Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Reverse (-)

34253464 .. 34256025

Gene Structure 2562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGTTGTTCAGTTGCAAGACTTACTGCATATGACTATAGGAGAACATGGTTGCGAAGGATAGCAGACCCTATATTCATGTACAAGAATTTTACTAATCAACCATTTGGGATTATGGACGCTTCTAAGGCCCCAGGATTGGGGGCAAGCGGTGCTGTTAATGCCATCATGTTGCTTGATATATTCCTTCACTCCACAGCTACCCTCTACTTTGATTTTATCATACCAGTTCCTGCCATGCTGCTGGGAATCTTTCTAATTGGAAAGGATATCTTAAGAATAATGGAGGGAAACAGTCAGATCTCCAGATCTGCACACTTGGGTGGTGCGGCAGCAGCAGCCATAGCCTGGGCAAGACTTCGAAAGGGGCGTGGTTTATTCTATATGAGTCTGGAGATTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

134

Amino Acids

14.78

Weight (kDa)

9.91

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	41 - 118	4.2e-09	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	348
AciI	CCGC	2 cut(s)	150, 329
AcsI	RAATTY	1 cut(s)	88
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	3 cut(s)	139, 140, 348
AflII	CTTAAG	1 cut(s)	274
AjnI	CCWGG	2 cut(s)	133, 347
AleI	CACNNNNGTG	1 cut(s)	321
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	4 cut(s)	241, 332, 335, 338
ApoI	RAATTY	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	130
AsuII	TTCGAA	1 cut(s)	361
BbvI	GCAGC	4 cut(s)	228, 344, 347, 350
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	135, 349
BfmI	CTRYAG	1 cut(s)	37
BfrI	CTTAAG	1 cut(s)	274
BglII	AGATCT	2 cut(s)	300, 308
BisI	GCNGC	5 cut(s)	242, 330, 333, 336, 339
BlsI	GCNGC	5 cut(s)	243, 331, 334, 337, 340
Bme1390I	CCNGG	2 cut(s)	135, 349
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	135, 349
BpmI	CTGGAG	1 cut(s)	289
Bpu14I	TTCGAA	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	133, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 140, 348
Bse1I	ACTGG	1 cut(s)	227
BseBI	CCWGG	2 cut(s)	135, 349
BseDI	CCNNGG	2 cut(s)	133, 348
BseLI	CCNNNNNNNGG	3 cut(s)	139, 140, 348
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	4 cut(s)	228, 344, 347, 350
BseYI	CCCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	131
BslI	CCNNNNNNNGG	3 cut(s)	139, 140, 348
BsnI	GGCC	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	361
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	300, 308
BspACI	CCGC	2 cut(s)	150, 329
BspANI	GGCC	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	132
BspT104I	TTCGAA	1 cut(s)	361
BspTI	CTTAAG	1 cut(s)	274
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	133, 348
BssMI	GATC	2 cut(s)	300, 308
Bst2UI	CCWGG	2 cut(s)	135, 349
Bst4CI	ACNGT	1 cut(s)	296
BstAFI	CTTAAG	1 cut(s)	274
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstAUI	TGTACA	1 cut(s)	81
BstBI	TTCGAA	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	126, 402
BstKTI	GATC	2 cut(s)	303, 311
BstMBI	GATC	2 cut(s)	300, 308
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 152, 161, 335, 338, 344
BstNI	CCWGG	2 cut(s)	135, 349
BstSCI	CCNGG	2 cut(s)	133, 347
BstSFI	CTRYAG	1 cut(s)	37
BstV1I	GCAGC	4 cut(s)	228, 344, 347, 350
BstX2I	RGATCY	2 cut(s)	300, 308
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	2 cut(s)	300, 308
BsuRI	GGCC	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	148
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	130
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	4 cut(s)	48, 79, 169, 238
CviJI	RGCY	4 cut(s)	131, 200, 341, 347
CviKI_1	RGCY	4 cut(s)	131, 200, 341, 347
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	126, 402
DpnI	GATC	2 cut(s)	302, 310
DpnII	GATC	2 cut(s)	300, 308
Eco32I	GATATC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	133, 347
EcoRV	GATATC	1 cut(s)	271
FaeI	CATG	4 cut(s)	51, 82, 172, 241
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FatI	CATG	4 cut(s)	47, 78, 168, 237
FauNDI	CATATG	1 cut(s)	31
Fnu4HI	GCNGC	5 cut(s)	242, 330, 333, 336, 339
Fsp4HI	GCNGC	5 cut(s)	242, 330, 333, 336, 339
GluI	GCNGC	5 cut(s)	242, 330, 333, 336, 339
GsaI	CCCAGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	131
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	51, 82, 172, 241
HinfI	GANTC	2 cut(s)	249, 388
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	2 cut(s)	306, 392
HpyAV	CCTTC	2 cut(s)	51, 197
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	3 cut(s)	17, 29, 314
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 152, 161, 335, 338, 344
HpyF3I	CTNAG	2 cut(s)	126, 402
Hsp92II	CATG	4 cut(s)	51, 82, 172, 241
Kzo9I	GATC	2 cut(s)	300, 308
LpnPI	CCDG	9 cut(s)	120, 147, 230, 240, 246, 319, 334, 361, 377
Lsp1109I	GCAGC	4 cut(s)	228, 344, 347, 350
MalI	GATC	2 cut(s)	302, 310
MboI	GATC	2 cut(s)	300, 308
MflI	RGATCY	2 cut(s)	300, 308
MluCI	AATT	2 cut(s)	88, 258
MlyI	GAGTC	1 cut(s)	397
MnlI	CCTC	2 cut(s)	215, 280
MseI	TTAA	2 cut(s)	159, 275
MslI	CAYNNNNRTG	1 cut(s)	321
MspCI	CTTAAG	1 cut(s)	274
MspR9I	CCNGG	2 cut(s)	135, 349
MvaI	CCWGG	2 cut(s)	135, 349
MwoI	GCNNNNNNNGC	6 cut(s)	128, 152, 161, 335, 338, 344
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	2 cut(s)	300, 308
NlaIII	CATG	4 cut(s)	51, 82, 172, 241
NlaIV	GGNNCC	1 cut(s)	132
NspV	TTCGAA	1 cut(s)	361
OliI	CACNNNNGTG	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	249
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	5 cut(s)	243, 331, 334, 337, 340
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	133, 347
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	2 cut(s)	133, 347
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	300, 308
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	159, 275
SatI	GCNGC	5 cut(s)	242, 330, 333, 336, 339
Sau3AI	GATC	2 cut(s)	300, 308
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	2 cut(s)	135, 349
SetI	ASST	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	37
SfuI	TTCGAA	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	2 cut(s)	88, 258
SsiI	CCGC	2 cut(s)	150, 329
StyD4I	CCNGG	2 cut(s)	133, 347
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	361
TasI	AATT	2 cut(s)	88, 258
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	2 cut(s)	159, 275
Tru9I	TTAA	2 cut(s)	159, 275
TseI	GCWGC	4 cut(s)	241, 332, 335, 338
TspDTI	ATGAA	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	348
Vha464I	CTTAAG	1 cut(s)	274
XapI	RAATTY	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.