Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Forward (+)

7706033 .. 7708748

Gene Structure 2716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13610.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTCCTTGTTGCCAGAGAACATGCCAATATCGAAGCTGCGCAAATCTTTTGTTTTCCCAGCATCGGGTGCAAGCGGTGCTGTTACTGCTACCATTTTGCTTGATATATTCCTCCACCCCACTGCTAGACTCTACTTTATCATCCCCGTTCCTGCCATGCTGCTGGGGATGTTTTTACTTGGGCAGGATTTCTTAAGGGTGAATTCGGGATACATGTTTATCTCAGGATCCACACACTTGGGTGGTGCCACAGTTGCAGCCATAGTCTGGGTCTGGGCAACGACTTCGGAAGAGGCGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

101

Amino Acids

10.8

Weight (kDa)

8.23

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	13 - 82	6.5e-06	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	267
AccII	CGCG	1 cut(s)	298
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	222, 235
AcsI	RAATTY	1 cut(s)	202
AfiI	CCNNNNNNNGG	3 cut(s)	64, 65, 267
AflII	CTTAAG	1 cut(s)	193
AflIII	ACRYGT	1 cut(s)	213
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
AlwI	GGATC	2 cut(s)	222, 235
ApeKI	GCWGC	3 cut(s)	37, 160, 257
ApoI	RAATTY	1 cut(s)	202
AspLEI	GCGC	2 cut(s)	42, 298
AsuHPI	GGTGA	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	245
BbvI	GCAGC	3 cut(s)	24, 147, 269
BcgI	CGANNNNNNTGC	2 cut(s)	267, 301
BciVI	GTATCC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	3 cut(s)	38, 161, 258
BlsI	GCNGC	3 cut(s)	39, 162, 259
BmiI	GGNNCC	2 cut(s)	229, 247
BmsI	GCATC	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 65, 267
BseGI	GGATG	2 cut(s)	141, 174
BseLI	CCNNNNNNNGG	3 cut(s)	64, 65, 267
BseMII	CTCAG	1 cut(s)	237
BseXI	GCAGC	3 cut(s)	24, 147, 269
BseYI	CCCAGC	2 cut(s)	58, 163
Bsh1236I	CGCG	1 cut(s)	298
BshNI	GGYRCC	1 cut(s)	245
BslI	CCNNNNNNNGG	3 cut(s)	64, 65, 267
Bsp143I	GATC	1 cut(s)	227
BspACI	CCGC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	236
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	229, 247
BspPI	GGATC	2 cut(s)	222, 235
BspT107I	GGYRCC	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	193
BssMI	GATC	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	285
BstAFI	CTTAAG	1 cut(s)	193
BstAPI	GCANNNNNTGC	2 cut(s)	68, 77
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	141, 174
BstFNI	CGCG	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	42, 298
BstKTI	GATC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 77, 86, 254
BstNSI	RCATGY	2 cut(s)	25, 217
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	3 cut(s)	24, 147, 269
BstX2I	RGATCY	1 cut(s)	227
BstXI	CCANNNNNNTGG	2 cut(s)	163, 238
BstYI	RGATCY	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	141, 174
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	2 cut(s)	42, 298
CviAII	CATG	3 cut(s)	22, 157, 214
CviJI	RGCY	2 cut(s)	37, 260
CviKI_1	RGCY	2 cut(s)	37, 260
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	202
FaeI	CATG	3 cut(s)	25, 160, 217
FaiI	YATR	5 cut(s)	23, 107, 158, 215, 263
FatI	CATG	3 cut(s)	21, 156, 213
Fnu4HI	GCNGC	3 cut(s)	38, 161, 258
FokI	GGATG	2 cut(s)	128, 181
Fsp4HI	GCNGC	3 cut(s)	38, 161, 258
FspBI	CTAG	1 cut(s)	126
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	2 cut(s)	41, 297
GluI	GCNGC	3 cut(s)	38, 161, 258
GsaI	CCCAGC	2 cut(s)	62, 167
HhaI	GCGC	2 cut(s)	42, 298
Hin1II	CATG	3 cut(s)	25, 160, 217
Hin6I	GCGC	2 cut(s)	40, 296
HinP1I	GCGC	2 cut(s)	40, 296
HinfI	GANTC	1 cut(s)	129
HphI	GGTGA	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	2 cut(s)	207, 225
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4V	TGCA	2 cut(s)	71, 257
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 77, 86, 254
HpyF3I	CTNAG	1 cut(s)	223
Hsp92II	CATG	3 cut(s)	25, 160, 217
HspAI	GCGC	2 cut(s)	40, 296
Kzo9I	GATC	1 cut(s)	227
LpnPI	CCDG	8 cut(s)	27, 72, 149, 165, 170, 210, 253, 259
Lsp1109I	GCAGC	3 cut(s)	24, 147, 269
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	1 cut(s)	302
MflI	RGATCY	1 cut(s)	227
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	123
MnlI	CCTC	2 cut(s)	122, 286
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	240
MspCI	CTTAAG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	4 cut(s)	68, 77, 86, 254
NdeII	GATC	1 cut(s)	227
NlaIII	CATG	3 cut(s)	25, 160, 217
NlaIV	GGNNCC	2 cut(s)	229, 247
NsbI	TGCGCA	1 cut(s)	41
NspI	RCATGY	2 cut(s)	25, 217
OliI	CACNNNNGTG	1 cut(s)	240
PciI	ACATGT	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	267
PkrI	GCNGC	3 cut(s)	39, 162, 259
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PscI	ACATGT	1 cut(s)	213
PspFI	CCCAGC	2 cut(s)	58, 163
PspN4I	GGNNCC	2 cut(s)	229, 247
PsuI	RGATCY	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	3 cut(s)	38, 161, 258
Sau3AI	GATC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	123
SetI	ASST	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	253
TaqI	TCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	3 cut(s)	37, 160, 257
TspRI	CASTG	1 cut(s)	127
Van91I	CCANNNNNTGG	1 cut(s)	267
Vha464I	CTTAAG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	2 cut(s)	25, 217
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.