Rh7DG057800

Rhomboid family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001329
Physical Location & Seq
Reverse (-)
4427804 .. 4431554
3751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG057800.1

Sequence Viewer

Length: 921 bp
ATGCAGAGGATTGTTTCTGTGAAATTAGCCTCAAACCTCCCCAAAAACCTATCAACCTCCACCACCACCCAAAGCTCTTCCCTTCTCCACTTCCAACCTCACAAAACCTTCTCTCTCACGAAACCACCCCAAACCCAGACCCAAAATCACTTCTTTAGCTCCTTCCCCACAAACCCACTTCCCCATCAGCACAATCTCACTCACAAAATTCATGGCTTTCTCTCCAACCCAGTACTCAGAAAACACTTTTCTTTGGATTCCGCAAATACCCTTTTGAGGGTATCGAGCAAGAGGCTTTCGGATTGCAGGCTTGCCTTTCTCCAAAGCAAGTTTCCCAAACAGAGTTTTAACTTCAACCCAAGTCGTATTTCTAATCAGAGTGCCTGGAGAACATGGTTGCGAAGGTTATCAAGCGGTGACATGGTTTTGGGATTGGTTGTAGCTAATGTTGCTGTTTTTCTTTTATGGAGGATAGCAGACCCTATATTCATGTACAAGAATTTTACTATCTCATTAAACAATTTTACAAGTGGACGTCTTCACACATTGATAACTTCTGCATTTAGTCACGTTGATATTTGGCATATCATTTCTAACATGATTGGACTGTATTTTTTTGGGATCAATATTGGAAGAACTTTTGGGCCTGAGTTTTTGCTGAAGTTGTATCTAGCTGGAGCTATTGGTGGCTCAGTCTTTTACTTGGTGCACCATGCCTTCCTGGCTGCATCATCGAAGAATCGACCATTTGGGATTATGGACGCTTCCAAGGCCCCAGGATTGGGAATCTTTCTAATTGGAAAGGATATCTTAAGAATAATGGAGGGAAACAGTCAGATCTCAGGATCTGCACACTTGGGCGGTGCAGCAGTAGCAGCCATAGCCTGGGCAAGACTTCGAAAGGGGCGTGGTTTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid

Protein Analysis

306

Amino Acids

34.05

Weight (kDa)

11.31

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 178 - 239 2.2e-13 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 538
AccB7I CCANNNNNTGG 1 cut(s) 885
AciI CCGC 3 cut(s) 261, 414, 861
AclWI GGATC 2 cut(s) 629, 853
AcsI RAATTY 2 cut(s) 207, 499
AcuI CTGAAG 1 cut(s) 680
AcyI GRCGYC 1 cut(s) 535
AfaI GTAC 2 cut(s) 234, 494
AfiI CCNNNNNNNGG 5 cut(s) 276, 277, 781, 782, 885
AflII CTTAAG 1 cut(s) 811
AgsI TTSAA 1 cut(s) 355
AjnI CCWGG 4 cut(s) 383, 720, 775, 884
AjuI GAANNNNNNNTTGG 4 cut(s) 315, 347, 352, 384
AluBI AGCT 5 cut(s) 75, 159, 443, 674, 680
AluI AGCT 5 cut(s) 75, 159, 443, 674, 680
Alw21I GWGCWC 1 cut(s) 711
Alw44I GTGCAC 1 cut(s) 707
AlwI GGATC 2 cut(s) 629, 853
AlwNI CAGNNNCTG 1 cut(s) 848
AoxI GGCC 2 cut(s) 644, 771
ApaLI GTGCAC 1 cut(s) 707
ApeKI GCWGC 3 cut(s) 725, 866, 875
ApoI RAATTY 2 cut(s) 207, 499
AspS9I GGNCC 2 cut(s) 644, 772
AsuHPI GGTGA 1 cut(s) 428
AsuII TTCGAA 1 cut(s) 898
BaeGI GKGCMC 1 cut(s) 711
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 3 cut(s) 712, 878, 887
BccI CCATC 1 cut(s) 192
BciT130I CCWGG 4 cut(s) 385, 722, 777, 886
BfaI CTAG 2 cut(s) 671, 919
BfrI CTTAAG 1 cut(s) 811
BglI GCCNNNNNGGC 1 cut(s) 722
BglII AGATCT 1 cut(s) 837
BisI GCNGC 3 cut(s) 726, 867, 876
BlsI GCNGC 3 cut(s) 727, 868, 877
BmcAI AGTACT 1 cut(s) 234
Bme1390I CCNGG 4 cut(s) 385, 722, 777, 886
BmgT120I GGNCC 2 cut(s) 644, 772
BmiI GGNNCC 1 cut(s) 774
BmrFI CCNGG 4 cut(s) 385, 722, 777, 886
BmrI ACTGGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 737
BmuI ACTGGG 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 2 cut(s) 406, 696
Bpu14I TTCGAA 1 cut(s) 898
BsaHI GRCGYC 1 cut(s) 535
BsaJI CCNNGG 3 cut(s) 768, 775, 885
Bsc4I CCNNNNNNNGG 5 cut(s) 276, 277, 781, 782, 885
Bse1I ACTGG 1 cut(s) 230
BseBI CCWGG 4 cut(s) 385, 722, 777, 886
BseDI CCNNGG 3 cut(s) 768, 775, 885
BseLI CCNNNNNNNGG 5 cut(s) 276, 277, 781, 782, 885
BseMII CTCAG 4 cut(s) 250, 639, 705, 855
BseNI ACTGG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 711
BseXI GCAGC 3 cut(s) 712, 878, 887
BsgI GTGCAG 2 cut(s) 834, 885
BshFI GGCC 2 cut(s) 646, 773
BsiHKAI GWGCWC 1 cut(s) 711
BslI CCNNNNNNNGG 5 cut(s) 276, 277, 781, 782, 885
BsnI GGCC 2 cut(s) 646, 773
Bsp119I TTCGAA 1 cut(s) 898
Bsp1286I GDGCHC 1 cut(s) 711
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 3 cut(s) 621, 837, 845
BspACI CCGC 3 cut(s) 261, 414, 861
BspANI GGCC 2 cut(s) 646, 773
BspCNI CTCAG 4 cut(s) 249, 640, 704, 854
BspLI GGNNCC 1 cut(s) 774
BspPI GGATC 2 cut(s) 629, 853
BspQI GCTCTTC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 898
BspTI CTTAAG 1 cut(s) 811
BsrGI TGTACA 1 cut(s) 492
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 3 cut(s) 768, 775, 885
BssMI GATC 3 cut(s) 621, 837, 845
BssNI GRCGYC 1 cut(s) 535
BssT1I CCWWGG 1 cut(s) 768
Bst2UI CCWGG 4 cut(s) 385, 722, 777, 886
Bst4CI ACNGT 2 cut(s) 609, 833
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 535
BstAFI CTTAAG 1 cut(s) 811
BstAUI TGTACA 1 cut(s) 492
BstBI TTCGAA 1 cut(s) 898
BstC8I GCNNGC 2 cut(s) 308, 312
BstDEI CTNAG 4 cut(s) 236, 648, 691, 841
BstKTI GATC 3 cut(s) 624, 840, 848
BstMBI GATC 3 cut(s) 621, 837, 845
BstMWI GCNNNNNNNGC 6 cut(s) 449, 722, 770, 872, 875, 881
BstNI CCWGG 4 cut(s) 385, 722, 777, 886
BstSCI CCNGG 4 cut(s) 383, 720, 775, 884
BstSLI GKGCMC 1 cut(s) 711
BstV1I GCAGC 3 cut(s) 712, 878, 887
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 2 cut(s) 837, 845
BstYI RGATCY 2 cut(s) 837, 845
BsuRI GGCC 2 cut(s) 646, 773
Cac8I GCNNGC 2 cut(s) 308, 312
CaiI CAGNNNCTG 1 cut(s) 848
Cfr13I GGNCC 2 cut(s) 644, 772
CseI GACGC 1 cut(s) 770
Csp6I GTAC 2 cut(s) 233, 493
CviAII CATG 6 cut(s) 212, 393, 421, 490, 598, 713
CviQI GTAC 2 cut(s) 233, 493
DdeI CTNAG 4 cut(s) 236, 648, 691, 841
DpnI GATC 3 cut(s) 623, 839, 847
DpnII GATC 3 cut(s) 621, 837, 845
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 768
Eco32I GATATC 1 cut(s) 808
Eco57I CTGAAG 1 cut(s) 680
EcoO109I RGGNCCY 1 cut(s) 772
EcoRII CCWGG 4 cut(s) 383, 720, 775, 884
EcoRV GATATC 1 cut(s) 808
EcoT14I CCWWGG 1 cut(s) 768
ErhI CCWWGG 1 cut(s) 768
FaeI CATG 6 cut(s) 215, 396, 424, 493, 601, 716
FalI AAGNNNNNCTT 2 cut(s) 794, 826
FatI CATG 6 cut(s) 211, 392, 420, 489, 597, 712
Fnu4HI GCNGC 3 cut(s) 726, 867, 876
Fsp4HI GCNGC 3 cut(s) 726, 867, 876
FspBI CTAG 2 cut(s) 671, 919
GluI GCNGC 3 cut(s) 726, 867, 876
GsuI CTGGAG 2 cut(s) 406, 696
HaeIII GGCC 2 cut(s) 646, 773
HgaI GACGC 1 cut(s) 770
Hin1I GRCGYC 1 cut(s) 535
Hin1II CATG 6 cut(s) 215, 396, 424, 493, 601, 716
HinfI GANTC 3 cut(s) 257, 739, 786
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 2 cut(s) 533, 709
Hpy188I TCNGA 4 cut(s) 239, 301, 378, 837
Hpy188III TCNNGA 2 cut(s) 118, 843
Hpy8I GTNNAC 2 cut(s) 533, 709
HpyAV CCTTC 5 cut(s) 92, 118, 172, 396, 727
HpyCH4III ACNGT 2 cut(s) 609, 833
HpyCH4IV ACGT 2 cut(s) 535, 570
HpyCH4V TGCA 7 cut(s) 4, 306, 560, 709, 728, 851, 866
HpyF10VI GCNNNNNNNGC 6 cut(s) 449, 722, 770, 872, 875, 881
HpyF3I CTNAG 4 cut(s) 236, 648, 691, 841
HpySE526I ACGT 2 cut(s) 535, 570
Hsp92I GRCGYC 1 cut(s) 535
Hsp92II CATG 6 cut(s) 215, 396, 424, 493, 601, 716
Kzo9I GATC 3 cut(s) 621, 837, 845
LguI GCTCTTC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 164, 677
Lsp1109I GCAGC 3 cut(s) 712, 878, 887
LweI GCATC 1 cut(s) 737
MaeI CTAG 2 cut(s) 671, 919
MaeII ACGT 2 cut(s) 535, 570
MaeIII GTNAC 2 cut(s) 416, 566
MalI GATC 3 cut(s) 623, 839, 847
MboI GATC 3 cut(s) 621, 837, 845
MboII GAAGA 4 cut(s) 69, 530, 645, 748
MflI RGATCY 2 cut(s) 837, 845
MhlI GDGCHC 1 cut(s) 711
MluCI AATT 5 cut(s) 23, 207, 499, 520, 795
MmeI TCCRAC 2 cut(s) 118, 249
MnlI CCTC 8 cut(s) 40, 47, 67, 108, 270, 285, 462, 817
MseI TTAA 3 cut(s) 348, 515, 812
MspCI CTTAAG 1 cut(s) 811
MspR9I CCNGG 4 cut(s) 385, 722, 777, 886
MvaI CCWGG 4 cut(s) 385, 722, 777, 886
MwoI GCNNNNNNNGC 6 cut(s) 449, 722, 770, 872, 875, 881
NdeII GATC 3 cut(s) 621, 837, 845
NlaIII CATG 6 cut(s) 215, 396, 424, 493, 601, 716
NlaIV GGNNCC 1 cut(s) 774
NmuCI GTSAC 2 cut(s) 416, 566
NspV TTCGAA 1 cut(s) 898
PciSI GCTCTTC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 904
PfeI GAWTC 3 cut(s) 257, 739, 786
PflMI CCANNNNNTGG 1 cut(s) 885
PkrI GCNGC 3 cut(s) 727, 868, 877
Psp6I CCWGG 4 cut(s) 383, 720, 775, 884
PspGI CCWGG 4 cut(s) 383, 720, 775, 884
PspN4I GGNNCC 1 cut(s) 774
PspPI GGNCC 2 cut(s) 644, 772
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 2 cut(s) 837, 845
RsaI GTAC 2 cut(s) 234, 494
RsaNI GTAC 2 cut(s) 233, 493
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 3 cut(s) 348, 515, 812
SatI GCNGC 3 cut(s) 726, 867, 876
Sau3AI GATC 3 cut(s) 621, 837, 845
Sau96I GGNCC 2 cut(s) 644, 772
ScaI AGTACT 1 cut(s) 234
ScrFI CCNGG 4 cut(s) 385, 722, 777, 886
SduI GDGCHC 1 cut(s) 711
SfaNI GCATC 1 cut(s) 737
SfuI TTCGAA 1 cut(s) 898
SmlI CTYRAG 1 cut(s) 811
SmoI CTYRAG 1 cut(s) 811
Sse9I AATT 5 cut(s) 23, 207, 499, 520, 795
SsiI CCGC 3 cut(s) 261, 414, 861
SspI AATATT 1 cut(s) 628
SspMI CTAG 2 cut(s) 671, 919
StyD4I CCNGG 4 cut(s) 383, 720, 775, 884
StyI CCWWGG 1 cut(s) 768
TaaI ACNGT 2 cut(s) 609, 833
TaiI ACGT 2 cut(s) 538, 573
TaqI TCGA 4 cut(s) 284, 734, 742, 898
TasI AATT 5 cut(s) 23, 207, 499, 520, 795
TatI WGTACW 2 cut(s) 232, 492
TfiI GAWTC 3 cut(s) 257, 739, 786
Tru1I TTAA 3 cut(s) 348, 515, 812
Tru9I TTAA 3 cut(s) 348, 515, 812
TseFI GTSAC 2 cut(s) 416, 566
TseI GCWGC 3 cut(s) 725, 866, 875
Tsp45I GTSAC 2 cut(s) 416, 566
TspDTI ATGAA 2 cut(s) 200, 478
Van91I CCANNNNNTGG 1 cut(s) 885
Vha464I CTTAAG 1 cut(s) 811
VneI GTGCAC 1 cut(s) 707
XapI RAATTY 2 cut(s) 207, 499
XspI CTAG 2 cut(s) 671, 919
ZraI GACGTC 1 cut(s) 536
ZrmI AGTACT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.