RchiOBHm_Chr7g0183341

Rhomboid family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001329
Physical Location & Seq
Reverse (-)
4261716 .. 4263249
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16357

Sequence Viewer

Length: 375 bp
ATGTACTTAGTTAGAAATTTGAGATCATGGCATGGGAGGGTATCCAGTAATGACGTGCTTTTAGGATTGATTATAGCTAATTTTGCTGTTTTTCTTTTATGGAAGATAGCAGATCCTGTATTCATGGTCAAGAATTTTACTCTCTCACTATACATTATCACAAGTGGACGTCTTCACACATTGATAACTTCTGCATTTAGTCACTTGGTTGTTGAGGATATTCTTCTCAACATGTTCCTACTCTCTGTCTTTGGGAAAGATGTTGGAAGAACTTTTGGCCCTGAATTTTTGCTAAAGTTGTATCTAGCTGGAGCTATTGGTGGCTCAGTCTTTTACTTGGTGCAATATGTCCTGCTTGCATCAAAGGTACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid

Protein Analysis

124

Amino Acids

13.9

Weight (kDa)

9.63

Isoelectric Point (pI)

25.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 56 - 114 3.1e-10 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 172
Acc65I GGTACC 1 cut(s) 367
AccB1I GGYRCC 1 cut(s) 367
AclWI GGATC 1 cut(s) 107
AcsI RAATTY 3 cut(s) 16, 133, 284
AcyI GRCGYC 1 cut(s) 169
AfaI GTAC 2 cut(s) 5, 369
AflIII ACRYGT 1 cut(s) 231
AjiI CACGTC 1 cut(s) 55
AluBI AGCT 3 cut(s) 77, 308, 314
AluI AGCT 3 cut(s) 77, 308, 314
AlwI GGATC 1 cut(s) 107
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 1 cut(s) 277
ApoI RAATTY 3 cut(s) 16, 133, 284
Asp718I GGTACC 1 cut(s) 367
AspS9I GGNCC 1 cut(s) 278
BanI GGYRCC 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 164
BciVI GTATCC 1 cut(s) 52
BfaI CTAG 1 cut(s) 305
BfuI GTATCC 1 cut(s) 52
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 369
BmsI GCATC 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 45
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 367
BsnI GGCC 1 cut(s) 279
Bsp143I GATC 2 cut(s) 23, 112
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 369
BspPI GGATC 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 367
BsrI ACTGG 1 cut(s) 45
BssMI GATC 2 cut(s) 23, 112
BssNI GRCGYC 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 2 cut(s) 7, 325
BstKTI GATC 2 cut(s) 26, 115
BstMBI GATC 2 cut(s) 23, 112
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 279
BtrI CACGTC 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 357
CaiI CAGNNNCTG 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 2 cut(s) 4, 368
CviAII CATG 5 cut(s) 27, 32, 124, 232, 372
CviJI RGCY 5 cut(s) 77, 279, 308, 314, 324
CviKI_1 RGCY 5 cut(s) 77, 279, 308, 314, 324
CviQI GTAC 2 cut(s) 4, 368
DdeI CTNAG 2 cut(s) 7, 325
DpnI GATC 2 cut(s) 25, 114
DpnII GATC 2 cut(s) 23, 112
FaeI CATG 5 cut(s) 30, 35, 127, 235, 375
FaiI YATR 9 cut(s) 28, 33, 74, 100, 125, 151, 233, 348, 373
FatI CATG 5 cut(s) 26, 31, 123, 231, 371
FspBI CTAG 1 cut(s) 305
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 5 cut(s) 30, 35, 127, 235, 375
Hpy166II GTNNAC 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 167
HpyCH4IV ACGT 2 cut(s) 54, 169
HpyCH4V TGCA 3 cut(s) 194, 343, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 2 cut(s) 7, 325
HpySE526I ACGT 2 cut(s) 54, 169
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 5 cut(s) 30, 35, 127, 235, 375
KpnI GGTACC 1 cut(s) 371
Kzo9I GATC 2 cut(s) 23, 112
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 5 cut(s) 58, 129, 294, 294, 365
LweI GCATC 1 cut(s) 368
MaeI CTAG 1 cut(s) 305
MaeII ACGT 2 cut(s) 54, 169
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 25, 114
MboI GATC 2 cut(s) 23, 112
MboII GAAGA 4 cut(s) 115, 164, 215, 279
MflI RGATCY 1 cut(s) 112
MluCI AATT 4 cut(s) 16, 79, 133, 284
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 2 cut(s) 30, 208
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 2 cut(s) 23, 112
NlaIII CATG 5 cut(s) 30, 35, 127, 235, 375
NlaIV GGNNCC 1 cut(s) 369
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 235
PciI ACATGT 1 cut(s) 231
PscI ACATGT 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 1 cut(s) 278
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 2 cut(s) 5, 369
RsaNI GTAC 2 cut(s) 4, 368
Sau3AI GATC 2 cut(s) 23, 112
Sau96I GGNCC 1 cut(s) 278
SetI ASST 6 cut(s) 57, 79, 172, 310, 316, 369
SfaNI GCATC 1 cut(s) 368
Sse9I AATT 4 cut(s) 16, 79, 133, 284
SspMI CTAG 1 cut(s) 305
TaiI ACGT 2 cut(s) 57, 172
TasI AATT 4 cut(s) 16, 79, 133, 284
TatI WGTACW 1 cut(s) 3
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 112
XapI RAATTY 3 cut(s) 16, 133, 284
XceI RCATGY 1 cut(s) 235
XspI CTAG 1 cut(s) 305
ZraI GACGTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.