Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Reverse (-)

29828102 .. 29831792

Gene Structure 3691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1214000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCAGAGGTTCCTTTCTCTGAAACTAGCCTCCTCAAACCTCCCCAGAAACCTCCCAACCTCCGTCACATCCACCGCCACCACCTCCCCAATCTTCCACTCCCAATGTCACAAAACGTTTTCTCTCGCCAAACCGCCCATAACCCAGAACCTAAACCACTTCTTCAGCTCCTTTCCTGCACTCCCGCTTCGCCACCACCCTCATCCATGGCGGTCGCAGCACACTCTCGCGCAAAAAATTCTTGGGTTTGTCTCCAACCCATCACTCAGAAACCAATCCTTTCTGGGTTTCTCGAATACCCTTCTGAGAGCTTCAAGCAAAAGCCTTTCGGACTGCAGAGTCGGATTCCTCAGAGCCCAACTTCCCAAACGGAGCTTTAAGTTCAACCAGATCACTTCTCATCGGAGTCCATGGAGGTCGTGGTTCGGGAGGTTATCGAATAATGAAGTGGTTTTGGGATTGATTCTAGCAAATGTTGCTGTTTTTCTTTTATGGAGGATTGCAGATCGTAGCTTCATGATGAATAATTTTACCATTTCATTACACAATTTTGCAAGTGGACGGCTGCACACGTTGATAACTTCTGCATTCAGTCATATTGATGCTGGGCATATCTTTTCTAACATGATCGGACTATATTTTTTTGGGATGAATATTGGAAGAGTTTTTGGGCCTGAGTTTTTGCTGAAGTTGTATCTAGCCGGGGCAGTTGGTGGCTCAGTCTTTTTCTTGGTCCACAAAGCCTTCCTGGCCTCATCATCGCAGGGCCGAAAGCCTTGGAACACGGAGGCGGCAAAGATACCAGGACTGGGGGCAAGCGGAGCTGTTAATGCTATCATGTTGCTCGATATATTTCTCTTCCCAAAAGCAACACTCTACTTAGAATTCATCATACCAGTTCCTGCCATCCTGCTGGGTATCTTTCTAATTGGGAAAGACGTCTTGAGGATAATAGAGGGAGACAGACATATCTCAGGAGCTGCACACTTGGGGGGTGCTGCGGTTGCAGCCATAGCGTGGGCACGGCTTCGGAAGGGGCGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

349

Amino Acids

38.52

Weight (kDa)

11.52

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	187 - 340	2.1e-23	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AatII	GACGTC	1 cut(s)	942
AccB7I	CCANNNNNTGG	1 cut(s)	1017
AccII	CGCG	1 cut(s)	230
AciI	CCGC	7 cut(s)	75, 134, 185, 211, 791, 819, 1001
AclI	AACGTT	1 cut(s)	116
AcsI	RAATTY	2 cut(s)	237, 884
AcuI	CTGAAG	2 cut(s)	148, 707
AcyI	GRCGYC	1 cut(s)	939
AfiI	CCNNNNNNNGG	2 cut(s)	809, 1017
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	2 cut(s)	315, 385
AjnI	CCWGG	2 cut(s)	747, 802
AluBI	AGCT	6 cut(s)	168, 311, 375, 513, 824, 980
AluI	AGCT	6 cut(s)	168, 311, 375, 513, 824, 980
Alw26I	GTCTC	2 cut(s)	256, 954
AlwNI	CAGNNNCTG	2 cut(s)	902, 980
AoxI	GGCC	3 cut(s)	671, 750, 766
ApeKI	GCWGC	5 cut(s)	217, 565, 980, 998, 1007
ApoI	RAATTY	2 cut(s)	237, 884
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	3 cut(s)	671, 733, 766
AsuC2I	CCSGG	1 cut(s)	703
AvaII	GGWCC	1 cut(s)	733
BaeGI	GKGCMC	1 cut(s)	1024
BanII	GRGCYC	1 cut(s)	358
BbvI	GCAGC	5 cut(s)	229, 552, 967, 985, 1019
BccI	CCATC	2 cut(s)	268, 914
BceAI	ACGGC	2 cut(s)	578, 1040
BciT130I	CCWGG	2 cut(s)	749, 804
BcnI	CCSGG	1 cut(s)	703
BcoDI	GTCTC	2 cut(s)	256, 954
BfaI	CTAG	3 cut(s)	26, 467, 698
BfmI	CTRYAG	1 cut(s)	334
BglI	GCCNNNNNGGC	1 cut(s)	749
BisI	GCNGC	6 cut(s)	218, 566, 792, 981, 999, 1008
BlsI	GCNGC	6 cut(s)	219, 567, 793, 982, 1000, 1009
Bme1390I	CCNGG	3 cut(s)	703, 749, 804
Bme18I	GGWCC	1 cut(s)	733
BmgT120I	GGNCC	3 cut(s)	671, 733, 766
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	3 cut(s)	703, 749, 804
BmrI	ACTGGG	1 cut(s)	818
BmsI	GCATC	1 cut(s)	592
BmuI	ACTGGG	1 cut(s)	818
BpuEI	CTTGAG	1 cut(s)	964
BpuMI	CCSGG	1 cut(s)	703
BsaHI	GRCGYC	1 cut(s)	939
BsaJI	CCNNGG	4 cut(s)	206, 410, 702, 776
Bsc4I	CCNNNNNNNGG	2 cut(s)	809, 1017
Bse1I	ACTGG	2 cut(s)	813, 896
BseBI	CCWGG	2 cut(s)	749, 804
BseDI	CCNNGG	4 cut(s)	206, 410, 702, 776
BseGI	GGATG	4 cut(s)	68, 202, 654, 906
BseLI	CCNNNNNNNGG	2 cut(s)	809, 1017
BseMII	CTCAG	6 cut(s)	280, 296, 364, 666, 732, 987
BseNI	ACTGG	2 cut(s)	813, 896
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	1024
BseXI	GCAGC	5 cut(s)	229, 552, 967, 985, 1019
BseYI	CCCAGC	2 cut(s)	605, 913
BsgI	GTGCAG	3 cut(s)	162, 551, 966
Bsh1236I	CGCG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	3 cut(s)	673, 752, 768
BsiEI	CGRYCG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	702
BslI	CCNNNNNNNGG	2 cut(s)	809, 1017
BsmAI	GTCTC	2 cut(s)	256, 954
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	3 cut(s)	673, 752, 768
Bsp1286I	GDGCHC	2 cut(s)	358, 1024
Bsp143I	GATC	3 cut(s)	390, 505, 627
Bsp19I	CCATGG	2 cut(s)	206, 410
BspACI	CCGC	7 cut(s)	75, 134, 185, 211, 791, 819, 1001
BspANI	GGCC	3 cut(s)	673, 752, 768
BspCNI	CTCAG	6 cut(s)	279, 297, 363, 667, 731, 986
BspFNI	CGCG	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	11
BspMAI	CTGCAG	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	813, 896
BssECI	CCNNGG	4 cut(s)	206, 410, 702, 776
BssMI	GATC	3 cut(s)	390, 505, 627
BssNI	GRCGYC	1 cut(s)	939
BssT1I	CCWWGG	3 cut(s)	206, 410, 776
Bst2UI	CCWGG	2 cut(s)	749, 804
Bst6I	CTCTTC	2 cut(s)	655, 863
BstACI	GRCGYC	1 cut(s)	939
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	817
BstDEI	CTNAG	7 cut(s)	266, 305, 350, 675, 718, 880, 973
BstDSI	CCRYGG	2 cut(s)	206, 410
BstF5I	GGATG	4 cut(s)	68, 202, 654, 906
BstFNI	CGCG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	3 cut(s)	393, 508, 630
BstMAI	GTCTC	2 cut(s)	256, 954
BstMBI	GATC	3 cut(s)	390, 505, 627
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	8 cut(s)	217, 476, 749, 821, 830, 1004, 1007, 1013
BstNI	CCWGG	2 cut(s)	749, 804
BstSCI	CCNGG	3 cut(s)	701, 747, 802
BstSFI	CTRYAG	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	1024
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	5 cut(s)	229, 552, 967, 985, 1019
BstXI	CCANNNNNNTGG	1 cut(s)	913
BsuRI	GGCC	3 cut(s)	673, 752, 768
BtgI	CCRYGG	2 cut(s)	206, 410
BtgZI	GCGATG	1 cut(s)	744
BtsCI	GGATG	4 cut(s)	68, 202, 654, 906
Cac8I	GCNNGC	1 cut(s)	817
CaiI	CAGNNNCTG	2 cut(s)	902, 980
CciI	TCATGA	1 cut(s)	516
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	3 cut(s)	671, 733, 766
CviAII	CATG	5 cut(s)	207, 411, 517, 625, 838
DdeI	CTNAG	7 cut(s)	266, 305, 350, 675, 718, 880, 973
DpnI	GATC	3 cut(s)	392, 507, 629
DpnII	GATC	3 cut(s)	390, 505, 627
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
Eam1104I	CTCTTC	2 cut(s)	655, 863
EarI	CTCTTC	2 cut(s)	655, 863
Eco130I	CCWWGG	3 cut(s)	206, 410, 776
Eco24I	GRGCYC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	733
Eco57I	CTGAAG	2 cut(s)	148, 707
EcoRI	GAATTC	1 cut(s)	884
EcoRII	CCWGG	2 cut(s)	747, 802
EcoT14I	CCWWGG	3 cut(s)	206, 410, 776
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	3 cut(s)	206, 410, 776
FaeI	CATG	5 cut(s)	210, 414, 520, 628, 841
FatI	CATG	5 cut(s)	206, 410, 516, 624, 837
FauI	CCCGC	1 cut(s)	192
Fnu4HI	GCNGC	6 cut(s)	218, 566, 792, 981, 999, 1008
FokI	GGATG	4 cut(s)	55, 189, 661, 893
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	6 cut(s)	218, 566, 792, 981, 999, 1008
FspBI	CTAG	3 cut(s)	26, 467, 698
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	6 cut(s)	218, 566, 792, 981, 999, 1008
GsaI	CCCAGC	2 cut(s)	609, 917
HaeIII	GGCC	3 cut(s)	673, 752, 768
HapII	CCGG	1 cut(s)	702
HhaI	GCGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	939
Hin1II	CATG	5 cut(s)	210, 414, 520, 628, 841
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	4 cut(s)	339, 345, 406, 463
HpaII	CCGG	1 cut(s)	702
Hpy166II	GTNNAC	2 cut(s)	560, 736
Hpy188III	TCNNGA	5 cut(s)	292, 427, 517, 943, 975
Hpy8I	GTNNAC	2 cut(s)	560, 736
HpyAV	CCTTC	3 cut(s)	311, 754, 1027
HpyCH4IV	ACGT	3 cut(s)	116, 572, 939
HpyCH4V	TGCA	9 cut(s)	4, 179, 336, 503, 554, 568, 587, 983, 1007
HpyF10VI	GCNNNNNNNGC	8 cut(s)	217, 476, 749, 821, 830, 1004, 1007, 1013
HpyF3I	CTNAG	7 cut(s)	266, 305, 350, 675, 718, 880, 973
HpySE526I	ACGT	3 cut(s)	116, 572, 939
Hsp92I	GRCGYC	1 cut(s)	939
Hsp92II	CATG	5 cut(s)	210, 414, 520, 628, 841
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	3 cut(s)	390, 505, 627
LmnI	GCTCC	4 cut(s)	173, 372, 821, 977
Lsp1109I	GCAGC	5 cut(s)	229, 552, 967, 985, 1019
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	3 cut(s)	26, 467, 698
MaeII	ACGT	3 cut(s)	116, 572, 939
MaeIII	GTNAC	2 cut(s)	64, 107
MalI	GATC	3 cut(s)	392, 507, 629
MboI	GATC	3 cut(s)	390, 505, 627
MboII	GAAGA	4 cut(s)	85, 154, 672, 850
MhlI	GDGCHC	2 cut(s)	358, 1024
MluCI	AATT	5 cut(s)	237, 526, 547, 884, 927
MlyI	GAGTC	2 cut(s)	348, 415
MmeI	TCCRAC	2 cut(s)	279, 322
MseI	TTAA	2 cut(s)	378, 828
MslI	CAYNNNNRTG	1 cut(s)	600
MspI	CCGG	1 cut(s)	702
MspR9I	CCNGG	3 cut(s)	703, 749, 804
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	2 cut(s)	749, 804
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	8 cut(s)	217, 476, 749, 821, 830, 1004, 1007, 1013
NciI	CCSGG	1 cut(s)	703
NcoI	CCATGG	2 cut(s)	206, 410
NdeII	GATC	3 cut(s)	390, 505, 627
NlaIII	CATG	5 cut(s)	210, 414, 520, 628, 841
NlaIV	GGNNCC	1 cut(s)	11
NmuCI	GTSAC	2 cut(s)	64, 107
PagI	TCATGA	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	1036
PctI	GAATGC	1 cut(s)	587
PfeI	GAWTC	2 cut(s)	345, 463
PflMI	CCANNNNNTGG	1 cut(s)	1017
PkrI	GCNGC	6 cut(s)	219, 567, 793, 982, 1000, 1009
PleI	GAGTC	2 cut(s)	347, 414
PpsI	GAGTC	2 cut(s)	347, 414
Psp1406I	AACGTT	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	747, 802
PspFI	CCCAGC	2 cut(s)	605, 913
PspGI	CCWGG	2 cut(s)	747, 802
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	3 cut(s)	671, 733, 766
PstI	CTGCAG	1 cut(s)	338
PstNI	CAGNNNCTG	2 cut(s)	902, 980
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	2 cut(s)	378, 828
SatI	GCNGC	6 cut(s)	218, 566, 792, 981, 999, 1008
Sau3AI	GATC	3 cut(s)	390, 505, 627
Sau96I	GGNCC	3 cut(s)	671, 733, 766
SchI	GAGTC	2 cut(s)	348, 415
ScrFI	CCNGG	3 cut(s)	703, 749, 804
SduI	GDGCHC	2 cut(s)	358, 1024
SfaNI	GCATC	1 cut(s)	592
SfcI	CTRYAG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	733
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	943
SmoI	CTYRAG	1 cut(s)	943
Sse9I	AATT	5 cut(s)	237, 526, 547, 884, 927
SsiI	CCGC	7 cut(s)	75, 134, 185, 211, 791, 819, 1001
SspI	AATATT	1 cut(s)	655
SspMI	CTAG	3 cut(s)	26, 467, 698
StyD4I	CCNGG	3 cut(s)	701, 747, 802
StyI	CCWWGG	3 cut(s)	206, 410, 776
TaiI	ACGT	3 cut(s)	119, 575, 942
TaqI	TCGA	3 cut(s)	293, 437, 846
TasI	AATT	5 cut(s)	237, 526, 547, 884, 927
TauI	GCSGC	1 cut(s)	794
TfiI	GAWTC	2 cut(s)	345, 463
Tru1I	TTAA	2 cut(s)	378, 828
Tru9I	TTAA	2 cut(s)	378, 828
TseFI	GTSAC	2 cut(s)	64, 107
TseI	GCWGC	5 cut(s)	217, 565, 980, 998, 1007
Tsp45I	GTSAC	2 cut(s)	64, 107
TspDTI	ATGAA	6 cut(s)	459, 505, 528, 536, 665, 877
TspGWI	ACGGA	3 cut(s)	52, 385, 800
Van91I	CCANNNNNTGG	1 cut(s)	1017
VpaK11BI	GGWCC	1 cut(s)	733
XapI	RAATTY	2 cut(s)	237, 884
XcmI	CCANNNNNNNNNTGG	1 cut(s)	417
XspI	CTAG	3 cut(s)	26, 467, 698
ZraI	GACGTC	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.