RLG00000005055

Rhomboid family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001329
Physical Location & Seq
Forward (+)
64714481 .. 64718232
3752 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005055

Sequence Viewer

Length: 1056 bp
ATGCAGACGCTTCTTTCTGTGAAATTGGCCTCAAACCTCCCTAAAACCCTCTCAAGCTCCACCACAAGGTCTTCTCTTTTCCACTTTCAGCCTCACAAAACCTTCTCCTTGACCAAACCACCCCAAACCCAAACCCAAAACCTCTTCTTTAGCTCCTTTCCCACACACCCACTTCAGCATCAGAAAGTTCATGGCTTTTTCTCCAACCCATTACTCAGAAAGCACTTTTCTTTGGATTCCACAAATACCCTTCTGAGAGTATCAAGCAAGAGGCTTTCGGATTGCAGGCTTGCCTTTCTCCAAAGAAAAATTCCCAAACAGAACTTTCAGTTCTTCCCAAGTTCTGATGCTCATCTGAGTGCTAGGAGATCATGGTATAGGAGGGTATCCAATAATGACGTGCTTTTGGGATTGATTATAGCTAATTTTGCTGTTTTTCTTTTATGGAAGATAGCAGATCCTGTATTCATGGTCAAGAATTTTACTCTCTCACTATACAGTATCACAAGTGGACGTCTTCACACATTGATAACTTCTGCATTTAGTCACTTGGTTGTTGAGGATATTCTTTTCAACATGTTCCTTCTCTCTGTTTTTGGGAACGATGTTGGAAGAACTTTTGGCCCTGAATTTTTGCTAAAGTTGTATCTAGCCGGAGCTATTGGTGGCTCAGTCTTTTACTTGGTGCAATATGTCCTGCTCGCATCAAAGTATACTCATGATCTGCTGTTTGCAGGACGGAGACCTTTCAAACAGTCCCATATTGACATTGGTATGCTCTCAACAAACCCTTTACATTCTATGGGCGCACAAGGTGCTGTTACTGCTGTGATGTACTTTGACTTGTTACAACTCTGCACATGCATCCCAGCTTTCCTCTACTATCTGAACATATTACTGGTAAGTTTGCTTCTATGTTGTATGGCCTACCGAATTGGGGATTCCATTTCAAGGATCATACAGGGAAACAGTAGCTCAGGAAATGCACATGTGGGCGGCACCGCAGTAGCAACCATTGCCTGGGTACGACTTCGGATGGGGCTTCGGGTATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid

Protein Analysis

352

Amino Acids

39.43

Weight (kDa)

10.15

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 171 - 341 1.1e-11 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 517
AccB1I GGYRCC 1 cut(s) 998
AccB7I CCANNNNNTGG 1 cut(s) 1020
AccI GTMKAC 1 cut(s) 713
AciI CCGC 2 cut(s) 996, 1002
AclWI GGATC 2 cut(s) 452, 962
AcsI RAATTY 3 cut(s) 309, 478, 629
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 514
AdeI CACNNNGTG 1 cut(s) 815
AfaI GTAC 2 cut(s) 836, 1026
AfiI CCNNNNNNNGG 4 cut(s) 66, 937, 951, 1020
AflIII ACRYGT 2 cut(s) 576, 988
AgsI TTSAA 3 cut(s) 574, 751, 951
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 1 cut(s) 1019
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 6 cut(s) 57, 153, 422, 659, 872, 975
AluI AGCT 6 cut(s) 57, 153, 422, 659, 872, 975
Alw26I GTCTC 1 cut(s) 736
AlwI GGATC 2 cut(s) 452, 962
AlwNI CAGNNNCTG 1 cut(s) 461
AoxI GGCC 3 cut(s) 27, 622, 924
ApoI RAATTY 3 cut(s) 309, 478, 629
AspLEI GCGC 1 cut(s) 809
AspS9I GGNCC 1 cut(s) 623
BanI GGYRCC 1 cut(s) 998
BarI GAAGNNNNNNTAC 2 cut(s) 894, 926
BbsI GAAGAC 2 cut(s) 63, 509
BccI CCATC 1 cut(s) 1030
BciT130I CCWGG 1 cut(s) 1021
BciVI GTATCC 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 736
BfaI CTAG 2 cut(s) 363, 650
BfuI GTATCC 1 cut(s) 397
BisI GCNGC 1 cut(s) 997
BlsI GCNGC 1 cut(s) 998
Bme1390I CCNGG 1 cut(s) 1021
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 623
BmiI GGNNCC 1 cut(s) 1000
BmrFI CCNGG 1 cut(s) 1021
BmsI GCATC 4 cut(s) 187, 337, 713, 873
BpiI GAAGAC 2 cut(s) 63, 509
Bpu10I CCTNAGC 1 cut(s) 976
BpuEI CTTGAG 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 514
BsaI GGTCTC 1 cut(s) 736
BsaJI CCNNGG 1 cut(s) 1020
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 937, 951, 1020
Bse1I ACTGG 1 cut(s) 903
Bse3DI GCAATG 1 cut(s) 1014
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 1021
BseDI CCNNGG 1 cut(s) 1020
BseGI GGATG 2 cut(s) 864, 1041
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 4 cut(s) 66, 937, 951, 1020
BseMI GCAATG 1 cut(s) 1014
BseMII CTCAG 5 cut(s) 229, 245, 347, 684, 990
BseNI ACTGG 1 cut(s) 903
BseYI CCCAGC 1 cut(s) 868
BsgI GTGCAG 1 cut(s) 841
BshFI GGCC 3 cut(s) 29, 624, 926
BshNI GGYRCC 1 cut(s) 998
BsiSI CCGG 1 cut(s) 654
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 4 cut(s) 66, 937, 951, 1020
BsmAI GTCTC 1 cut(s) 736
BsmFI GGGAC 1 cut(s) 742
BsnI GGCC 3 cut(s) 29, 624, 926
Bso31I GGTCTC 1 cut(s) 736
Bsp143I GATC 4 cut(s) 368, 457, 721, 954
BspACI CCGC 2 cut(s) 996, 1002
BspANI GGCC 3 cut(s) 29, 624, 926
BspCNI CTCAG 5 cut(s) 228, 246, 348, 683, 989
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 1 cut(s) 1000
BspPI GGATC 2 cut(s) 452, 962
BspT107I GGYRCC 1 cut(s) 998
BspTNI GGTCTC 1 cut(s) 736
BsrDI GCAATG 1 cut(s) 1014
BsrI ACTGG 1 cut(s) 903
BssECI CCNNGG 1 cut(s) 1020
BssMI GATC 4 cut(s) 368, 457, 721, 954
BssNAI GTATAC 1 cut(s) 714
BssNI GRCGYC 1 cut(s) 514
Bst1107I GTATAC 1 cut(s) 714
Bst2UI CCWGG 1 cut(s) 1021
Bst4CI ACNGT 3 cut(s) 500, 756, 971
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 514
BstAPI GCANNNNNTGC 2 cut(s) 815, 1016
BstC8I GCNNGC 3 cut(s) 287, 291, 702
BstDEI CTNAG 5 cut(s) 215, 254, 356, 670, 976
BstF5I GGATG 2 cut(s) 864, 1041
BstHHI GCGC 1 cut(s) 809
BstKTI GATC 4 cut(s) 371, 460, 724, 957
BstMAI GTCTC 1 cut(s) 736
BstMBI GATC 4 cut(s) 368, 457, 721, 954
BstMWI GCNNNNNNNGC 4 cut(s) 428, 815, 824, 1016
BstNI CCWGG 1 cut(s) 1021
BstNSI RCATGY 3 cut(s) 580, 864, 992
BstSCI CCNGG 1 cut(s) 1019
BstV2I GAAGAC 2 cut(s) 63, 509
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BstZ17I GTATAC 1 cut(s) 714
BsuI GTATCC 1 cut(s) 397
BsuRI GGCC 3 cut(s) 29, 624, 926
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 2 cut(s) 864, 1041
Cac8I GCNNGC 3 cut(s) 287, 291, 702
CaiI CAGNNNCTG 1 cut(s) 461
CciI TCATGA 1 cut(s) 718
CfoI GCGC 1 cut(s) 809
Cfr13I GGNCC 1 cut(s) 623
CseI GACGC 1 cut(s) 16
Csp6I GTAC 2 cut(s) 835, 1025
CviAII CATG 7 cut(s) 191, 372, 469, 577, 719, 861, 989
CviQI GTAC 2 cut(s) 835, 1025
DdeI CTNAG 5 cut(s) 215, 254, 356, 670, 976
DpnI GATC 4 cut(s) 370, 459, 723, 956
DpnII GATC 4 cut(s) 368, 457, 721, 954
DraIII CACNNNGTG 1 cut(s) 815
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 736
Eco57I CTGAAG 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 1019
EcoT22I ATGCAT 1 cut(s) 866
FaeI CATG 7 cut(s) 194, 375, 472, 580, 722, 864, 992
FaqI GGGAC 1 cut(s) 742
FatI CATG 7 cut(s) 190, 371, 468, 576, 718, 860, 988
FblI GTMKAC 1 cut(s) 713
Fnu4HI GCNGC 1 cut(s) 997
FokI GGATG 2 cut(s) 851, 1048
Fsp4HI GCNGC 1 cut(s) 997
FspBI CTAG 2 cut(s) 363, 650
GlaI GCGC 1 cut(s) 808
GluI GCNGC 1 cut(s) 997
GsaI CCCAGC 1 cut(s) 872
HaeIII GGCC 3 cut(s) 29, 624, 926
HapII CCGG 1 cut(s) 654
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 809
Hin1I GRCGYC 1 cut(s) 514
Hin1II CATG 7 cut(s) 194, 375, 472, 580, 722, 864, 992
Hin6I GCGC 1 cut(s) 807
HinP1I GCGC 1 cut(s) 807
HinfI GANTC 2 cut(s) 236, 941
HpaII CCGG 1 cut(s) 654
Hpy166II GTNNAC 2 cut(s) 512, 714
Hpy188I TCNGA 8 cut(s) 183, 218, 255, 280, 346, 357, 888, 1035
Hpy188III TCNNGA 3 cut(s) 475, 719, 978
Hpy8I GTNNAC 2 cut(s) 512, 714
HpyAV CCTTC 3 cut(s) 112, 260, 593
HpyCH4III ACNGT 3 cut(s) 500, 756, 971
HpyCH4IV ACGT 2 cut(s) 399, 514
HpyCH4V TGCA 8 cut(s) 4, 285, 539, 688, 734, 858, 864, 986
HpyF10VI GCNNNNNNNGC 4 cut(s) 428, 815, 824, 1016
HpyF3I CTNAG 5 cut(s) 215, 254, 356, 670, 976
HpySE526I ACGT 2 cut(s) 399, 514
Hsp92I GRCGYC 1 cut(s) 514
Hsp92II CATG 7 cut(s) 194, 375, 472, 580, 722, 864, 992
HspAI GCGC 1 cut(s) 807
Kzo9I GATC 4 cut(s) 368, 457, 721, 954
LmnI GCTCC 3 cut(s) 62, 158, 656
LweI GCATC 4 cut(s) 187, 337, 713, 873
MaeI CTAG 2 cut(s) 363, 650
MaeII ACGT 2 cut(s) 399, 514
MaeIII GTNAC 3 cut(s) 545, 820, 846
MalI GATC 4 cut(s) 370, 459, 723, 956
MboI GATC 4 cut(s) 368, 457, 721, 954
MboII GAAGA 6 cut(s) 63, 136, 325, 460, 509, 624
MflI RGATCY 1 cut(s) 457
MluCI AATT 6 cut(s) 23, 309, 424, 478, 629, 933
MmeI TCCRAC 2 cut(s) 228, 589
MnlI CCTC 9 cut(s) 40, 47, 59, 102, 152, 264, 375, 553, 887
Mph1103I ATGCAT 1 cut(s) 866
MslI CAYNNNNRTG 2 cut(s) 357, 773
MspI CCGG 1 cut(s) 654
MspR9I CCNGG 1 cut(s) 1021
MvaI CCWGG 1 cut(s) 1021
MwoI GCNNNNNNNGC 4 cut(s) 428, 815, 824, 1016
NdeII GATC 4 cut(s) 368, 457, 721, 954
NlaIII CATG 7 cut(s) 194, 375, 472, 580, 722, 864, 992
NlaIV GGNNCC 1 cut(s) 1000
NmuCI GTSAC 1 cut(s) 545
NsiI ATGCAT 1 cut(s) 866
NspI RCATGY 3 cut(s) 580, 864, 992
PagI TCATGA 1 cut(s) 718
PciI ACATGT 2 cut(s) 576, 988
PfeI GAWTC 2 cut(s) 236, 941
PflMI CCANNNNNTGG 1 cut(s) 1020
PkrI GCNGC 1 cut(s) 998
PscI ACATGT 2 cut(s) 576, 988
Psp6I CCWGG 1 cut(s) 1019
PspFI CCCAGC 1 cut(s) 868
PspGI CCWGG 1 cut(s) 1019
PspN4I GGNNCC 1 cut(s) 1000
PspPI GGNCC 1 cut(s) 623
PstNI CAGNNNCTG 1 cut(s) 461
PsuI RGATCY 1 cut(s) 457
RsaI GTAC 2 cut(s) 836, 1026
RsaNI GTAC 2 cut(s) 835, 1025
RseI CAYNNNNRTG 2 cut(s) 357, 773
SatI GCNGC 1 cut(s) 997
Sau3AI GATC 4 cut(s) 368, 457, 721, 954
Sau96I GGNCC 1 cut(s) 623
ScrFI CCNGG 1 cut(s) 1021
SfaNI GCATC 4 cut(s) 187, 337, 713, 873
SmiMI CAYNNNNRTG 2 cut(s) 357, 773
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 6 cut(s) 23, 309, 424, 478, 629, 933
SsiI CCGC 2 cut(s) 996, 1002
SspMI CTAG 2 cut(s) 363, 650
StyD4I CCNGG 1 cut(s) 1019
TaaI ACNGT 3 cut(s) 500, 756, 971
TaiI ACGT 2 cut(s) 402, 517
TasI AATT 6 cut(s) 23, 309, 424, 478, 629, 933
TatI WGTACW 1 cut(s) 834
TauI GCSGC 1 cut(s) 999
TfiI GAWTC 2 cut(s) 236, 941
TseFI GTSAC 1 cut(s) 545
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 2 cut(s) 179, 457
TspGWI ACGGA 1 cut(s) 754
Van91I CCANNNNNTGG 1 cut(s) 1020
XapI RAATTY 3 cut(s) 309, 478, 629
XceI RCATGY 3 cut(s) 580, 864, 992
XcmI CCANNNNNNNNNTGG 1 cut(s) 767
XmiI GTMKAC 1 cut(s) 713
XspI CTAG 2 cut(s) 363, 650
ZraI GACGTC 1 cut(s) 515
Zsp2I ATGCAT 1 cut(s) 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.