Rh7BG057900

Rhomboid family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001329
Physical Location & Seq
Reverse (-)
3849068 .. 3853476
4409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG057900.1

Sequence Viewer

Length: 501 bp
ATGGTTTTGGGATTGGTTGTAGCTAATGTTGCTGTTTTTCTTTTATGGAGGATAGCAGACCCTATATTCATGTACAAGAATTTTACTATCTCATTAAACAATTTTACAAGTGGACGTCTTCACACATTGATAACTTCTGCATTTAGTCACGTTGATATTTGGCATATCATTTCTAACATGATTGGACTGTATTTTTTTGGGATCAATATTGGAAGAACTTTTGGGCCTGAGTTTTTGCTGAAGTTGTATCTAGCTGGAGCTATTGGTGGCTCAGTCTTTTACTTGGTGCACCATGCCTTCCTGGCTGCATCATCGAAGAATCGACCATTTGGGATTATGGACGCTTCTAATGCCCCAGGATTGGGGGCAAGCGGTGCTGTTAATGCTATCATGTTGCTTGATATATTCCTTCACCCCACAGCTACCCTCTACTTAGATTTTATCATACCAGTTCCTGCCATGCTGCTGGTAAGTGTGCTTCTATGTCGTTTGATTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid

Protein Analysis

166

Amino Acids

18.15

Weight (kDa)

8.69

Isoelectric Point (pI)

24.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 38 - 161 1.5e-20 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 118
AciI CCGC 1 cut(s) 372
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 115
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 2 cut(s) 361, 362
AjnI CCWGG 2 cut(s) 300, 355
AluBI AGCT 4 cut(s) 23, 254, 260, 422
AluI AGCT 4 cut(s) 23, 254, 260, 422
Alw21I GWGCWC 1 cut(s) 291
Alw44I GTGCAC 1 cut(s) 287
AlwI GGATC 1 cut(s) 209
AlwNI CAGNNNCTG 1 cut(s) 455
AoxI GGCC 1 cut(s) 224
ApaLI GTGCAC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 305, 463
ApoI RAATTY 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 291
BarI GAAGNNNNNNTAC 2 cut(s) 462, 494
BbsI GAAGAC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 292, 450
BciT130I CCWGG 2 cut(s) 302, 357
BfaI CTAG 1 cut(s) 251
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 2 cut(s) 306, 464
BlsI GCNGC 2 cut(s) 307, 465
Bme1390I CCNGG 2 cut(s) 302, 357
BmgT120I GGNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 302, 357
BmsI GCATC 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 362
Bse1I ACTGG 1 cut(s) 449
BseBI CCWGG 2 cut(s) 302, 357
BseDI CCNNGG 1 cut(s) 355
BseLI CCNNNNNNNGG 2 cut(s) 361, 362
BseMII CTCAG 2 cut(s) 219, 285
BseNI ACTGG 1 cut(s) 449
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 2 cut(s) 292, 450
BshFI GGCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 361, 362
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 72
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 2 cut(s) 220, 284
BspPI GGATC 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 72
BsrI ACTGG 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 1 cut(s) 201
BssNI GRCGYC 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 302, 357
Bst4CI ACNGT 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 115
BstAPI GCANNNNNTGC 1 cut(s) 374
BstAUI TGTACA 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 3 cut(s) 228, 271, 433
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BstMWI GCNNNNNNNGC 5 cut(s) 29, 302, 350, 374, 383
BstNI CCWGG 2 cut(s) 302, 357
BstSCI CCNGG 2 cut(s) 300, 355
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 292, 450
BstV2I GAAGAC 1 cut(s) 110
BstXI CCANNNNNNTGG 1 cut(s) 466
BsuRI GGCC 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 370
CaiI CAGNNNCTG 1 cut(s) 455
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 73
CviAII CATG 5 cut(s) 70, 178, 293, 391, 460
CviJI RGCY 7 cut(s) 23, 226, 254, 260, 270, 305, 422
CviKI_1 RGCY 7 cut(s) 23, 226, 254, 260, 270, 305, 422
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 3 cut(s) 228, 271, 433
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 300, 355
FaeI CATG 5 cut(s) 73, 181, 296, 394, 463
FatI CATG 5 cut(s) 69, 177, 292, 390, 459
Fnu4HI GCNGC 2 cut(s) 306, 464
Fsp4HI GCNGC 2 cut(s) 306, 464
FspBI CTAG 1 cut(s) 251
GluI GCNGC 2 cut(s) 306, 464
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 226
HgaI GACGC 1 cut(s) 350
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 5 cut(s) 73, 181, 296, 394, 463
HinfI GANTC 1 cut(s) 319
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 2 cut(s) 113, 289
Hpy8I GTNNAC 2 cut(s) 113, 289
HpyAV CCTTC 2 cut(s) 307, 419
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 2 cut(s) 115, 150
HpyCH4V TGCA 3 cut(s) 140, 289, 308
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 302, 350, 374, 383
HpyF3I CTNAG 3 cut(s) 228, 271, 433
HpySE526I ACGT 2 cut(s) 115, 150
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 5 cut(s) 73, 181, 296, 394, 463
Kzo9I GATC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 9 cut(s) 240, 240, 287, 314, 342, 369, 452, 462, 468
Lsp1109I GCAGC 2 cut(s) 292, 450
LweI GCATC 1 cut(s) 317
MaeI CTAG 1 cut(s) 251
MaeII ACGT 2 cut(s) 115, 150
MaeIII GTNAC 1 cut(s) 146
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 3 cut(s) 110, 225, 328
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 2 cut(s) 79, 100
MnlI CCTC 2 cut(s) 42, 437
MseI TTAA 2 cut(s) 95, 381
MspR9I CCNGG 2 cut(s) 302, 357
MvaI CCWGG 2 cut(s) 302, 357
MwoI GCNNNNNNNGC 5 cut(s) 29, 302, 350, 374, 383
NdeII GATC 1 cut(s) 201
NlaIII CATG 5 cut(s) 73, 181, 296, 394, 463
NmuCI GTSAC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 2 cut(s) 307, 465
Psp6I CCWGG 2 cut(s) 300, 355
PspGI CCWGG 2 cut(s) 300, 355
PspPI GGNCC 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 455
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SaqAI TTAA 2 cut(s) 95, 381
SatI GCNGC 2 cut(s) 306, 464
Sau3AI GATC 1 cut(s) 201
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 302, 357
SduI GDGCHC 1 cut(s) 291
SetI ASST 6 cut(s) 25, 118, 153, 256, 262, 424
SfaNI GCATC 1 cut(s) 317
Sse9I AATT 2 cut(s) 79, 100
SsiI CCGC 1 cut(s) 372
SspI AATATT 1 cut(s) 208
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 300, 355
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 2 cut(s) 118, 153
TaqI TCGA 2 cut(s) 314, 322
TasI AATT 2 cut(s) 79, 100
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 2 cut(s) 95, 381
Tru9I TTAA 2 cut(s) 95, 381
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 2 cut(s) 305, 463
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 58
VneI GTGCAC 1 cut(s) 287
XapI RAATTY 1 cut(s) 79
XspI CTAG 1 cut(s) 251
ZraI GACGTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.