Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Forward (+)

63132354 .. 63136497

Gene Structure 4144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTCAAGAATTTTACTCTCTCACTATACAATATCACAAGTGGACGTCTTCACACATTGATAACTTCTGCATTTAGTCACTTGGTTGTTGAGGATATTCTTTTCAACATGTTCGTACTCTCTGTTTTTGGGAACGATGTTGGAAAAACTTTTGGCCCTGAATTTTTGCTAAAGTTGTATCTAGCCGGAGCTATTGGTGGTTCAGTCTTTTACTTGGTGCAATATGTCCTACTCGCATCAAAGGACGGAGACCTTTCCAACAGTCCCATATTGACATTGGGCTCACAAGGTGCTGTTACTGCTGTGATGTACTTTGACTTGTTACAACTCTGCACACGCATCCCAGCTTTCCTCTACTATCTGAACATATTACTGATGGCCTATCGAATTGGGGATTCCATTTCAAGGATCATACAGGGAAACAGTAGCTCAGGAAATGCACATGTGGGTGGCGCCGCAGTAGCAACCATTGCCTGGGTACGACTTCAGATGGGGCTTCCGGTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

169

Amino Acids

18.32

Weight (kDa)

7.87

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	15 - 159	1.4e-15	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	452
AccB7I	CCANNNNNTGG	1 cut(s)	474
AciI	CCGC	1 cut(s)	456
AclWI	GGATC	1 cut(s)	416
AcsI	RAATTY	2 cut(s)	10, 161
AcuI	CTGAAG	1 cut(s)	470
AcyI	GRCGYC	2 cut(s)	46, 453
AdeI	CACNNNGTG	1 cut(s)	290
AfaI	GTAC	3 cut(s)	117, 311, 480
AfiI	CCNNNNNNNGG	2 cut(s)	405, 474
AflIII	ACRYGT	2 cut(s)	108, 442
AgsI	TTSAA	2 cut(s)	106, 405
AjnI	CCWGG	1 cut(s)	473
AluBI	AGCT	3 cut(s)	191, 347, 429
AluI	AGCT	3 cut(s)	191, 347, 429
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	416
AoxI	GGCC	2 cut(s)	154, 378
ApoI	RAATTY	2 cut(s)	10, 161
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	41
BccI	CCATC	2 cut(s)	370, 484
BciT130I	CCWGG	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	456
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	475
BmsI	GCATC	2 cut(s)	245, 348
BpiI	GAAGAC	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	430
BsaHI	GRCGYC	2 cut(s)	46, 453
BsaI	GGTCTC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	474
BsaWI	WCCGGW	1 cut(s)	499
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 474
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	475
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	2 cut(s)	405, 474
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	444
BseYI	CCCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	316
BshFI	GGCC	2 cut(s)	156, 380
BshNI	GGYRCC	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	186, 500
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	405, 474
BsmAI	GTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	156, 380
Bso31I	GGTCTC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	408
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	2 cut(s)	156, 380
BspCNI	CTCAG	1 cut(s)	443
BspLI	GGNNCC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	1 cut(s)	408
BssNI	GRCGYC	2 cut(s)	46, 453
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	2 cut(s)	263, 425
BstACI	GRCGYC	2 cut(s)	46, 453
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstDEI	CTNAG	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 461, 470
BstNI	CCWGG	1 cut(s)	475
BstNSI	RCATGY	2 cut(s)	112, 446
BstSCI	CCNGG	1 cut(s)	473
BstV2I	GAAGAC	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	156, 380
BtsCI	GGATG	1 cut(s)	339
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	3 cut(s)	116, 310, 479
CviAII	CATG	2 cut(s)	109, 443
CviJI	RGCY	8 cut(s)	156, 185, 191, 282, 347, 380, 429, 496
CviKI_1	RGCY	8 cut(s)	156, 185, 191, 282, 347, 380, 429, 496
CviQI	GTAC	3 cut(s)	116, 310, 479
DdeI	CTNAG	1 cut(s)	430
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
DraIII	CACNNNGTG	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	473
EcoT38I	GRGCYC	1 cut(s)	284
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
FaeI	CATG	2 cut(s)	112, 446
FaiI	YATR	7 cut(s)	28, 110, 225, 269, 368, 413, 444
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	2 cut(s)	108, 442
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	1 cut(s)	456
GsaI	CCCAGC	1 cut(s)	347
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	156, 380
HapII	CCGG	2 cut(s)	186, 500
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	2 cut(s)	46, 453
Hin1II	CATG	2 cut(s)	112, 446
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	2 cut(s)	186, 500
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	363, 489
Hpy188III	TCNNGA	2 cut(s)	7, 432
Hpy8I	GTNNAC	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	263, 425
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	4 cut(s)	71, 220, 333, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 461, 470
HpyF3I	CTNAG	1 cut(s)	430
HpySE526I	ACGT	1 cut(s)	46
Hsp92I	GRCGYC	2 cut(s)	46, 453
Hsp92II	CATG	2 cut(s)	112, 446
HspAI	GCGC	1 cut(s)	453
KasI	GGCGCC	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	7 cut(s)	171, 199, 357, 401, 417, 460, 487
LweI	GCATC	2 cut(s)	245, 348
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	46
MaeIII	GTNAC	3 cut(s)	77, 295, 321
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	3 cut(s)	10, 161, 387
Mly113I	GGCGCC	1 cut(s)	453
MmeI	TCCRAC	2 cut(s)	121, 282
MnlI	CCTC	2 cut(s)	85, 362
MslI	CAYNNNNRTG	1 cut(s)	447
MspI	CCGG	2 cut(s)	186, 500
MspR9I	CCNGG	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	475
MwoI	GCNNNNNNNGC	3 cut(s)	299, 461, 470
NarI	GGCGCC	1 cut(s)	453
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	2 cut(s)	112, 446
NlaIV	GGNNCC	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	2 cut(s)	112, 446
PciI	ACATGT	2 cut(s)	108, 442
PfeI	GAWTC	1 cut(s)	395
PflMI	CCANNNNNTGG	1 cut(s)	474
PkrI	GCNGC	1 cut(s)	457
PluTI	GGCGCC	1 cut(s)	456
PscI	ACATGT	2 cut(s)	108, 442
Psp6I	CCWGG	1 cut(s)	473
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	155
RsaI	GTAC	3 cut(s)	117, 311, 480
RsaNI	GTAC	3 cut(s)	116, 310, 479
RseI	CAYNNNNRTG	1 cut(s)	447
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	475
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	6 cut(s)	49, 193, 255, 292, 349, 431
SfaNI	GCATC	2 cut(s)	245, 348
SfoI	GGCGCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	447
Sse9I	AATT	3 cut(s)	10, 161, 387
SsiI	CCGC	1 cut(s)	456
SspDI	GGCGCC	1 cut(s)	452
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	263, 425
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	385
TasI	AATT	3 cut(s)	10, 161, 387
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
TspGWI	ACGGA	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	474
XapI	RAATTY	2 cut(s)	10, 161
XceI	RCATGY	2 cut(s)	112, 446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	1 cut(s)	182
ZraI	GACGTC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.