Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Forward (+)

4306812 .. 4308563

Gene Structure 1752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG059900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTTGGAGAGAAAGCCATGAACCTTCTGAGTGAGAAGAAGTGGGTGTGTGGGGAAAGAGCTGAGGAAGTGATTTTGGGTTTGGGGCGGTTTGGTAGAGAGAAGGGCGCAAGCGGTGCTGTTACTGCTACCATTTTGCTTGATATATTCCTCCGCCCCACAGCTACCCTCTACTTTATCATACCGTTTCCTGCCATGCTGCTGGGGATGTTTCTACTTGGGCAGGATTTCTTAAGGGTGAATTCGGGAAACAGTACTATCTCAGGATCTGCACACTTGGGTGGCGCCACAGTTGCAGCCATAGTCTCATTAGTCTGGGCACGACTTCAGAAGGGGCGTCGTTTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

116

Amino Acids

12.46

Weight (kDa)

10.0

Isoelectric Point (pI)

26.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	36 - 105	2e-06	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AciI	CCGC	3 cut(s)	88, 114, 154
AclWI	GGATC	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	2 cut(s)	285, 337
AfaI	GTAC	1 cut(s)	256
AflII	CTTAAG	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	279
AluBI	AGCT	2 cut(s)	62, 164
AluI	AGCT	2 cut(s)	62, 164
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	274
AlwNI	CAGNNNCTG	1 cut(s)	269
ApeKI	GCWGC	2 cut(s)	199, 296
ApoI	RAATTY	1 cut(s)	241
AspLEI	GCGC	2 cut(s)	110, 287
AsuHPI	GGTGA	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	284
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	186, 308
BcoDI	GTCTC	1 cut(s)	310
BfoI	RGCGCY	1 cut(s)	288
BfrI	CTTAAG	1 cut(s)	232
BisI	GCNGC	2 cut(s)	200, 297
BlsI	GCNGC	2 cut(s)	201, 298
BmcAI	AGTACT	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	286
Bpu10I	CCTNAGC	1 cut(s)	63
BsaHI	GRCGYC	2 cut(s)	285, 337
BseGI	GGATG	1 cut(s)	213
BseMII	CTCAG	3 cut(s)	20, 54, 276
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	2 cut(s)	186, 308
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	266
BspACI	CCGC	3 cut(s)	88, 114, 154
BspCNI	CTCAG	3 cut(s)	21, 55, 275
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	284
BspTI	CTTAAG	1 cut(s)	232
BssMI	GATC	1 cut(s)	266
BssNI	GRCGYC	2 cut(s)	285, 337
Bst4CI	ACNGT	3 cut(s)	186, 254, 292
BstACI	GRCGYC	2 cut(s)	285, 337
BstAFI	CTTAAG	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	29, 63, 262
BstF5I	GGATG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	110, 287
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 125, 293
BstSLI	GKGCMC	1 cut(s)	322
BstV1I	GCAGC	2 cut(s)	186, 308
BstX2I	RGATCY	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	112
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	2 cut(s)	110, 287
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	2 cut(s)	19, 196
CviJI	RGCY	4 cut(s)	17, 62, 164, 299
CviKI_1	RGCY	4 cut(s)	17, 62, 164, 299
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	3 cut(s)	29, 63, 262
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	311
EcoRI	GAATTC	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
FaeI	CATG	2 cut(s)	22, 199
FaiI	YATR	5 cut(s)	20, 146, 182, 197, 302
FatI	CATG	2 cut(s)	18, 195
Fnu4HI	GCNGC	2 cut(s)	200, 297
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	2 cut(s)	200, 297
GlaI	GCGC	2 cut(s)	109, 286
GluI	GCNGC	2 cut(s)	200, 297
GsaI	CCCAGC	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	288
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	2 cut(s)	110, 287
Hin1I	GRCGYC	2 cut(s)	285, 337
Hin1II	CATG	2 cut(s)	22, 199
Hin6I	GCGC	2 cut(s)	108, 285
HinP1I	GCGC	2 cut(s)	108, 285
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	30, 330
Hpy188III	TCNNGA	2 cut(s)	246, 264
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	3 cut(s)	35, 97, 325
HpyCH4III	ACNGT	3 cut(s)	186, 254, 292
HpyCH4V	TGCA	2 cut(s)	272, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 125, 293
HpyF3I	CTNAG	3 cut(s)	29, 63, 262
Hsp92I	GRCGYC	2 cut(s)	285, 337
Hsp92II	CATG	2 cut(s)	22, 199
HspAI	GCGC	2 cut(s)	108, 285
KasI	GGCGCC	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	266
LpnPI	CCDG	5 cut(s)	188, 204, 209, 249, 301
Lsp1109I	GCAGC	2 cut(s)	186, 308
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	1 cut(s)	49
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	1 cut(s)	241
Mly113I	GGCGCC	1 cut(s)	285
MnlI	CCTC	3 cut(s)	58, 161, 179
MseI	TTAA	2 cut(s)	233, 349
MslI	CAYNNNNRTG	1 cut(s)	279
MspCI	CTTAAG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	116, 125, 293
NarI	GGCGCC	1 cut(s)	285
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	22, 199
NlaIV	GGNNCC	1 cut(s)	286
OliI	CACNNNNGTG	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	201, 298
PluTI	GGCGCC	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	233, 349
SatI	GCNGC	2 cut(s)	200, 297
Sau3AI	GATC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	3 cut(s)	27, 64, 166
SfoI	GGCGCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	3 cut(s)	88, 114, 154
SspDI	GGCGCC	1 cut(s)	284
TaaI	ACNGT	3 cut(s)	186, 254, 292
TasI	AATT	1 cut(s)	241
TatI	WGTACW	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	233, 349
Tru9I	TTAA	2 cut(s)	233, 349
TseI	GCWGC	2 cut(s)	199, 296
TspDTI	ATGAA	1 cut(s)	35
Vha464I	CTTAAG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	241
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.