Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Forward (+)

36689564 .. 36692321

Gene Structure 2758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024525

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGTTGTTCAGTTGCAAGACTTACTGCATATGACTATAGGAGAACATGGTTGCGAAGGTTATCAAGCAGTGACATGGTTTTGGTATTGGTTGTAGCTAATGTTGCTGTTTTTATTTTATGGAGGATAGCAGACCCTATATTCATGTACAAGAATTTTACTATCTCATTAAACAATTTTACAAGTGGATGTCTTCACACATTGATAACTTCTACATTTAGTCATGTTGATATTGGGCATATCATTTCTAACATGATTGGATTGTATTTTTTTGGGATCAATTTGTATCTAGCTGGAGCTATTGGTGGCTCAGTCTTTTACTTGGTGCACCATGCCTTCCTGGCTGCATCATTGAAGAATCAACCATTTGGGATTATGGACGCTTCTAAGCCCCCAGGATTGGGGGCAAGCGGTGCTGTTAATGCCATCATGTTGCTTGATATATTCCTTCACCCCACAGCTACCCTCTACTTTGATTTTATCATACCAGTTCCTGCCATGCTGCTGGGAATCTTTCTAATTGGAAATGATAACTTAAGAATAATGGAGTGTGACATTATGTTGTTGTTACGGGGAAATAGTCAGATCTCCCGATCTGCACACTTGGGTGGTGCGGCAGCAGCAGCCATAGCATGGGAAAGACTTCGAAAGGGTCGTGGTTTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

223

Amino Acids

24.37

Weight (kDa)

9.33

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	65 - 210	1.1e-15	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	633
AciI	CCGC	2 cut(s)	411, 614
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	154
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	3 cut(s)	400, 401, 633
AflII	CTTAAG	1 cut(s)	535
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	2 cut(s)	339, 394
AleI	CACNNNNGTG	1 cut(s)	606
AluBI	AGCT	4 cut(s)	98, 293, 299, 461
AluI	AGCT	4 cut(s)	98, 293, 299, 461
Alw21I	GWGCWC	1 cut(s)	330
Alw44I	GTGCAC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	494
ApaLI	GTGCAC	1 cut(s)	326
ApeKI	GCWGC	5 cut(s)	344, 502, 617, 620, 623
ApoI	RAATTY	1 cut(s)	154
Asp700I	GAANNNNTTC	1 cut(s)	642
AsuHPI	GGTGA	1 cut(s)	443
AsuII	TTCGAA	1 cut(s)	646
BaeGI	GKGCMC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	5 cut(s)	331, 489, 629, 632, 635
BccI	CCATC	1 cut(s)	434
BciT130I	CCWGG	2 cut(s)	341, 396
BfaI	CTAG	2 cut(s)	290, 667
BfmI	CTRYAG	1 cut(s)	37
BfrI	CTTAAG	1 cut(s)	535
BglI	GCCNNNNNGGC	1 cut(s)	341
BglII	AGATCT	1 cut(s)	585
BisI	GCNGC	6 cut(s)	345, 503, 615, 618, 621, 624
BlsI	GCNGC	6 cut(s)	346, 504, 616, 619, 622, 625
Bme1390I	CCNGG	2 cut(s)	341, 396
BmrFI	CCNGG	2 cut(s)	341, 396
BmsI	GCATC	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	646
BsaJI	CCNNGG	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	3 cut(s)	400, 401, 633
Bse1I	ACTGG	1 cut(s)	488
BseBI	CCWGG	2 cut(s)	341, 396
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	3 cut(s)	400, 401, 633
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	488
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	5 cut(s)	331, 489, 629, 632, 635
BseYI	CCCAGC	1 cut(s)	505
BsgI	GTGCAG	1 cut(s)	582
BsiHKAI	GWGCWC	1 cut(s)	330
BslI	CCNNNNNNNGG	3 cut(s)	400, 401, 633
Bsp119I	TTCGAA	1 cut(s)	646
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	3 cut(s)	276, 585, 593
BspACI	CCGC	2 cut(s)	411, 614
BspCNI	CTCAG	1 cut(s)	323
BspPI	GGATC	1 cut(s)	284
BspT104I	TTCGAA	1 cut(s)	646
BspTI	CTTAAG	1 cut(s)	535
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	3 cut(s)	276, 585, 593
Bst2UI	CCWGG	2 cut(s)	341, 396
BstAFI	CTTAAG	1 cut(s)	535
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	646
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	310, 387
BstF5I	GGATG	1 cut(s)	194
BstKTI	GATC	3 cut(s)	279, 588, 596
BstMBI	GATC	3 cut(s)	276, 585, 593
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 341, 413, 422, 620, 623, 629
BstNI	CCWGG	2 cut(s)	341, 396
BstSCI	CCNGG	2 cut(s)	339, 394
BstSFI	CTRYAG	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	5 cut(s)	331, 489, 629, 632, 635
BstV2I	GAAGAC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	585
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	194
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	409
CaiI	CAGNNNCTG	1 cut(s)	494
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	9 cut(s)	48, 76, 145, 224, 253, 332, 430, 499, 633
CviJI	RGCY	8 cut(s)	98, 293, 299, 309, 344, 391, 461, 626
CviKI_1	RGCY	8 cut(s)	98, 293, 299, 309, 344, 391, 461, 626
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	310, 387
DpnI	GATC	3 cut(s)	278, 587, 595
DpnII	GATC	3 cut(s)	276, 585, 593
EcoRII	CCWGG	2 cut(s)	339, 394
FaeI	CATG	9 cut(s)	51, 79, 148, 227, 256, 335, 433, 502, 636
FatI	CATG	9 cut(s)	47, 75, 144, 223, 252, 331, 429, 498, 632
FauNDI	CATATG	1 cut(s)	31
Fnu4HI	GCNGC	6 cut(s)	345, 503, 615, 618, 621, 624
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	6 cut(s)	345, 503, 615, 618, 621, 624
FspBI	CTAG	2 cut(s)	290, 667
GluI	GCNGC	6 cut(s)	345, 503, 615, 618, 621, 624
GsaI	CCCAGC	1 cut(s)	509
GsuI	CTGGAG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	389
Hin1II	CATG	9 cut(s)	51, 79, 148, 227, 256, 335, 433, 502, 636
HinfI	GANTC	2 cut(s)	358, 510
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	585
Hpy188III	TCNNGA	1 cut(s)	591
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	3 cut(s)	51, 346, 458
HpyCH4V	TGCA	5 cut(s)	17, 29, 328, 347, 599
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 341, 413, 422, 620, 623, 629
HpyF3I	CTNAG	2 cut(s)	310, 387
Hsp92II	CATG	9 cut(s)	51, 79, 148, 227, 256, 335, 433, 502, 636
Kzo9I	GATC	3 cut(s)	276, 585, 593
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	8 cut(s)	279, 326, 353, 381, 408, 491, 501, 507
Lsp1109I	GCAGC	5 cut(s)	331, 489, 629, 632, 635
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	2 cut(s)	290, 667
MaeIII	GTNAC	3 cut(s)	71, 551, 567
MalI	GATC	3 cut(s)	278, 587, 595
MboI	GATC	3 cut(s)	276, 585, 593
MboII	GAAGA	2 cut(s)	185, 367
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	4 cut(s)	154, 175, 280, 519
MnlI	CCTC	2 cut(s)	117, 476
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	3 cut(s)	170, 420, 536
MslI	CAYNNNNRTG	1 cut(s)	606
MspCI	CTTAAG	1 cut(s)	535
MspR9I	CCNGG	2 cut(s)	341, 396
MvaI	CCWGG	2 cut(s)	341, 396
MwoI	GCNNNNNNNGC	7 cut(s)	104, 341, 413, 422, 620, 623, 629
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	3 cut(s)	276, 585, 593
NlaIII	CATG	9 cut(s)	51, 79, 148, 227, 256, 335, 433, 502, 636
NmuCI	GTSAC	2 cut(s)	71, 551
NspV	TTCGAA	1 cut(s)	646
OliI	CACNNNNGTG	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	1 cut(s)	652
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	358, 510
PflMI	CCANNNNNTGG	1 cut(s)	633
PkrI	GCNGC	6 cut(s)	346, 504, 616, 619, 622, 625
Psp6I	CCWGG	2 cut(s)	339, 394
PspFI	CCCAGC	1 cut(s)	505
PspGI	CCWGG	2 cut(s)	339, 394
PstNI	CAGNNNCTG	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	585
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	606
SaqAI	TTAA	3 cut(s)	170, 420, 536
SatI	GCNGC	6 cut(s)	345, 503, 615, 618, 621, 624
Sau3AI	GATC	3 cut(s)	276, 585, 593
ScrFI	CCNGG	2 cut(s)	341, 396
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	5 cut(s)	62, 100, 295, 301, 463
SfaNI	GCATC	1 cut(s)	356
SfcI	CTRYAG	1 cut(s)	37
SfuI	TTCGAA	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
Sse9I	AATT	4 cut(s)	154, 175, 280, 519
SsiI	CCGC	2 cut(s)	411, 614
SspMI	CTAG	2 cut(s)	290, 667
StyD4I	CCNGG	2 cut(s)	339, 394
TaqI	TCGA	1 cut(s)	646
TasI	AATT	4 cut(s)	154, 175, 280, 519
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	617
TfiI	GAWTC	2 cut(s)	358, 510
Tru1I	TTAA	3 cut(s)	170, 420, 536
Tru9I	TTAA	3 cut(s)	170, 420, 536
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	71, 551
TseI	GCWGC	5 cut(s)	344, 502, 617, 620, 623
Tsp45I	GTSAC	2 cut(s)	71, 551
TspDTI	ATGAA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	76
Van91I	CCANNNNNTGG	1 cut(s)	633
Vha464I	CTTAAG	1 cut(s)	535
VneI	GTGCAC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	2 cut(s)	290, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.