Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Forward (+)

14001956 .. 14003110

Gene Structure 1155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23189

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGTTTTGGGATTGGTTGTAGCTAATGTTGCTGTTTTTCTTTTATGGAGGATAGCAGACCCTATATTCATGTACAAGAATTTTACTATCTCATTAAACAATTTTACAATTGGACGTCTTCACACATTGATAACTTCTGCATTTAGTCACGTTGATATTGGGCATATCATTTCTAACATGATTGGACTATTGGATTTCACTTTTGGGCTTGAATTTTTGCTGAAATTGTATCTAGCTAGAGCTATTGGTGGCTCAGTCTTTTACTTGGTGCACCATGCCTTCCTGGCTGCATCATTGAAGAATCAACCATTTGGGATTATGGACGCTTCCAAGGCCCCAGTATTGGTATGTTATCAACCAAGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

122

Amino Acids

13.57

Weight (kDa)

8.85

Isoelectric Point (pI)

22.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	39 - 93	8.6e-06	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	118
AcsI	RAATTY	2 cut(s)	79, 212
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	212, 298
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	4 cut(s)	23, 236, 242, 363
AluI	AGCT	4 cut(s)	23, 236, 242, 363
Alw21I	GWGCWC	1 cut(s)	273
Alw44I	GTGCAC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	333
ApaLI	GTGCAC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	2 cut(s)	79, 212
AspS9I	GGNCC	1 cut(s)	334
BaeGI	GKGCMC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	284
BfaI	CTAG	2 cut(s)	233, 237
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	284
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	299
BmuI	ACTGGG	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	338
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	274
BshFI	GGCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	343
BsnI	GGCC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp1407I	TGTACA	1 cut(s)	72
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	336
BsrGI	TGTACA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	330
BssNI	GRCGYC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	115
BstAUI	TGTACA	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 284, 332
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	334
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	3 cut(s)	70, 178, 275
CviJI	RGCY	8 cut(s)	23, 208, 236, 242, 252, 287, 335, 363
CviKI_1	RGCY	8 cut(s)	23, 208, 236, 242, 252, 287, 335, 363
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	73, 181, 278
FaiI	YATR	8 cut(s)	46, 65, 71, 165, 179, 276, 320, 349
FatI	CATG	3 cut(s)	69, 177, 274
Fnu4HI	GCNGC	1 cut(s)	288
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	2 cut(s)	233, 237
GluI	GCNGC	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	335
HgaI	GACGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	73, 181, 278
HinfI	GANTC	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	115, 150
HpyCH4V	TGCA	3 cut(s)	140, 271, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 284, 332
HpyF3I	CTNAG	1 cut(s)	253
HpySE526I	ACGT	2 cut(s)	115, 150
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	3 cut(s)	73, 181, 278
LpnPI	CCDG	3 cut(s)	269, 296, 351
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	299
MaeI	CTAG	2 cut(s)	233, 237
MaeII	ACGT	2 cut(s)	115, 150
MaeIII	GTNAC	1 cut(s)	146
MboII	GAAGA	2 cut(s)	110, 310
MfeI	CAATTG	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	5 cut(s)	79, 100, 108, 212, 224
MnlI	CCTC	1 cut(s)	42
MseI	TTAA	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	29, 284, 332
NlaIII	CATG	3 cut(s)	73, 181, 278
NlaIV	GGNNCC	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	334
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	1 cut(s)	288
Sau96I	GGNCC	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	6 cut(s)	25, 118, 153, 238, 244, 365
SfaNI	GCATC	1 cut(s)	299
Sse9I	AATT	5 cut(s)	79, 100, 108, 212, 224
SspMI	CTAG	2 cut(s)	233, 237
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	330
TaiI	ACGT	2 cut(s)	118, 153
TasI	AATT	5 cut(s)	79, 100, 108, 212, 224
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	58
VneI	GTGCAC	1 cut(s)	269
XapI	RAATTY	2 cut(s)	79, 212
XspI	CTAG	2 cut(s)	233, 237
ZraI	GACGTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.