Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Forward (+)

58425904 .. 58426805

Gene Structure 902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0456800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGTACTATGGCACATATATGGTGCTCGCAGAGATATGGAAATGGGCCTGAAGATGAACTACCCCTTGAATCACAAGGAGACTACACCAGAGACATTGGCTATTTGAAGTTTGCAAATTACACGGTGAATGTGAAAGATGGAAGCTCATATGACAACTTGTTGAACAATATCTGGTATCAACCAGAGGAAATCTTCCCCCTCATTGGAACTCCAGAAGAAAGAGAGCATGCCTTCTGGGTTGAGGTTGATCCCACCTACTACGAAATTGCCAAAAAACTTGAGGTAATCAATTACGTACTTAGGCTTAAACTTATTCATTCGGAAGATCCTGCTATATGTATATACGTTTTTGTGAGATTAACAGTCAACCAAAGACCTACTGAATCAATAGCTCACTTAAAGCAAAATATGTCTTTTATAGCCATTAGGGCTCTCTCAGACTTCGCCGGTAGCTCCTCCGATTCGAACGAGGCTGATACCTTCATCACTCTTGCTGCAAGTAATTCGGTTATAGTTCTCTTGGAATTTATCTCAGAGTTGTCAGCTGCTACTTTATCTAAGAGCACCATCCCCGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

194

Amino Acids

21.94

Weight (kDa)

4.66

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	245, 323
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	2 cut(s)	7, 300
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	71, 109, 166
AluBI	AGCT	4 cut(s)	147, 395, 456, 548
AluI	AGCT	4 cut(s)	147, 395, 456, 548
Alw21I	GWGCWC	2 cut(s)	29, 569
Alw26I	GTCTC	2 cut(s)	75, 87
AlwI	GGATC	2 cut(s)	245, 323
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	497, 548
ApoI	RAATTY	1 cut(s)	527
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	139
AsuII	TTCGAA	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	436
BarI	GAAGNNNNNNTAC	2 cut(s)	45, 77
Bbv12I	GWGCWC	2 cut(s)	29, 569
BbvI	GCAGC	2 cut(s)	484, 535
BccI	CCATC	2 cut(s)	134, 578
BcgI	CGANNNNNNTGC	2 cut(s)	489, 523
BcoDI	GTCTC	2 cut(s)	75, 87
BglI	GCCNNNNNGGC	1 cut(s)	431
BisI	GCNGC	2 cut(s)	498, 549
BlsI	GCNGC	2 cut(s)	499, 550
BmcAI	AGTACT	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse118I	RCCGGY	1 cut(s)	449
BseGI	GGATG	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	453, 549
BseRI	GAGGAG	1 cut(s)	448
BseXI	GCAGC	2 cut(s)	484, 535
BshFI	GGCC	1 cut(s)	49
BsiHKAI	GWGCWC	2 cut(s)	29, 569
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	75, 87
BsnI	GGCC	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	3 cut(s)	29, 436, 569
Bsp143I	GATC	2 cut(s)	250, 328
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	2 cut(s)	452, 548
BspPI	GGATC	2 cut(s)	245, 323
BspT104I	TTCGAA	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	449
BssMI	GATC	2 cut(s)	250, 328
Bst4CI	ACNGT	2 cut(s)	127, 367
BstBAI	YACGTR	1 cut(s)	298
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	29, 231
BstDEI	CTNAG	4 cut(s)	302, 439, 535, 561
BstF5I	GGATG	1 cut(s)	570
BstKTI	GATC	2 cut(s)	253, 331
BstMAI	GTCTC	2 cut(s)	75, 87
BstMBI	GATC	2 cut(s)	250, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	233
BstSNI	TACGTA	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	484, 535
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	570
Cac8I	GCNNGC	2 cut(s)	29, 231
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	6, 299
CviAII	CATG	1 cut(s)	230
CviQI	GTAC	2 cut(s)	6, 299
DdeI	CTNAG	4 cut(s)	302, 439, 535, 561
DpnI	GATC	2 cut(s)	252, 330
DpnII	GATC	2 cut(s)	250, 328
Eco105I	TACGTA	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	436
FaeI	CATG	1 cut(s)	233
FatI	CATG	1 cut(s)	229
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	498, 549
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	2 cut(s)	498, 549
GluI	GCNGC	2 cut(s)	498, 549
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	1 cut(s)	450
Hin1II	CATG	1 cut(s)	233
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	3 cut(s)	71, 386, 464
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	4 cut(s)	325, 442, 463, 538
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	2 cut(s)	244, 493
HpyCH4III	ACNGT	2 cut(s)	127, 367
HpyCH4IV	ACGT	2 cut(s)	297, 348
HpyCH4V	TGCA	2 cut(s)	116, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	4 cut(s)	302, 439, 535, 561
HpySE526I	ACGT	2 cut(s)	297, 348
Hsp92II	CATG	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	250, 328
LmnI	GCTCC	1 cut(s)	461
LpnPI	CCDG	8 cut(s)	63, 103, 160, 198, 223, 228, 345, 463
Lsp1109I	GCAGC	2 cut(s)	484, 535
MaeII	ACGT	2 cut(s)	297, 348
MalI	GATC	2 cut(s)	252, 330
MboI	GATC	2 cut(s)	250, 328
MboII	GAAGA	4 cut(s)	65, 187, 230, 338
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	3 cut(s)	29, 436, 569
MluCI	AATT	5 cut(s)	118, 267, 292, 505, 527
MnlI	CCTC	6 cut(s)	181, 212, 238, 277, 466, 469
MseI	TTAA	3 cut(s)	309, 362, 401
MslI	CAYNNNNRTG	1 cut(s)	19
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	2 cut(s)	250, 328
NlaIII	CATG	1 cut(s)	233
NspI	RCATGY	1 cut(s)	233
NspV	TTCGAA	1 cut(s)	467
PaeI	GCATGC	1 cut(s)	233
PfeI	GAWTC	3 cut(s)	71, 386, 464
PkrI	GCNGC	2 cut(s)	499, 550
Ppu21I	YACGTR	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	2 cut(s)	7, 300
RsaNI	GTAC	2 cut(s)	6, 299
RseI	CAYNNNNRTG	1 cut(s)	19
SaqAI	TTAA	3 cut(s)	309, 362, 401
SatI	GCNGC	2 cut(s)	498, 549
Sau3AI	GATC	2 cut(s)	250, 328
Sau96I	GGNCC	1 cut(s)	47
ScaI	AGTACT	1 cut(s)	7
SduI	GDGCHC	3 cut(s)	29, 436, 569
SfuI	TTCGAA	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SnaBI	TACGTA	1 cut(s)	298
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	5 cut(s)	118, 267, 292, 505, 527
TaaI	ACNGT	2 cut(s)	127, 367
TaiI	ACGT	2 cut(s)	300, 351
TaqI	TCGA	1 cut(s)	467
TasI	AATT	5 cut(s)	118, 267, 292, 505, 527
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	3 cut(s)	71, 386, 464
Tru1I	TTAA	3 cut(s)	309, 362, 401
Tru9I	TTAA	3 cut(s)	309, 362, 401
TseI	GCWGC	2 cut(s)	497, 548
TspDTI	ATGAA	3 cut(s)	72, 308, 475
XapI	RAATTY	1 cut(s)	527
XceI	RCATGY	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.