Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Forward (+)

63125176 .. 63131867

Gene Structure 6692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGACTTTCCTTTGGACCAAAATGAGGTCTATGAATGGCAAAGTGAGGCAGAGTCTCTTAATTCATGTCACTGGCATAAGGGTGATTGCATGTGGAGTGGGCGCCAGTTGTGCTGTTAATGCTATCACGTTGCTTGATATATTCCTCCAGCCCACAGTTCCTGCGGTGCTGCTGGGAAACATTCATGTCTCAGGATCTAGACATTTGGGCGGCGCTGCAGTAGCAGCCATAGCCTCGGTACGACTTCGGATGGGGCTTCAGGTTTCTGCAGGTTCTATACATAACTTCAAACCACTTGCGTCCTCTCTTCTCCTGGACATCAATACTGTTGTTTCATACATTACACCACATACCTGGCAGTCAAATCTATCATGCCTTTCGAGCTTGAATAATTTGTATAGAATGGTCGATAAAGATTCAAAAAAGAACTTGGAGGTTCTTTGGTGGAGAGTTAAGACCTACCGGTTTGTTAACATAATTGAAATCAAAAGCAAGAATAATGGTCATTCCTCATTTAGCCCATATAGCATGTGGCATCAAACAATCAAAAGGTTGAGGCTTCTTGTTGATAAAAATGATGAAGATTCTTCAATTGGGATTGCCAAGCAACCGGACACTCTAGATGAGCAAGATGTAGGTTATATCGGTGAACTGCTCAAGTCTCGTGCGGATGGTTATATAAGTAATGAAGCTCTATTCAAGAGAGTTATATTGCCGAATTTGAAACTGCAGTTGAGATGGAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

250

Amino Acids

28.03

Weight (kDa)

9.89

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	104
AciI	CCGC	3 cut(s)	167, 213, 671
AclWI	GGATC	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	721
AcuI	CTGAAG	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgeI	ACCGGT	1 cut(s)	465
AgsI	TTSAA	7 cut(s)	292, 391, 423, 485, 594, 703, 727
AjnI	CCWGG	2 cut(s)	315, 356
AluBI	AGCT	2 cut(s)	387, 695
AluI	AGCT	2 cut(s)	387, 695
Alw26I	GTCTC	3 cut(s)	62, 196, 669
AlwI	GGATC	1 cut(s)	205
AlwNI	CAGNNNCTG	1 cut(s)	164
ApeKI	GCWGC	3 cut(s)	172, 218, 227
ApoI	RAATTY	1 cut(s)	721
AsiGI	ACCGGT	1 cut(s)	465
AspLEI	GCGC	2 cut(s)	107, 218
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	2 cut(s)	97, 662
AvaII	GGWCC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	104
BauI	CACGAG	1 cut(s)	666
BbvI	GCAGC	3 cut(s)	159, 205, 239
BccI	CCATC	3 cut(s)	247, 668, 735
BciT130I	CCWGG	2 cut(s)	317, 358
BcoDI	GTCTC	3 cut(s)	62, 196, 669
BfaI	CTAG	2 cut(s)	201, 623
BfmI	CTRYAG	3 cut(s)	219, 270, 731
BfoI	RGCGCY	2 cut(s)	108, 219
BfuAI	ACCTGC	1 cut(s)	263
BisI	GCNGC	4 cut(s)	173, 214, 219, 228
BlsI	GCNGC	4 cut(s)	174, 215, 220, 229
Bme1390I	CCNGG	2 cut(s)	317, 358
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	317, 358
BmsI	GCATC	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	644
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	2 cut(s)	465, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	465
Bse1I	ACTGG	2 cut(s)	79, 108
BseBI	CCWGG	2 cut(s)	317, 358
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	258, 679
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	79, 108
BseXI	GCAGC	3 cut(s)	159, 205, 239
BseYI	CCCAGC	1 cut(s)	175
BshNI	GGYRCC	1 cut(s)	104
BshTI	ACCGGT	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	466, 614
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	3 cut(s)	62, 196, 669
Bsp143I	GATC	1 cut(s)	197
BspACI	CCGC	3 cut(s)	167, 213, 671
BspCNI	CTCAG	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	106
BspMAI	CTGCAG	3 cut(s)	223, 274, 735
BspMI	ACCTGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	79, 108
BssAI	RCCGGY	1 cut(s)	465
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	197
BssNI	GRCGYC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	666
Bst2BI	CACGAG	1 cut(s)	666
Bst2UI	CCWGG	2 cut(s)	317, 358
Bst4CI	ACNGT	2 cut(s)	160, 331
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	258, 679
BstH2I	RGCGCY	2 cut(s)	108, 219
BstHHI	GCGC	2 cut(s)	107, 218
BstKTI	GATC	1 cut(s)	200
BstMAI	GTCTC	3 cut(s)	62, 196, 669
BstMBI	GATC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	7 cut(s)	113, 122, 224, 227, 233, 384, 528
BstNI	CCWGG	2 cut(s)	317, 358
BstNSI	RCATGY	2 cut(s)	96, 535
BstSCI	CCNGG	2 cut(s)	315, 356
BstSFI	CTRYAG	3 cut(s)	219, 270, 731
BstV1I	GCAGC	3 cut(s)	159, 205, 239
BstX2I	RGATCY	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	258, 679
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	263
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	2 cut(s)	107, 218
Cfr10I	RCCGGY	1 cut(s)	465
Cfr13I	GGNCC	1 cut(s)	18
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	242
CspAI	ACCGGT	1 cut(s)	465
CviAII	CATG	5 cut(s)	68, 93, 188, 375, 532
CviJI	RGCY	8 cut(s)	154, 230, 236, 259, 387, 522, 562, 695
CviKI_1	RGCY	8 cut(s)	154, 230, 236, 259, 387, 522, 562, 695
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	193
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	315, 356
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
FaeI	CATG	5 cut(s)	71, 96, 191, 378, 535
FatI	CATG	5 cut(s)	67, 92, 187, 374, 531
Fnu4HI	GCNGC	4 cut(s)	173, 214, 219, 228
FokI	GGATG	2 cut(s)	265, 686
Fsp4HI	GCNGC	4 cut(s)	173, 214, 219, 228
FspBI	CTAG	2 cut(s)	201, 623
GlaI	GCGC	2 cut(s)	106, 217
GluI	GCNGC	4 cut(s)	173, 214, 219, 228
GsaI	CCCAGC	1 cut(s)	179
GsuI	CTGGAG	1 cut(s)	134
HaeII	RGCGCY	2 cut(s)	108, 219
HapII	CCGG	2 cut(s)	466, 614
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	2 cut(s)	107, 218
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	5 cut(s)	71, 96, 191, 378, 535
Hin6I	GCGC	2 cut(s)	105, 216
HinP1I	GCGC	2 cut(s)	105, 216
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	3 cut(s)	55, 419, 587
HpaI	GTTAAC	1 cut(s)	475
HpaII	CCGG	2 cut(s)	466, 614
HphI	GGTGA	2 cut(s)	97, 662
Hpy166II	GTNNAC	2 cut(s)	475, 653
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	4 cut(s)	195, 201, 623, 703
Hpy8I	GTNNAC	2 cut(s)	475, 653
HpyCH4III	ACNGT	2 cut(s)	160, 331
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	4 cut(s)	92, 221, 272, 733
HpyF10VI	GCNNNNNNNGC	7 cut(s)	113, 122, 224, 227, 233, 384, 528
HpyF3I	CTNAG	1 cut(s)	193
HpySE526I	ACGT	1 cut(s)	131
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	5 cut(s)	71, 96, 191, 378, 535
HspAI	GCGC	2 cut(s)	105, 216
KasI	GGCGCC	1 cut(s)	104
KspAI	GTTAAC	1 cut(s)	475
Kzo9I	GATC	1 cut(s)	197
Lsp1109I	GCAGC	3 cut(s)	159, 205, 239
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	2 cut(s)	201, 623
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MboII	GAAGA	3 cut(s)	302, 582, 596
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	1 cut(s)	197
MluCI	AATT	5 cut(s)	63, 394, 480, 594, 721
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	8 cut(s)	21, 42, 158, 247, 316, 430, 523, 552
MseI	TTAA	4 cut(s)	62, 120, 456, 474
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	2 cut(s)	466, 614
MspR9I	CCNGG	2 cut(s)	317, 358
MunI	CAATTG	1 cut(s)	594
MvaI	CCWGG	2 cut(s)	317, 358
MwoI	GCNNNNNNNGC	7 cut(s)	113, 122, 224, 227, 233, 384, 528
NarI	GGCGCC	1 cut(s)	105
NdeII	GATC	1 cut(s)	197
NlaIII	CATG	5 cut(s)	71, 96, 191, 378, 535
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	2 cut(s)	96, 535
PfeI	GAWTC	2 cut(s)	419, 587
PfoI	TCCNGGA	1 cut(s)	315
PinAI	ACCGGT	1 cut(s)	465
PkrI	GCNGC	4 cut(s)	174, 215, 220, 229
PleI	GAGTC	1 cut(s)	63
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	315, 356
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	2 cut(s)	315, 356
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	18
PstI	CTGCAG	3 cut(s)	223, 274, 735
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	197
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	4 cut(s)	62, 120, 456, 474
SatI	GCNGC	4 cut(s)	173, 214, 219, 228
Sau3AI	GATC	1 cut(s)	197
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	2 cut(s)	317, 358
SfaNI	GCATC	1 cut(s)	547
SfcI	CTRYAG	3 cut(s)	219, 270, 731
SfoI	GGCGCC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	5 cut(s)	63, 394, 480, 594, 721
SsiI	CCGC	3 cut(s)	167, 213, 671
SspDI	GGCGCC	1 cut(s)	104
SspMI	CTAG	2 cut(s)	201, 623
StyD4I	CCNGG	2 cut(s)	315, 356
TaaI	ACNGT	2 cut(s)	160, 331
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	2 cut(s)	383, 411
TasI	AATT	5 cut(s)	63, 394, 480, 594, 721
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	419, 587
Tru1I	TTAA	4 cut(s)	62, 120, 456, 474
Tru9I	TTAA	4 cut(s)	62, 120, 456, 474
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	3 cut(s)	172, 218, 227
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	6 cut(s)	50, 56, 176, 327, 597, 705
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	18
XapI	RAATTY	1 cut(s)	721
XbaI	TCTAGA	2 cut(s)	200, 622
XceI	RCATGY	2 cut(s)	96, 535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	531
XspI	CTAG	2 cut(s)	201, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.