Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Reverse (-)

4299353 .. 4301319

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG059700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTTCCTACTCTCTGTCTTTGGGAAAGATGTTGGAAGAACTTTTGGCCCTGAATTTTTGCTAAAGTTGTATCTAGCTGGAGCTATTGGTGGCTCAGTCTTTTACTTGGTGCAATATGTCCTGCTCGCATCAAAGGACGGAGACCTTTCAAACAGTCCCATATTGACATTGGGCGCACAAGGTGCTGTTACTGCTGTGATGTACTTTGACTTGTTACAACTCTGCACACGCATTCCAGCTTTCTACTATCTGAACATATTACTGATGGCCTATCGAATTGGGGATTCCATTTCAAGGATCATACAGGGAAACAGTAGCTCAGGAAATGCACATGTGGGCGGCGCCGCAGTAGCAACTATTGCCTGGGTACGACTTCGGATGGGGCTTCGGGTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

132

Amino Acids

14.26

Weight (kDa)

9.46

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	1 - 123	6e-09	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	341
AciI	CCGC	2 cut(s)	339, 345
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	342
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	203, 369
AfiI	CCNNNNNNNGG	1 cut(s)	294
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	150, 294
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	4 cut(s)	77, 83, 239, 318
AluI	AGCT	4 cut(s)	77, 83, 239, 318
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	2 cut(s)	46, 267
ApoI	RAATTY	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	176, 344
AspS9I	GGNCC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	341
BccI	CCATC	2 cut(s)	259, 373
BciT130I	CCWGG	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	345
BisI	GCNGC	2 cut(s)	340, 345
BlsI	GCNGC	2 cut(s)	341, 346
Bme1390I	CCNGG	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	108, 333
BsgI	GTGCAG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	48, 269
BshNI	GGYRCC	1 cut(s)	341
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	48, 269
Bso31I	GGTCTC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	2 cut(s)	339, 345
BspANI	GGCC	2 cut(s)	48, 269
BspCNI	CTCAG	2 cut(s)	107, 332
BspLI	GGNNCC	1 cut(s)	343
BspPI	GGATC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	1 cut(s)	297
BssNI	GRCGYC	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	155, 314
BstACI	GRCGYC	1 cut(s)	342
BstAPI	GCANNNNNTGC	2 cut(s)	182, 359
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	94, 319
BstF5I	GGATG	1 cut(s)	384
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	2 cut(s)	176, 344
BstKTI	GATC	1 cut(s)	300
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 191, 350, 359
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	362
BsuRI	GGCC	2 cut(s)	48, 269
BtsCI	GGATG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	2 cut(s)	176, 344
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	202, 368
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	8 cut(s)	48, 77, 83, 93, 239, 269, 318, 385
CviKI_1	RGCY	8 cut(s)	48, 77, 83, 93, 239, 269, 318, 385
CviQI	GTAC	2 cut(s)	202, 368
DdeI	CTNAG	2 cut(s)	94, 319
DinI	GGCGCC	1 cut(s)	343
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
DraIII	CACNNNGTG	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	362
EgeI	GGCGCC	1 cut(s)	343
EheI	GGCGCC	1 cut(s)	343
FaeI	CATG	1 cut(s)	335
FaiI	YATR	5 cut(s)	117, 161, 257, 302, 333
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	340, 345
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	2 cut(s)	340, 345
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	2 cut(s)	175, 343
GluI	GCNGC	2 cut(s)	340, 345
GsuI	CTGGAG	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	48, 269
HhaI	GCGC	2 cut(s)	176, 344
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	2 cut(s)	174, 342
HinP1I	GCGC	2 cut(s)	174, 342
HinfI	GANTC	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	252, 378
Hpy188III	TCNNGA	1 cut(s)	321
HpyCH4III	ACNGT	2 cut(s)	155, 314
HpyCH4V	TGCA	3 cut(s)	112, 225, 329
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 191, 350, 359
HpyF3I	CTNAG	2 cut(s)	94, 319
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	2 cut(s)	174, 342
KasI	GGCGCC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	8 cut(s)	63, 63, 134, 249, 290, 306, 349, 376
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	187, 213
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	1 cut(s)	48
MluCI	AATT	2 cut(s)	53, 276
Mly113I	GGCGCC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	4 cut(s)	182, 191, 350, 359
NarI	GGCGCC	1 cut(s)	342
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	1 cut(s)	343
NspI	RCATGY	1 cut(s)	335
PciI	ACATGT	1 cut(s)	331
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	341, 346
PluTI	GGCGCC	1 cut(s)	345
PscI	ACATGT	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	47
RsaI	GTAC	2 cut(s)	203, 369
RsaNI	GTAC	2 cut(s)	202, 368
SatI	GCNGC	2 cut(s)	340, 345
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	364
SetI	ASST	6 cut(s)	79, 85, 147, 184, 241, 320
SfaNI	GCATC	1 cut(s)	137
SfoI	GGCGCC	1 cut(s)	343
Sse9I	AATT	2 cut(s)	53, 276
SsiI	CCGC	2 cut(s)	339, 345
SspDI	GGCGCC	1 cut(s)	341
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	362
TaaI	ACNGT	2 cut(s)	155, 314
TaqI	TCGA	1 cut(s)	274
TasI	AATT	2 cut(s)	53, 276
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	2 cut(s)	342, 347
TfiI	GAWTC	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	153
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.