Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Reverse (-)

39558763 .. 39561299

Gene Structure 2537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57311

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAATGGCGAGTTCAATCAGTTTCAATCTTGCTTACTGGCTTTGGTATATTGACCAGATTGGATTTCACTTTTGGGCCTGAGTTTTTGCTGAAGTTGTATCTAGCTGGAGCTATTGGTGGCTCAATCTTTTACTTGGTGCACCATGCCTTCCTTGCTGCATCATTGAAGAATCAACCATTTGGGATTATGGACGCTTCTAAGGCCCCAGGATTGGGGGCAAGCGGTGCTGTTAATGCCATCATGTTGCTTGATATATTCCTTCACTCCACAGCTACCCTCTACTTTGATTTTATCATACCAGTTCCTGCCATGCTGCTGGGAATCTTTCTAATTGGAAAGGATATCTTAAGAATAATGGAGGGAAACAGTCAGATCTCCAAATCTGCACACTTGGGTGGTGCGGCAGCAGCAACCATAGCCTGGGCAAGACTTCGAAAGGGGCATGGTTTATTCTATATGAGTCTGGAGATTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

159

Amino Acids

17.14

Weight (kDa)

9.57

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	19 - 141	8e-12	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	423
AciI	CCGC	2 cut(s)	225, 404
AcuI	CTGAAG	1 cut(s)	113
AfiI	CCNNNNNNNGG	3 cut(s)	214, 215, 423
AflII	CTTAAG	1 cut(s)	349
AgsI	TTSAA	3 cut(s)	17, 27, 169
AjnI	CCWGG	2 cut(s)	208, 422
AleI	CACNNNNGTG	1 cut(s)	396
AluBI	AGCT	3 cut(s)	107, 113, 275
AluI	AGCT	3 cut(s)	107, 113, 275
Alw21I	GWGCWC	1 cut(s)	144
Alw44I	GTGCAC	1 cut(s)	140
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	77, 204
ApaLI	GTGCAC	1 cut(s)	140
ApeKI	GCWGC	4 cut(s)	158, 316, 407, 410
AspS9I	GGNCC	2 cut(s)	77, 205
AsuII	TTCGAA	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	4 cut(s)	145, 303, 419, 422
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	2 cut(s)	210, 424
BfaI	CTAG	1 cut(s)	104
BfrI	CTTAAG	1 cut(s)	349
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	5 cut(s)	159, 317, 405, 408, 411
BlsI	GCNGC	5 cut(s)	160, 318, 406, 409, 412
Bme1390I	CCNGG	2 cut(s)	210, 424
BmgT120I	GGNCC	2 cut(s)	77, 205
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	210, 424
BmsI	GCATC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	129
Bpu14I	TTCGAA	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	208, 423
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 215, 423
Bse1I	ACTGG	2 cut(s)	43, 302
BseBI	CCWGG	2 cut(s)	210, 424
BseDI	CCNNGG	2 cut(s)	208, 423
BseLI	CCNNNNNNNGG	3 cut(s)	214, 215, 423
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	43, 302
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	4 cut(s)	145, 303, 419, 422
BseYI	CCCAGC	1 cut(s)	319
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	79, 206
BsiHKAI	GWGCWC	1 cut(s)	144
BslI	CCNNNNNNNGG	3 cut(s)	214, 215, 423
BsnI	GGCC	2 cut(s)	79, 206
Bsp119I	TTCGAA	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	375
BspACI	CCGC	2 cut(s)	225, 404
BspANI	GGCC	2 cut(s)	79, 206
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	207
BspT104I	TTCGAA	1 cut(s)	436
BspTI	CTTAAG	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	43, 302
BssECI	CCNNGG	2 cut(s)	208, 423
BssMI	GATC	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	210, 424
Bst4CI	ACNGT	1 cut(s)	371
BstAFI	CTTAAG	1 cut(s)	349
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstBI	TTCGAA	1 cut(s)	436
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	3 cut(s)	81, 201, 477
BstKTI	GATC	1 cut(s)	378
BstMBI	GATC	1 cut(s)	375
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 203, 227, 236, 410, 419
BstNI	CCWGG	2 cut(s)	210, 424
BstSCI	CCNGG	2 cut(s)	208, 422
BstSLI	GKGCMC	1 cut(s)	144
BstV1I	GCAGC	4 cut(s)	145, 303, 419, 422
BstX2I	RGATCY	1 cut(s)	375
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	79, 206
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	77, 205
CseI	GACGC	1 cut(s)	203
CviAII	CATG	4 cut(s)	146, 244, 313, 446
CviJI	RGCY	8 cut(s)	42, 79, 107, 113, 123, 206, 275, 422
CviKI_1	RGCY	8 cut(s)	42, 79, 107, 113, 123, 206, 275, 422
DdeI	CTNAG	3 cut(s)	81, 201, 477
DpnI	GATC	1 cut(s)	377
DpnII	GATC	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	208, 422
EcoRV	GATATC	1 cut(s)	346
FaeI	CATG	4 cut(s)	149, 247, 316, 449
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	4 cut(s)	145, 243, 312, 445
Fnu4HI	GCNGC	5 cut(s)	159, 317, 405, 408, 411
Fsp4HI	GCNGC	5 cut(s)	159, 317, 405, 408, 411
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	5 cut(s)	159, 317, 405, 408, 411
GsaI	CCCAGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	79, 206
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	149, 247, 316, 449
HinfI	GANTC	3 cut(s)	172, 324, 463
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	160, 272
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4V	TGCA	3 cut(s)	142, 161, 389
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 203, 227, 236, 410, 419
HpyF3I	CTNAG	3 cut(s)	81, 201, 477
Hsp92II	CATG	4 cut(s)	149, 247, 316, 449
Kzo9I	GATC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	4 cut(s)	145, 303, 419, 422
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	104
MalI	GATC	1 cut(s)	377
MboI	GATC	1 cut(s)	375
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	472
MnlI	CCTC	2 cut(s)	290, 355
MseI	TTAA	2 cut(s)	234, 350
MslI	CAYNNNNRTG	1 cut(s)	396
MspCI	CTTAAG	1 cut(s)	349
MspR9I	CCNGG	2 cut(s)	210, 424
MvaI	CCWGG	2 cut(s)	210, 424
MwoI	GCNNNNNNNGC	6 cut(s)	155, 203, 227, 236, 410, 419
NdeII	GATC	1 cut(s)	375
NlaIII	CATG	4 cut(s)	149, 247, 316, 449
NlaIV	GGNNCC	1 cut(s)	207
NspV	TTCGAA	1 cut(s)	436
OliI	CACNNNNGTG	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	172, 324
PflMI	CCANNNNNTGG	1 cut(s)	423
PkrI	GCNGC	5 cut(s)	160, 318, 406, 409, 412
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
Psp6I	CCWGG	2 cut(s)	208, 422
PspFI	CCCAGC	1 cut(s)	319
PspGI	CCWGG	2 cut(s)	208, 422
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	77, 205
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	375
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	234, 350
SatI	GCNGC	5 cut(s)	159, 317, 405, 408, 411
Sau3AI	GATC	1 cut(s)	375
Sau96I	GGNCC	2 cut(s)	77, 205
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	2 cut(s)	210, 424
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	3 cut(s)	109, 115, 277
SfaNI	GCATC	1 cut(s)	170
SfuI	TTCGAA	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	2 cut(s)	225, 404
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	208, 422
TaaI	ACNGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	436
TasI	AATT	1 cut(s)	333
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	2 cut(s)	172, 324
Tru1I	TTAA	2 cut(s)	234, 350
Tru9I	TTAA	2 cut(s)	234, 350
TseI	GCWGC	4 cut(s)	158, 316, 407, 410
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	423
Vha464I	CTTAAG	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.