s) 604, 661, 747, 781
NmuCI GTSAC 1 cut(s) 398
NruI TCGCGA 2 cut(s) 65, 239
NspV TTCGAA 2 cut(s) 142, 330
PagI TCATGA 2 cut(s) 471, 486
PctI GAATGC 2 cut(s) 542, 793
PdmI GAANNNNTTC 1 cut(s) 482
PfeI GAWTC 4 cut(s) 67, 91, 284, 688
PflMI CCANNNNNTGG 1 cut(s) 975
PkrI GCNGC 7 cut(s) 60, 134, 188, 709, 801, 958, 967
Ple19I CGATCG 1 cut(s) 215
PleI GAGTC 2 cut(s) 29, 582
PpsI GAGTC 2 cut(s) 29, 582
Psp6I CCWGG 1 cut(s) 974
PspGI CCWGG 1 cut(s) 974
PspN4I GGNNCC 4 cut(s) 604, 661, 747, 781
PspPI GGNCC 1 cut(s) 626
PstI CTGCAG 1 cut(s) 961
PsuI RGATCY 1 cut(s) 745
PvuI CGATCG 1 cut(s) 215
RruI TCGCGA 2 cut(s) 65, 239
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 902
SatI GCNGC 7 cut(s) 59, 133, 187, 708, 800, 957, 966
Sau3AI GATC 4 cut(s) 9, 212, 394, 745
Sau96I GGNCC 1 cut(s) 626
SchI GAGTC 2 cut(s) 29, 582
ScrFI CCNGG 3 cut(s) 761, 762, 976
SduI GDGCHC 3 cut(s) 664, 674, 982
SfcI CTRYAG 1 cut(s) 957
SfuI TTCGAA 2 cut(s) 142, 330
SinI GGWCC 1 cut(s) 626
SmaI CCCGGG 1 cut(s) 762
Sse9I AATT 6 cut(s) 222, 266, 332, 467, 502, 842
SsiI CCGC 3 cut(s) 133, 187, 1003
SspMI CTAG 1 cut(s) 615
StyD4I CCNGG 3 cut(s) 759, 760, 974
StyI CCWWGG 2 cut(s) 664, 720
TaaI ACNGT 2 cut(s) 20, 923
TaiI ACGT 1 cut(s) 405
TaqI TCGA 5 cut(s) 33, 142, 330, 752, 804
TasI AATT 6 cut(s) 222, 266, 332, 467, 502, 842
TauI GCSGC 2 cut(s) 135, 189
TfiI GAWTC 4 cut(s) 67, 91, 284, 688
Tru1I TTAA 1 cut(s) 902
Tru9I TTAA 1 cut(s) 902
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 5 cut(s) 58, 707, 799, 956, 965
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 6 cut(s) 17, 289, 460, 475, 491, 838
TspMI CCCGGG 1 cut(s) 760
Van91I CCANNNNNTGG 1 cut(s) 975
VpaK11BI GGWCC 1 cut(s) 626
XapI RAATTY 3 cut(s) 222, 332, 842
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmaI CCCGGG 1 cut(s) 760
XmiI GTMKAC 2 cut(s) 33, 520
XmnI GAANNNNTTC 1 cut(s) 482
XspI CTAG 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.