Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Forward (+)

7709069 .. 7712531

Gene Structure 3463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTGGATAGTAGACCCTTTATTCTTGTACCACAATTTTACTACCTCATTATTCAATTTTATGCTTGGAGCCTTGGACACGTTCACACAATGATAACTCCTGCAATTACTCATGCCAGTGCTGGGCATCTCATTTTTAACATGATCGGACTGTGTTATTTTGGAAGGAATATTGGTAGAGTTTTCGGGCCTGAATTTTTGCTGAAGTTGTATATAGCTGGAGCTATTGGTGGCTCAGTCTTTCACTTGGTTCACCATGCCTTCCTGTACCAGACCACTCCGGTACAGCGAAGGAGAGTGGAAATCCGTACGGAACCGGCATTGGGCGCAAGTGGTGCTGTTAATGCTATCATGTTGCTTGATATATTCATCCACCCCGCAGTTCCTGCAGTGCTGCTGGGGATCTTTCTAATCGGGAAGGATATTCCAAGGATCATGGAGGGAAACGCTCATGTCAAGGGATCTACACACTTGGGCGGCGCTGTAGTAGCAGCGGTAACCTGGGCTAGACTTCGGAGGAGGCTTCGGGTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

179

Amino Acids

19.74

Weight (kDa)

10.46

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	27 - 169	4.1e-18	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	13
AciI	CCGC	3 cut(s)	378, 477, 494
AclWI	GGATC	3 cut(s)	410, 440, 469
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	4 cut(s)	30, 269, 285, 310
AfiI	CCNNNNNNNGG	2 cut(s)	123, 323
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	2 cut(s)	218, 224
AluI	AGCT	2 cut(s)	218, 224
AlwI	GGATC	3 cut(s)	410, 440, 469
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	2 cut(s)	394, 491
ApoI	RAATTY	1 cut(s)	194
AspLEI	GCGC	2 cut(s)	329, 482
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	381, 503
BciT130I	CCWGG	1 cut(s)	502
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	2 cut(s)	387, 483
BfoI	RGCGCY	1 cut(s)	483
BisI	GCNGC	3 cut(s)	395, 478, 492
BlsI	GCNGC	3 cut(s)	396, 479, 493
Bme1390I	CCNGG	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	71, 315
BmrFI	CCNGG	1 cut(s)	502
BmsI	GCATC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	73, 428, 501
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 323
Bse118I	RCCGGY	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	3 cut(s)	73, 428, 501
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	123, 323
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	532
BseXI	GCAGC	2 cut(s)	381, 503
BseYI	CCCAGC	2 cut(s)	122, 397
BshFI	GGCC	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	281, 317
BsiWI	CGTACG	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	123, 323
BsnI	GGCC	1 cut(s)	190
Bsp143I	GATC	4 cut(s)	144, 402, 432, 461
BspACI	CCGC	3 cut(s)	378, 477, 494
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	248
BspLI	GGNNCC	2 cut(s)	71, 315
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	3 cut(s)	410, 440, 469
BsrFI	RCCGGY	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	3 cut(s)	73, 428, 501
BssMI	GATC	4 cut(s)	144, 402, 432, 461
BssT1I	CCWWGG	2 cut(s)	73, 428
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	1 cut(s)	153
BstAPI	GCANNNNNTGC	2 cut(s)	335, 386
BstDEI	CTNAG	1 cut(s)	235
BstEII	GGTNACC	1 cut(s)	496
BstF5I	GGATG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	2 cut(s)	329, 482
BstKTI	GATC	4 cut(s)	147, 405, 435, 464
BstMBI	GATC	4 cut(s)	144, 402, 432, 461
BstMWI	GCNNNNNNNGC	5 cut(s)	326, 335, 344, 386, 488
BstNI	CCWGG	1 cut(s)	502
BstPI	GGTNACC	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	500
BstSFI	CTRYAG	2 cut(s)	387, 483
BstV1I	GCAGC	2 cut(s)	381, 503
BstX2I	RGATCY	2 cut(s)	402, 461
BstYI	RGATCY	2 cut(s)	402, 461
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	369
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	124, 396
CaiI	CAGNNNCTG	1 cut(s)	386
CfoI	GCGC	2 cut(s)	329, 482
Cfr10I	RCCGGY	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	4 cut(s)	29, 268, 284, 309
CviAII	CATG	6 cut(s)	113, 142, 257, 352, 436, 452
CviJI	RGCY	7 cut(s)	72, 190, 218, 224, 234, 506, 523
CviKI_1	RGCY	7 cut(s)	72, 190, 218, 224, 234, 506, 523
CviQI	GTAC	4 cut(s)	29, 268, 284, 309
DdeI	CTNAG	1 cut(s)	235
DpnI	GATC	4 cut(s)	146, 404, 434, 463
DpnII	GATC	4 cut(s)	144, 402, 432, 461
Eco130I	CCWWGG	2 cut(s)	73, 428
Eco57I	CTGAAG	1 cut(s)	224
Eco91I	GGTNACC	1 cut(s)	496
EcoO65I	GGTNACC	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	500
EcoT14I	CCWWGG	2 cut(s)	73, 428
ErhI	CCWWGG	2 cut(s)	73, 428
FaeI	CATG	6 cut(s)	116, 145, 260, 355, 439, 455
FatI	CATG	6 cut(s)	112, 141, 256, 351, 435, 451
FauI	CCCGC	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	3 cut(s)	395, 478, 492
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	3 cut(s)	395, 478, 492
FspBI	CTAG	1 cut(s)	507
GlaI	GCGC	2 cut(s)	328, 481
GluI	GCNGC	3 cut(s)	395, 478, 492
GsaI	CCCAGC	2 cut(s)	126, 401
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	2 cut(s)	281, 317
HhaI	GCGC	2 cut(s)	329, 482
Hin1II	CATG	6 cut(s)	116, 145, 260, 355, 439, 455
Hin6I	GCGC	2 cut(s)	327, 480
HinP1I	GCGC	2 cut(s)	327, 480
HpaII	CCGG	2 cut(s)	281, 317
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	3 cut(s)	14, 85, 253
Hpy188I	TCNGA	2 cut(s)	149, 516
Hpy188III	TCNNGA	1 cut(s)	415
Hpy8I	GTNNAC	3 cut(s)	14, 85, 253
HpyAV	CCTTC	4 cut(s)	159, 271, 285, 412
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	104, 389
HpyF10VI	GCNNNNNNNGC	5 cut(s)	326, 335, 344, 386, 488
HpyF3I	CTNAG	1 cut(s)	235
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	6 cut(s)	116, 145, 260, 355, 439, 455
HspAI	GCGC	2 cut(s)	327, 480
Kzo9I	GATC	4 cut(s)	144, 402, 432, 461
LmnI	GCTCC	2 cut(s)	69, 221
Lsp1109I	GCAGC	2 cut(s)	381, 503
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	4 cut(s)	146, 404, 434, 463
MboI	GATC	4 cut(s)	144, 402, 432, 461
MflI	RGATCY	2 cut(s)	402, 461
MluCI	AATT	4 cut(s)	35, 56, 105, 194
MnlI	CCTC	4 cut(s)	56, 433, 510, 513
MseI	TTAA	2 cut(s)	138, 342
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	2 cut(s)	281, 317
MspR9I	CCNGG	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	5 cut(s)	326, 335, 344, 386, 488
NdeII	GATC	4 cut(s)	144, 402, 432, 461
NlaIII	CATG	6 cut(s)	116, 145, 260, 355, 439, 455
NlaIV	GGNNCC	2 cut(s)	71, 315
Pfl23II	CGTACG	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	396, 479, 493
Psp6I	CCWGG	1 cut(s)	500
PspEI	GGTNACC	1 cut(s)	496
PspFI	CCCAGC	2 cut(s)	122, 397
PspGI	CCWGG	1 cut(s)	500
PspLI	CGTACG	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	71, 315
PspPI	GGNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	402, 461
RsaI	GTAC	4 cut(s)	30, 269, 285, 310
RsaNI	GTAC	4 cut(s)	29, 268, 284, 309
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	138, 342
SatI	GCNGC	3 cut(s)	395, 478, 492
Sau3AI	GATC	4 cut(s)	144, 402, 432, 461
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	502
SetI	ASST	5 cut(s)	48, 84, 220, 226, 503
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	2 cut(s)	387, 483
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	4 cut(s)	35, 56, 105, 194
SsiI	CCGC	3 cut(s)	378, 477, 494
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	500
StyI	CCWWGG	2 cut(s)	73, 428
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	84
TasI	AATT	4 cut(s)	35, 56, 105, 194
TauI	GCSGC	1 cut(s)	480
Tru1I	TTAA	2 cut(s)	138, 342
Tru9I	TTAA	2 cut(s)	138, 342
TscAI	CASTG	2 cut(s)	124, 396
TseI	GCWGC	2 cut(s)	394, 491
TspDTI	ATGAA	1 cut(s)	358
TspGWI	ACGGA	2 cut(s)	296, 326
TspRI	CASTG	2 cut(s)	124, 396
XapI	RAATTY	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.