Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Reverse (-)

58408027 .. 58409438

Gene Structure 1412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0456500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGACCACCACCGTCACCGGAAGCCGTGAATCTCCGGATGAGAGACGCAATATTTCCACCGTAGTTTACCAAGACCATATAAACCGATCCTTCACAAGCAGCGCCGGCGTGGACGTACTTCCGATCAGATTCCGGCTCTTTAAGGTAACTGCTAACTATAATCCGATTCTCCACGATTATGATCTCGAAACTCCAATTCCCATATCTACACATGTATATTTGCTGCGGTTCTCGGCGGAGTGGCGGAGCTGGAATTCAAAGATAACGATGGAGAGGTTGGCTAGGTATCAAAGGACGATTGCTAAGTGTGGTTGGCAGATGGATAAGTTAGTAGACAAGCTGGCAAGGTATCTTTCTGATACCGTGGGTGTTGAAGAGGATCAGCACCCTTGTATTATTCTGAAAACGGTGGAGATGATTCAAGCCGCCGTCCACGACCGGGTTATCGATGTGCAGATGTCGGACATCACATTTATCGAACCGGAACCTGAACCGGAGGAGGAATCTGAGCTGGAGGAGGAGTCTGAACCGGAGGAGGAGTCGGAACAAGAGGAGGAGTCTGAAACGGAGGAGGATTCTGAACAGGAGGGATTCGAGGATTTGGACGACACATCGTACGGGGACAATCTGACTCCTGCATCTGAATCATTCATGGAGGATTTGAAGAAATTGAGAGTACTTGGTTCGGAATTGGAAATGCTTGGGCAGACGCCAAACTGTGCTATTTGTCTGGAGGTGCTTGCTGAAGAAGGATATGATGATCAACTGATCACCATTACTCGCTTGCCTTGCTTACACTATTATCATCGGGATTGCATTATCAAGTGGATGATGATCAATAATTTATGCCCAGTTTGTCGACGCCAGAATGTGGAAGCAGGGGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

296

Amino Acids

34.24

Weight (kDa)

4.4

Isoelectric Point (pI)

62.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	239 - 287	3.9e-11	Ring finger domain
zf-rbx1	PF12678	239 - 287	1.4e-06	RING-H2 zinc finger domain
zf-C3HC4	PF00097	240 - 286	1.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	240 - 286	6.1e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	871
AccI	GTMKAC	2 cut(s)	333, 859
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	4 cut(s)	226, 236, 244, 426
AclWI	GGATC	2 cut(s)	81, 387
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	765
AcyI	GRCGYC	2 cut(s)	710, 862
AfaI	GTAC	3 cut(s)	117, 617, 678
AfiI	CCNNNNNNNGG	2 cut(s)	439, 871
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	4 cut(s)	258, 374, 422, 664
AluBI	AGCT	3 cut(s)	249, 340, 511
AluI	AGCT	3 cut(s)	249, 340, 511
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	81, 387
Aor13HI	TCCGGA	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	99, 223
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	7, 763
BbvI	GCAGC	2 cut(s)	111, 210
BccI	CCATC	2 cut(s)	262, 313
BceAI	ACGGC	2 cut(s)	9, 413
BclI	TGATCA	3 cut(s)	760, 768, 834
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	282
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	3 cut(s)	100, 224, 426
BlsI	GCNGC	3 cut(s)	101, 225, 427
BmcAI	AGTACT	1 cut(s)	678
Bme1390I	CCNGG	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	440
BmrI	ACTGGG	1 cut(s)	845
BmsI	GCATC	1 cut(s)	647
BmuI	ACTGGG	1 cut(s)	845
BpmI	CTGGAG	2 cut(s)	533, 752
BpuMI	CCSGG	1 cut(s)	440
Bsa29I	ATCGAT	1 cut(s)	447
BsaBI	GATNNNNATC	2 cut(s)	180, 833
BsaHI	GRCGYC	2 cut(s)	710, 862
BsaJI	CCNNGG	1 cut(s)	363
BsaWI	WCCGGW	5 cut(s)	17, 34, 481, 493, 529
BsaXI	ACNNNNNCTCC	4 cut(s)	506, 524, 536, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 871
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	851
Bse8I	GATNNNNATC	2 cut(s)	180, 833
BseAI	TCCGGA	1 cut(s)	34
BseCI	ATCGAT	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	43, 834
BseJI	GATNNNNATC	2 cut(s)	180, 833
BseLI	CCNNNNNNNGG	2 cut(s)	439, 871
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	851
BseRI	GAGGAG	8 cut(s)	512, 530, 533, 548, 551, 566, 569, 584
BseXI	GCAGC	2 cut(s)	111, 210
BsgI	GTGCAG	1 cut(s)	473
Bsh1285I	CGRYCG	1 cut(s)	439
BshVI	ATCGAT	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	439
BsiSI	CCGG	8 cut(s)	18, 35, 105, 133, 439, 482, 494, 530
BsiWI	CGTACG	1 cut(s)	615
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	2 cut(s)	439, 871
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	635
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	7 cut(s)	86, 123, 181, 379, 760, 768, 834
BspACI	CCGC	4 cut(s)	226, 236, 244, 426
BspCNI	CTCAG	1 cut(s)	499
BspDI	ATCGAT	1 cut(s)	447
BspEI	TCCGGA	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	81, 387
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	851
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	7 cut(s)	86, 123, 181, 379, 760, 768, 834
BssNI	GRCGYC	2 cut(s)	710, 862
Bst4CI	ACNGT	5 cut(s)	13, 61, 364, 409, 719
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	2 cut(s)	710, 862
BstC8I	GCNNGC	4 cut(s)	106, 342, 741, 785
BstDEI	CTNAG	2 cut(s)	303, 507
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	43, 834
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	7 cut(s)	89, 126, 184, 382, 763, 771, 837
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	7 cut(s)	86, 123, 181, 379, 760, 768, 834
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 789
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	111, 210
Bsu15I	ATCGAT	1 cut(s)	447
BsuTUI	ATCGAT	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	43, 834
Cac8I	GCNNGC	4 cut(s)	106, 342, 741, 785
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	447
CseI	GACGC	3 cut(s)	54, 718, 870
Csp6I	GTAC	3 cut(s)	116, 616, 677
CviAII	CATG	2 cut(s)	212, 652
CviJI	RGCY	7 cut(s)	24, 136, 249, 281, 340, 425, 511
CviKI_1	RGCY	7 cut(s)	24, 136, 249, 281, 340, 425, 511
CviQI	GTAC	3 cut(s)	116, 616, 677
DdeI	CTNAG	2 cut(s)	303, 507
DpnI	GATC	7 cut(s)	88, 125, 183, 381, 762, 770, 836
DpnII	GATC	7 cut(s)	86, 123, 181, 379, 760, 768, 834
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	2 cut(s)	251, 259
Eco57I	CTGAAG	1 cut(s)	765
EcoRI	GAATTC	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	2 cut(s)	215, 655
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	2 cut(s)	211, 651
FbaI	TGATCA	3 cut(s)	760, 768, 834
FblI	GTMKAC	2 cut(s)	333, 859
Fnu4HI	GCNGC	3 cut(s)	100, 224, 426
FokI	GGATG	2 cut(s)	50, 841
Fsp4HI	GCNGC	3 cut(s)	100, 224, 426
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	3 cut(s)	100, 224, 426
GsuI	CTGGAG	2 cut(s)	533, 752
HaeII	RGCGCY	1 cut(s)	105
HapII	CCGG	8 cut(s)	18, 35, 105, 133, 439, 482, 494, 530
HgaI	GACGC	3 cut(s)	54, 718, 870
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	2 cut(s)	710, 862
Hin1II	CATG	2 cut(s)	215, 655
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	860
HindII	GTYRAC	1 cut(s)	860
HpaII	CCGG	8 cut(s)	18, 35, 105, 133, 439, 482, 494, 530
HphI	GGTGA	2 cut(s)	7, 763
Hpy166II	GTNNAC	5 cut(s)	67, 112, 334, 433, 860
Hpy188III	TCNNGA	4 cut(s)	35, 185, 731, 809
Hpy8I	GTNNAC	5 cut(s)	67, 112, 334, 433, 860
Hpy99I	CGWCG	1 cut(s)	864
HpyAV	CCTTC	2 cut(s)	100, 743
HpyCH4III	ACNGT	5 cut(s)	13, 61, 364, 409, 719
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	454, 638, 816
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 789
HpyF3I	CTNAG	2 cut(s)	303, 507
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	2 cut(s)	710, 862
Hsp92II	CATG	2 cut(s)	215, 655
HspAI	GCGC	1 cut(s)	102
Kpn2I	TCCGGA	1 cut(s)	34
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	3 cut(s)	760, 768, 834
Kzo9I	GATC	7 cut(s)	86, 123, 181, 379, 760, 768, 834
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	2 cut(s)	111, 210
LweI	GCATC	1 cut(s)	647
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	13, 145
MalI	GATC	7 cut(s)	88, 125, 183, 381, 762, 770, 836
MboI	GATC	7 cut(s)	86, 123, 181, 379, 760, 768, 834
MboII	GAAGA	3 cut(s)	386, 676, 758
MluCI	AATT	5 cut(s)	195, 253, 668, 689, 841
MlyI	GAGTC	4 cut(s)	530, 548, 566, 625
MmeI	TCCRAC	2 cut(s)	441, 522
MreI	CGCCGGCG	1 cut(s)	104
MroI	TCCGGA	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	8 cut(s)	18, 35, 105, 133, 439, 482, 494, 530
MspR9I	CCNGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	105, 789
NaeI	GCCGGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	7 cut(s)	86, 123, 181, 379, 760, 768, 834
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	2 cut(s)	215, 655
NlaIV	GGNNCC	1 cut(s)	486
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	13
NspI	RCATGY	1 cut(s)	215
PciI	ACATGT	1 cut(s)	211
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	8 cut(s)	29, 129, 166, 418, 503, 575, 591, 644
Pfl23II	CGTACG	1 cut(s)	615
PflMI	CCANNNNNTGG	1 cut(s)	871
PkrI	GCNGC	3 cut(s)	101, 225, 427
PleI	GAGTC	4 cut(s)	529, 547, 565, 625
PpsI	GAGTC	4 cut(s)	529, 547, 565, 625
PscI	ACATGT	1 cut(s)	211
PspLI	CGTACG	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	486
RsaI	GTAC	3 cut(s)	117, 617, 678
RsaNI	GTAC	3 cut(s)	116, 616, 677
RseI	CAYNNNNRTG	1 cut(s)	177
SalI	GTCGAC	1 cut(s)	858
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	3 cut(s)	100, 224, 426
Sau3AI	GATC	7 cut(s)	86, 123, 181, 379, 760, 768, 834
ScaI	AGTACT	1 cut(s)	678
SchI	GAGTC	4 cut(s)	530, 548, 566, 625
ScrFI	CCNGG	1 cut(s)	440
SfaNI	GCATC	1 cut(s)	647
SgrAI	CRCCGGYG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	5 cut(s)	195, 253, 668, 689, 841
SsiI	CCGC	4 cut(s)	226, 236, 244, 426
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	5 cut(s)	13, 61, 364, 409, 719
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	5 cut(s)	186, 447, 477, 594, 859
TasI	AATT	5 cut(s)	195, 253, 668, 689, 841
TatI	WGTACW	1 cut(s)	676
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	8 cut(s)	29, 129, 166, 418, 503, 575, 591, 644
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	99, 223
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	640
TspGWI	ACGGA	1 cut(s)	581
Van91I	CCANNNNNTGG	1 cut(s)	871
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	215
XmiI	GTMKAC	2 cut(s)	333, 859
XspI	CTAG	1 cut(s)	282
ZrmI	AGTACT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.