Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Reverse (-)

4434973 .. 4441058

Gene Structure 6086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG058000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCAGGAACCGGGCAGAAAAGAGAATATCAGTATCAAACCAAAATTGGGGTTCTTTCTAATTGGGAAGGATATTCCAAGTCTAATTGGGAAGGATATTCCAAGGATAATGGAGGGAAACATTCATGTCTCAGGATCTGGGCACTTGGGCGGCACTGCAGTAGCAGCCATAGCCTGGGTACGACTTCGGATGGGGCTTCGGGTATTCTAAATGGTTCTGCAGATTACTTGGCAACATTTTGTAGATGTTCTGGGAGATCATGGCATGGGAGGGTATCCAGTAATGACGTGCTTTTAGGATTGATTATAGCTAATTTTGCTGTTTTTCTTTTATGGAAGATAGCAGATCCTGTATTCATGGTCAAGAATTTTACTCTCTCACTATACATTATCACAAGTGGACGTCTTCACACATTGATAACTTCTGCATTTAGTCACTTGGTTGTTGAGGATATTCTTCTCAACATGTTCCTACTCTCTGTCTTTGGGAAAGATGTTGGAAGAACTTTTGGCCCTGAATTTTTGCTAAAGTTGTATCTAGCTGGAGCTATTGGTGGCTCAGTCTTTTACTTGGTGCAATATGTCCTGCTTGCATCAAAGGACGGAGACCTTTCAAACAGTCCCATATTGACATTGATGGCCTATCAAATTGGGGATTCCATTTCAAGGATCATACAGGGAAACAGTAGCTCAGGAAATGCACATGTGGGCGGCGCCGCAGTAGCAACTATTGCCTGGGTACGACTTCGTATGGGGCTTCGGGTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

256

Amino Acids

27.82

Weight (kDa)

9.3

Isoelectric Point (pI)

23.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	134 - 192	1.1e-09	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	406
AccB1I	GGYRCC	1 cut(s)	713
AccB7I	CCANNNNNTGG	1 cut(s)	175
AciI	CCGC	3 cut(s)	151, 711, 717
AclWI	GGATC	3 cut(s)	143, 341, 677
AcsI	RAATTY	2 cut(s)	367, 518
AcyI	GRCGYC	2 cut(s)	403, 714
AfaI	GTAC	2 cut(s)	181, 741
AfiI	CCNNNNNNNGG	3 cut(s)	48, 175, 666
AflIII	ACRYGT	2 cut(s)	465, 703
AgsI	TTSAA	2 cut(s)	615, 666
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	2 cut(s)	174, 734
AluBI	AGCT	4 cut(s)	311, 542, 548, 690
AluI	AGCT	4 cut(s)	311, 542, 548, 690
Alw26I	GTCTC	2 cut(s)	134, 600
AlwI	GGATC	3 cut(s)	143, 341, 677
AlwNI	CAGNNNCTG	2 cut(s)	138, 350
AoxI	GGCC	2 cut(s)	511, 639
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	2 cut(s)	367, 518
AspLEI	GCGC	1 cut(s)	716
AspS9I	GGNCC	1 cut(s)	512
AsuC2I	CCSGG	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	713
BbsI	GAAGAC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	2 cut(s)	185, 631
BciT130I	CCWGG	2 cut(s)	176, 736
BciVI	GTATCC	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	2 cut(s)	134, 600
BfaI	CTAG	1 cut(s)	539
BfmI	CTRYAG	2 cut(s)	157, 219
BfoI	RGCGCY	1 cut(s)	717
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	4 cut(s)	152, 166, 712, 717
BlsI	GCNGC	4 cut(s)	153, 167, 713, 718
Bme1390I	CCNGG	3 cut(s)	13, 176, 736
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	2 cut(s)	10, 715
BmrFI	CCNGG	3 cut(s)	13, 176, 736
BmsI	GCATC	1 cut(s)	602
BpiI	GAAGAC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	691
BpuMI	CCSGG	1 cut(s)	13
BsaHI	GRCGYC	2 cut(s)	403, 714
BsaI	GGTCTC	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	102, 175, 735
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 175, 666
Bse1I	ACTGG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	176, 736
BseDI	CCNNGG	3 cut(s)	102, 175, 735
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	3 cut(s)	48, 175, 666
BseMII	CTCAG	3 cut(s)	145, 573, 705
BseNI	ACTGG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	177
BshFI	GGCC	2 cut(s)	513, 641
BshNI	GGYRCC	1 cut(s)	713
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	3 cut(s)	48, 175, 666
BsmAI	GTCTC	2 cut(s)	134, 600
BsmFI	GGGAC	1 cut(s)	606
BsnI	GGCC	2 cut(s)	513, 641
Bso31I	GGTCTC	1 cut(s)	600
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	4 cut(s)	135, 257, 346, 669
BspACI	CCGC	3 cut(s)	151, 711, 717
BspANI	GGCC	2 cut(s)	513, 641
BspCNI	CTCAG	3 cut(s)	144, 572, 704
BspLI	GGNNCC	2 cut(s)	10, 715
BspMAI	CTGCAG	2 cut(s)	161, 223
BspPI	GGATC	3 cut(s)	143, 341, 677
BspT107I	GGYRCC	1 cut(s)	713
BspTNI	GGTCTC	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	3 cut(s)	102, 175, 735
BssMI	GATC	4 cut(s)	135, 257, 346, 669
BssNI	GRCGYC	2 cut(s)	403, 714
BssT1I	CCWWGG	1 cut(s)	102
Bst2UI	CCWGG	2 cut(s)	176, 736
Bst4CI	ACNGT	2 cut(s)	620, 686
BstACI	GRCGYC	2 cut(s)	403, 714
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	3 cut(s)	131, 559, 691
BstF5I	GGATG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	1 cut(s)	716
BstKTI	GATC	4 cut(s)	138, 260, 349, 672
BstMAI	GTCTC	2 cut(s)	134, 600
BstMBI	GATC	4 cut(s)	135, 257, 346, 669
BstMWI	GCNNNNNNNGC	5 cut(s)	165, 171, 317, 722, 731
BstNI	CCWGG	2 cut(s)	176, 736
BstNSI	RCATGY	2 cut(s)	469, 707
BstSCI	CCNGG	3 cut(s)	11, 174, 734
BstSFI	CTRYAG	2 cut(s)	157, 219
BstSLI	GKGCMC	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	177
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	2 cut(s)	135, 346
BstYI	RGATCY	2 cut(s)	135, 346
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	513, 641
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	591
CaiI	CAGNNNCTG	2 cut(s)	138, 350
CfoI	GCGC	1 cut(s)	716
Cfr13I	GGNCC	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	180, 740
CviAII	CATG	6 cut(s)	126, 261, 266, 358, 466, 704
CviQI	GTAC	2 cut(s)	180, 740
DdeI	CTNAG	3 cut(s)	131, 559, 691
DinI	GGCGCC	1 cut(s)	715
DpnI	GATC	4 cut(s)	137, 259, 348, 671
DpnII	GATC	4 cut(s)	135, 257, 346, 669
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	600
EcoRII	CCWGG	2 cut(s)	174, 734
EcoT14I	CCWWGG	1 cut(s)	102
EgeI	GGCGCC	1 cut(s)	715
EheI	GGCGCC	1 cut(s)	715
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	6 cut(s)	129, 264, 269, 361, 469, 707
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	6 cut(s)	125, 260, 265, 357, 465, 703
Fnu4HI	GCNGC	4 cut(s)	152, 166, 712, 717
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	152, 166, 712, 717
FspBI	CTAG	1 cut(s)	539
GlaI	GCGC	1 cut(s)	715
GluI	GCNGC	4 cut(s)	152, 166, 712, 717
GsuI	CTGGAG	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	717
HaeIII	GGCC	2 cut(s)	513, 641
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	1 cut(s)	716
Hin1I	GRCGYC	2 cut(s)	403, 714
Hin1II	CATG	6 cut(s)	129, 264, 269, 361, 469, 707
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HinfI	GANTC	1 cut(s)	656
HpaII	CCGG	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	3 cut(s)	133, 364, 693
Hpy8I	GTNNAC	1 cut(s)	401
HpyAV	CCTTC	2 cut(s)	62, 86
HpyCH4III	ACNGT	2 cut(s)	620, 686
HpyCH4IV	ACGT	2 cut(s)	288, 403
HpyCH4V	TGCA	6 cut(s)	159, 221, 428, 577, 593, 701
HpyF10VI	GCNNNNNNNGC	5 cut(s)	165, 171, 317, 722, 731
HpyF3I	CTNAG	3 cut(s)	131, 559, 691
HpySE526I	ACGT	2 cut(s)	288, 403
Hsp92I	GRCGYC	2 cut(s)	403, 714
Hsp92II	CATG	6 cut(s)	129, 264, 269, 361, 469, 707
HspAI	GCGC	1 cut(s)	714
KasI	GGCGCC	1 cut(s)	713
Kzo9I	GATC	4 cut(s)	135, 257, 346, 669
LmnI	GCTCC	1 cut(s)	545
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	2 cut(s)	288, 403
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	4 cut(s)	137, 259, 348, 671
MboI	GATC	4 cut(s)	135, 257, 346, 669
MboII	GAAGA	4 cut(s)	349, 398, 449, 513
MflI	RGATCY	2 cut(s)	135, 346
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	7 cut(s)	45, 61, 85, 313, 367, 518, 648
Mly113I	GGCGCC	1 cut(s)	714
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	3 cut(s)	107, 264, 442
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	3 cut(s)	13, 176, 736
MvaI	CCWGG	2 cut(s)	176, 736
MwoI	GCNNNNNNNGC	5 cut(s)	165, 171, 317, 722, 731
NarI	GGCGCC	1 cut(s)	714
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	4 cut(s)	135, 257, 346, 669
NlaIII	CATG	6 cut(s)	129, 264, 269, 361, 469, 707
NlaIV	GGNNCC	2 cut(s)	10, 715
NmuCI	GTSAC	1 cut(s)	434
NspI	RCATGY	2 cut(s)	469, 707
PciI	ACATGT	2 cut(s)	465, 703
PfeI	GAWTC	1 cut(s)	656
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	4 cut(s)	153, 167, 713, 718
PluTI	GGCGCC	1 cut(s)	717
PscI	ACATGT	2 cut(s)	465, 703
Psp6I	CCWGG	2 cut(s)	174, 734
PspGI	CCWGG	2 cut(s)	174, 734
PspN4I	GGNNCC	2 cut(s)	10, 715
PspPI	GGNCC	1 cut(s)	512
PstI	CTGCAG	2 cut(s)	161, 223
PstNI	CAGNNNCTG	2 cut(s)	138, 350
PsuI	RGATCY	2 cut(s)	135, 346
RsaI	GTAC	2 cut(s)	181, 741
RsaNI	GTAC	2 cut(s)	180, 740
SatI	GCNGC	4 cut(s)	152, 166, 712, 717
Sau3AI	GATC	4 cut(s)	135, 257, 346, 669
Sau96I	GGNCC	1 cut(s)	512
ScrFI	CCNGG	3 cut(s)	13, 176, 736
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	7 cut(s)	291, 313, 406, 544, 550, 612, 692
SfaNI	GCATC	1 cut(s)	602
SfcI	CTRYAG	2 cut(s)	157, 219
SfoI	GGCGCC	1 cut(s)	715
Sse9I	AATT	7 cut(s)	45, 61, 85, 313, 367, 518, 648
SsiI	CCGC	3 cut(s)	151, 711, 717
SspDI	GGCGCC	1 cut(s)	713
SspMI	CTAG	1 cut(s)	539
StyD4I	CCNGG	3 cut(s)	11, 174, 734
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	620, 686
TaiI	ACGT	2 cut(s)	291, 406
TasI	AATT	7 cut(s)	45, 61, 85, 313, 367, 518, 648
TauI	GCSGC	3 cut(s)	154, 714, 719
TfiI	GAWTC	1 cut(s)	656
TscAI	CASTG	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	1 cut(s)	165
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	2 cut(s)	114, 346
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	1 cut(s)	161
Van91I	CCANNNNNTGG	1 cut(s)	175
XapI	RAATTY	2 cut(s)	367, 518
XceI	RCATGY	2 cut(s)	469, 707
XspI	CTAG	1 cut(s)	539
ZraI	GACGTC	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.