Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Forward (+)

14004275 .. 14005375

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23191

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTGTTTGGGTTTCTATTTATTTCTCCTTCCTTACCTCTCCTTCCTTACCTCTCCTTCTTTAGAAGTGTCTGGTGTCAAATCTTACCAATGAATATAAGAAAATATACCGTGGAAATTAACTTCTCCCGAGAACATTTGTCATTCTCACCACTATATAACTTGTTGTTTATGCACGGCATTGTGAGACGTAGTCTATTTATTCAAGTCACTGGGGTAAGCGGTGCTGTTAATGCCATCATGTTGCTTGATATATTCCTTCACCCCACAGCTACCCTCTACTTTGATTTTATCATACCAGTTCCTGCCATGCTGCTGGGAATCTTTCTAATTGGAAAGGATATCTTAAGAATAATGGAGGGAAACAGTCAGATCTTGGGATCTGCATACTTGGGTGGTGCGGCAGCAGCAGCCATAGCCTGGGCAAGACTTCGAAAGGGGGGTGATTTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

151

Amino Acids

16.89

Weight (kDa)

9.57

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	420
AciI	CCGC	2 cut(s)	222, 401
AclWI	GGATC	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	420
AflII	CTTAAG	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	388
AlwNI	CAGNNNCTG	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	129
ApeKI	GCWGC	4 cut(s)	313, 404, 407, 410
AsuHPI	GGTGA	3 cut(s)	141, 254, 455
AsuII	TTCGAA	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	300, 416, 419, 422
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	454
BfrI	CTTAAG	1 cut(s)	346
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	5 cut(s)	314, 402, 405, 408, 411
BlsI	GCNGC	5 cut(s)	315, 403, 406, 409, 412
Bme1390I	CCNGG	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	421
BmrI	ACTGGG	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	433
BsaJI	CCNNGG	2 cut(s)	111, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse1I	ACTGG	2 cut(s)	217, 299
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	2 cut(s)	111, 420
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseNI	ACTGG	2 cut(s)	217, 299
BseXI	GCAGC	4 cut(s)	300, 416, 419, 422
BseYI	CCCAGC	1 cut(s)	316
BsiHKCI	CYCGRG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	1 cut(s)	181
BsmBI	CGTCTC	1 cut(s)	181
BsoBI	CYCGRG	1 cut(s)	129
Bsp119I	TTCGAA	1 cut(s)	433
Bsp143I	GATC	2 cut(s)	372, 380
BspACI	CCGC	2 cut(s)	222, 401
BspPI	GGATC	1 cut(s)	388
BspT104I	TTCGAA	1 cut(s)	433
BspTI	CTTAAG	1 cut(s)	346
BsrI	ACTGG	2 cut(s)	217, 299
BssECI	CCNNGG	2 cut(s)	111, 420
BssMI	GATC	2 cut(s)	372, 380
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	2 cut(s)	112, 368
BstAFI	CTTAAG	1 cut(s)	346
BstBI	TTCGAA	1 cut(s)	433
BstDSI	CCRYGG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	375, 383
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	2 cut(s)	372, 380
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 407, 410, 416
BstNI	CCWGG	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	419
BstV1I	GCAGC	4 cut(s)	300, 416, 419, 422
BstX2I	RGATCY	2 cut(s)	372, 380
BstXI	CCANNNNNNTGG	1 cut(s)	316
BstYI	RGATCY	2 cut(s)	372, 380
BtgI	CCRYGG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	305
CviAII	CATG	2 cut(s)	241, 310
CviJI	RGCY	3 cut(s)	272, 413, 419
CviKI_1	RGCY	3 cut(s)	272, 413, 419
DpnI	GATC	2 cut(s)	374, 382
DpnII	GATC	2 cut(s)	372, 380
Eco32I	GATATC	1 cut(s)	343
Eco88I	CYCGRG	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	419
EcoRV	GATATC	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	2 cut(s)	244, 313
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	2 cut(s)	240, 309
Fnu4HI	GCNGC	5 cut(s)	314, 402, 405, 408, 411
Fsp4HI	GCNGC	5 cut(s)	314, 402, 405, 408, 411
FspBI	CTAG	1 cut(s)	454
GluI	GCNGC	5 cut(s)	314, 402, 405, 408, 411
GsaI	CCCAGC	1 cut(s)	320
Hin1II	CATG	2 cut(s)	244, 313
HinfI	GANTC	1 cut(s)	321
HphI	GGTGA	3 cut(s)	141, 254, 455
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	1 cut(s)	129
HpyAV	CCTTC	4 cut(s)	39, 53, 67, 269
HpyCH4III	ACNGT	2 cut(s)	112, 368
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	175, 386
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 407, 410, 416
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	2 cut(s)	244, 313
Kzo9I	GATC	2 cut(s)	372, 380
LpnPI	CCDG	7 cut(s)	58, 198, 302, 312, 318, 406, 433
Lsp1109I	GCAGC	4 cut(s)	300, 416, 419, 422
MaeI	CTAG	1 cut(s)	454
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	374, 382
MboI	GATC	2 cut(s)	372, 380
MflI	RGATCY	2 cut(s)	372, 380
MluCI	AATT	2 cut(s)	117, 330
MnlI	CCTC	4 cut(s)	48, 62, 287, 352
MseI	TTAA	3 cut(s)	120, 231, 347
MspCI	CTTAAG	1 cut(s)	346
MspR9I	CCNGG	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	4 cut(s)	233, 407, 410, 416
NdeII	GATC	2 cut(s)	372, 380
NlaIII	CATG	2 cut(s)	244, 313
NmuCI	GTSAC	1 cut(s)	208
NspV	TTCGAA	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	321
PflFI	GACNNNGTC	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	420
PkrI	GCNGC	5 cut(s)	315, 403, 406, 409, 412
Psp6I	CCWGG	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	372, 380
PsyI	GACNNNGTC	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	120, 231, 347
SatI	GCNGC	5 cut(s)	314, 402, 405, 408, 411
Sau3AI	GATC	2 cut(s)	372, 380
ScrFI	CCNGG	1 cut(s)	421
SetI	ASST	4 cut(s)	40, 54, 193, 274
SfuI	TTCGAA	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	2 cut(s)	117, 330
SsiI	CCGC	2 cut(s)	222, 401
SspMI	CTAG	1 cut(s)	454
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	2 cut(s)	112, 368
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	433
TasI	AATT	2 cut(s)	117, 330
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	3 cut(s)	120, 231, 347
Tru9I	TTAA	3 cut(s)	120, 231, 347
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	4 cut(s)	313, 404, 407, 410
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	217
Tth111I	GACNNNGTC	1 cut(s)	192
Van91I	CCANNNNNTGG	1 cut(s)	420
Vha464I	CTTAAG	1 cut(s)	346
XspI	CTAG	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.