Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Reverse (-)

19569735 .. 19573148

Gene Structure 3414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g17740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCAGAGGCTCCTTTCTCTGAAACTAGCCTCCTCAAACCTCCCCAGAAACCTCCCAACCTCCGCCACATCCACCGCCACCACCTCCCCAATCTTCCACTCCCAATGTCACAAAACGTTTTCTCTCGCCAAACCGCCCATAACCCAGAACCAAAACCACTTCTTCAGCTCCTTTCCTGCACTCCCGCTTCGCCACCACCCTCATCCATGGCGGTCGCAGCACACTCTCGCGCAAAAAATTCATGGGTTTCTCTCCAACTCATCAGTCAGAAAGCAATCCTTTCTGGGTTTCTCGAATACCCTTCTGAGAGCTTCAAGCAAGAGCCTTTCGGACTGCAGAGTCGGATTCCTCAGAGCCCAATTTCCCAAACGGAGCTTTAAGTTCAACCAGAATTTCACTTCTCATCGGAGTCCATGGAGGTCGTGGTTCGGGAGGTTATCGAATAATGAAGTGGTTTTGGGATTGATTGTAGCTAATGTTGCTGTTTTTCTTTTATGGAGGATTGCAGATCGTAGCTTCATGATGAATAATTTTACCATTTCATTACACAATTTTGCAAGTGGACGGCTGCACACGTTGATAACTTCTGCATTCAGTCATATTGATGCTGGGCATATCTTTTCTAACATGATCGGACTATATTTTTTTGGGATGAATATTGGAAGAGTTTTTGGGCCTGAGTTTTTGCTGAAGTTGTATCTAGCCGGGGCAGTTGGTGGCTCAGTCTTTTTCTTGGTCCACAAAGCCTTCCTGGCCGCGTCATCGCAGGGCCGAAAGCCATGGAACACGGAGGCGGCAAAGATACCAGGACTGGGGGCAAGCGGAGCTGTTAATGCTATCATGTTGCTCGATATATTCCTCTTCCCAAAAGCAACCCTCTACTTAGAATTCATCATACCAGTTCCTGCCATCCTGCTGGGTATCTTTCTAATTGGGAACGACGTCTTGAGGATAATAGAGGGAGACAGACATATCTCAGGAGCTGCACACTTGGGGGGTGCTGCGGTTGCAGCCATAGCGTGGGCACGGCTTCGGAAGGGGCGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

350

Amino Acids

38.64

Weight (kDa)

11.52

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	188 - 341	1.3e-23	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AatII	GACGTC	1 cut(s)	945
AccB7I	CCANNNNNTGG	1 cut(s)	1020
AccII	CGCG	2 cut(s)	230, 758
AciI	CCGC	9 cut(s)	63, 75, 134, 185, 211, 756, 794, 822, 1004
AclI	AACGTT	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	753
AcsI	RAATTY	3 cut(s)	237, 391, 887
AcuI	CTGAAG	2 cut(s)	148, 710
AcyI	GRCGYC	1 cut(s)	942
AfiI	CCNNNNNNNGG	2 cut(s)	812, 1020
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	2 cut(s)	315, 385
AjnI	CCWGG	2 cut(s)	750, 805
AluBI	AGCT	7 cut(s)	168, 311, 375, 473, 516, 827, 983
AluI	AGCT	7 cut(s)	168, 311, 375, 473, 516, 827, 983
Alw26I	GTCTC	1 cut(s)	957
AlwNI	CAGNNNCTG	2 cut(s)	905, 983
AoxI	GGCC	3 cut(s)	674, 753, 769
ApeKI	GCWGC	5 cut(s)	217, 568, 983, 1001, 1010
ApoI	RAATTY	3 cut(s)	237, 391, 887
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	3 cut(s)	674, 736, 769
AsuC2I	CCSGG	1 cut(s)	706
AvaII	GGWCC	1 cut(s)	736
BaeGI	GKGCMC	1 cut(s)	1027
BanII	GRGCYC	1 cut(s)	358
BbvI	GCAGC	5 cut(s)	229, 555, 970, 988, 1022
BccI	CCATC	1 cut(s)	917
BceAI	ACGGC	2 cut(s)	581, 1043
BciT130I	CCWGG	2 cut(s)	752, 807
BcnI	CCSGG	1 cut(s)	706
BcoDI	GTCTC	1 cut(s)	957
BfaI	CTAG	2 cut(s)	26, 701
BfmI	CTRYAG	1 cut(s)	334
BglI	GCCNNNNNGGC	1 cut(s)	752
BisI	GCNGC	7 cut(s)	218, 569, 756, 795, 984, 1002, 1011
BlsI	GCNGC	7 cut(s)	219, 570, 757, 796, 985, 1003, 1012
Bme1390I	CCNGG	3 cut(s)	706, 752, 807
Bme18I	GGWCC	1 cut(s)	736
BmgT120I	GGNCC	3 cut(s)	674, 736, 769
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	3 cut(s)	706, 752, 807
BmrI	ACTGGG	1 cut(s)	821
BmsI	GCATC	1 cut(s)	595
BmuI	ACTGGG	1 cut(s)	821
BpuEI	CTTGAG	1 cut(s)	967
BpuMI	CCSGG	1 cut(s)	706
BsaHI	GRCGYC	1 cut(s)	942
BsaJI	CCNNGG	4 cut(s)	206, 413, 705, 779
Bsc4I	CCNNNNNNNGG	2 cut(s)	812, 1020
Bse1I	ACTGG	2 cut(s)	816, 899
BseBI	CCWGG	2 cut(s)	752, 807
BseDI	CCNNGG	4 cut(s)	206, 413, 705, 779
BseGI	GGATG	4 cut(s)	68, 202, 657, 909
BseLI	CCNNNNNNNGG	2 cut(s)	812, 1020
BseMII	CTCAG	5 cut(s)	296, 364, 669, 735, 990
BseNI	ACTGG	2 cut(s)	816, 899
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	1027
BseXI	GCAGC	5 cut(s)	229, 555, 970, 988, 1022
BseYI	CCCAGC	2 cut(s)	608, 916
BsgI	GTGCAG	3 cut(s)	162, 554, 969
Bsh1236I	CGCG	2 cut(s)	230, 758
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	3 cut(s)	676, 755, 771
BsiEI	CGRYCG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	705
BslI	CCNNNNNNNGG	2 cut(s)	812, 1020
BsmAI	GTCTC	1 cut(s)	957
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	3 cut(s)	676, 755, 771
Bsp1286I	GDGCHC	2 cut(s)	358, 1027
Bsp143I	GATC	2 cut(s)	508, 630
Bsp19I	CCATGG	3 cut(s)	206, 413, 779
BspACI	CCGC	9 cut(s)	63, 75, 134, 185, 211, 756, 794, 822, 1004
BspANI	GGCC	3 cut(s)	676, 755, 771
BspCNI	CTCAG	5 cut(s)	297, 363, 670, 734, 989
BspFNI	CGCG	2 cut(s)	230, 758
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	1 cut(s)	11
BspMAI	CTGCAG	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	816, 899
BssECI	CCNNGG	4 cut(s)	206, 413, 705, 779
BssMI	GATC	2 cut(s)	508, 630
BssNI	GRCGYC	1 cut(s)	942
BssT1I	CCWWGG	3 cut(s)	206, 413, 779
Bst2UI	CCWGG	2 cut(s)	752, 807
Bst6I	CTCTTC	2 cut(s)	658, 866
BstACI	GRCGYC	1 cut(s)	942
BstC8I	GCNNGC	1 cut(s)	820
BstDEI	CTNAG	6 cut(s)	305, 350, 678, 721, 883, 976
BstDSI	CCRYGG	3 cut(s)	206, 413, 779
BstF5I	GGATG	4 cut(s)	68, 202, 657, 909
BstFNI	CGCG	2 cut(s)	230, 758
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	2 cut(s)	511, 633
BstMAI	GTCTC	1 cut(s)	957
BstMBI	GATC	2 cut(s)	508, 630
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	8 cut(s)	217, 479, 752, 824, 833, 1007, 1010, 1016
BstNI	CCWGG	2 cut(s)	752, 807
BstSCI	CCNGG	3 cut(s)	704, 750, 805
BstSFI	CTRYAG	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	1027
BstUI	CGCG	2 cut(s)	230, 758
BstV1I	GCAGC	5 cut(s)	229, 555, 970, 988, 1022
BstXI	CCANNNNNNTGG	1 cut(s)	916
BsuRI	GGCC	3 cut(s)	676, 755, 771
BtgI	CCRYGG	3 cut(s)	206, 413, 779
BtgZI	GCGATG	1 cut(s)	747
BtsCI	GGATG	4 cut(s)	68, 202, 657, 909
Cac8I	GCNNGC	1 cut(s)	820
CaiI	CAGNNNCTG	2 cut(s)	905, 983
CciI	TCATGA	1 cut(s)	519
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	3 cut(s)	674, 736, 769
CseI	GACGC	1 cut(s)	747
CviAII	CATG	7 cut(s)	207, 242, 414, 520, 628, 780, 841
DdeI	CTNAG	6 cut(s)	305, 350, 678, 721, 883, 976
DpnI	GATC	2 cut(s)	510, 632
DpnII	GATC	2 cut(s)	508, 630
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	753
Eam1104I	CTCTTC	2 cut(s)	658, 866
EarI	CTCTTC	2 cut(s)	658, 866
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	3 cut(s)	206, 413, 779
Eco24I	GRGCYC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	736
Eco57I	CTGAAG	2 cut(s)	148, 710
EcoRI	GAATTC	1 cut(s)	887
EcoRII	CCWGG	2 cut(s)	750, 805
EcoT14I	CCWWGG	3 cut(s)	206, 413, 779
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	3 cut(s)	206, 413, 779
FaeI	CATG	7 cut(s)	210, 245, 417, 523, 631, 783, 844
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	7 cut(s)	206, 241, 413, 519, 627, 779, 840
FauI	CCCGC	1 cut(s)	192
Fnu4HI	GCNGC	7 cut(s)	218, 569, 756, 795, 984, 1002, 1011
FokI	GGATG	4 cut(s)	55, 189, 664, 896
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	7 cut(s)	218, 569, 756, 795, 984, 1002, 1011
FspBI	CTAG	2 cut(s)	26, 701
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	7 cut(s)	218, 569, 756, 795, 984, 1002, 1011
GsaI	CCCAGC	2 cut(s)	612, 920
HaeIII	GGCC	3 cut(s)	676, 755, 771
HapII	CCGG	1 cut(s)	705
HgaI	GACGC	1 cut(s)	747
HhaI	GCGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	942
Hin1II	CATG	7 cut(s)	210, 245, 417, 523, 631, 783, 844
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	3 cut(s)	339, 345, 409
HpaII	CCGG	1 cut(s)	705
Hpy166II	GTNNAC	2 cut(s)	563, 739
Hpy188III	TCNNGA	5 cut(s)	292, 430, 520, 946, 978
Hpy8I	GTNNAC	2 cut(s)	563, 739
Hpy99I	CGWCG	1 cut(s)	944
HpyAV	CCTTC	3 cut(s)	311, 757, 1030
HpyCH4IV	ACGT	3 cut(s)	116, 575, 942
HpyCH4V	TGCA	9 cut(s)	4, 179, 336, 506, 557, 571, 590, 986, 1010
HpyF10VI	GCNNNNNNNGC	8 cut(s)	217, 479, 752, 824, 833, 1007, 1010, 1016
HpyF3I	CTNAG	6 cut(s)	305, 350, 678, 721, 883, 976
HpySE526I	ACGT	3 cut(s)	116, 575, 942
Hsp92I	GRCGYC	1 cut(s)	942
Hsp92II	CATG	7 cut(s)	210, 245, 417, 523, 631, 783, 844
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	508, 630
LmnI	GCTCC	5 cut(s)	15, 173, 372, 824, 980
Lsp1109I	GCAGC	5 cut(s)	229, 555, 970, 988, 1022
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	2 cut(s)	26, 701
MaeII	ACGT	3 cut(s)	116, 575, 942
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	2 cut(s)	510, 632
MboI	GATC	2 cut(s)	508, 630
MboII	GAAGA	4 cut(s)	85, 154, 675, 853
MhlI	GDGCHC	2 cut(s)	358, 1027
MluCI	AATT	7 cut(s)	237, 359, 391, 529, 550, 887, 930
MlyI	GAGTC	2 cut(s)	348, 418
MmeI	TCCRAC	2 cut(s)	279, 322
MseI	TTAA	2 cut(s)	378, 831
MslI	CAYNNNNRTG	1 cut(s)	603
MspI	CCGG	1 cut(s)	705
MspR9I	CCNGG	3 cut(s)	706, 752, 807
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	2 cut(s)	752, 807
MvnI	CGCG	2 cut(s)	230, 758
MwoI	GCNNNNNNNGC	8 cut(s)	217, 479, 752, 824, 833, 1007, 1010, 1016
NciI	CCSGG	1 cut(s)	706
NcoI	CCATGG	3 cut(s)	206, 413, 779
NdeII	GATC	2 cut(s)	508, 630
NlaIII	CATG	7 cut(s)	210, 245, 417, 523, 631, 783, 844
NlaIV	GGNNCC	1 cut(s)	11
NmuCI	GTSAC	1 cut(s)	107
PagI	TCATGA	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	1 cut(s)	1039
PctI	GAATGC	1 cut(s)	590
PfeI	GAWTC	1 cut(s)	345
PflMI	CCANNNNNTGG	1 cut(s)	1020
PkrI	GCNGC	7 cut(s)	219, 570, 757, 796, 985, 1003, 1012
PleI	GAGTC	2 cut(s)	347, 417
PpsI	GAGTC	2 cut(s)	347, 417
Psp1406I	AACGTT	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	750, 805
PspFI	CCCAGC	2 cut(s)	608, 916
PspGI	CCWGG	2 cut(s)	750, 805
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	3 cut(s)	674, 736, 769
PstI	CTGCAG	1 cut(s)	338
PstNI	CAGNNNCTG	2 cut(s)	905, 983
RseI	CAYNNNNRTG	1 cut(s)	603
SaqAI	TTAA	2 cut(s)	378, 831
SatI	GCNGC	7 cut(s)	218, 569, 756, 795, 984, 1002, 1011
Sau3AI	GATC	2 cut(s)	508, 630
Sau96I	GGNCC	3 cut(s)	674, 736, 769
SchI	GAGTC	2 cut(s)	348, 418
ScrFI	CCNGG	3 cut(s)	706, 752, 807
SduI	GDGCHC	2 cut(s)	358, 1027
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	736
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	946
SmoI	CTYRAG	1 cut(s)	946
Sse9I	AATT	7 cut(s)	237, 359, 391, 529, 550, 887, 930
SsiI	CCGC	9 cut(s)	63, 75, 134, 185, 211, 756, 794, 822, 1004
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	2 cut(s)	26, 701
StyD4I	CCNGG	3 cut(s)	704, 750, 805
StyI	CCWWGG	3 cut(s)	206, 413, 779
TaiI	ACGT	3 cut(s)	119, 578, 945
TaqI	TCGA	3 cut(s)	293, 440, 849
TasI	AATT	7 cut(s)	237, 359, 391, 529, 550, 887, 930
TauI	GCSGC	2 cut(s)	758, 797
TfiI	GAWTC	1 cut(s)	345
Tru1I	TTAA	2 cut(s)	378, 831
Tru9I	TTAA	2 cut(s)	378, 831
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	5 cut(s)	217, 568, 983, 1001, 1010
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	7 cut(s)	230, 462, 508, 531, 539, 668, 880
TspGWI	ACGGA	2 cut(s)	385, 803
Van91I	CCANNNNNTGG	1 cut(s)	1020
VpaK11BI	GGWCC	1 cut(s)	736
XapI	RAATTY	3 cut(s)	237, 391, 887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	420
XspI	CTAG	2 cut(s)	26, 701
ZraI	GACGTC	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.