Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001329

Physical Location & Seq

Genomic Coordinates Reverse (-)

4301398 .. 4307024

Gene Structure 5627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG059800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAGGATACTATACCCTCTAAACCCTATATTCTTGTACGACAATTTACTACCTCATTATACAATTTTATGCTTGGACGTGTTCACACAATGATAACTCCTGCAATTACTCATGCGGATGTTGGGCATATGGTGTTTAACATGATCGGACTGTATTATTTTGGGAGGAATATTGGTAGAGTTTTTGGGCCTGAATTTTTGCTGAAGTTGTATGTAGCTGGAGCTATTGGTGGCTCAGTCTTTTACTTGGTGCACCATACCTTCCTGAACCTGATCACTCCAACAGAGGGCAGAAAAGAGAATATCAGTATCAAACCAAAATTGGGCGCAAGTTGTGCTGTTAATGCTATCATGTTGCTTGATATATTCCTCCACCCCACAGTTCCTGCGGTGCTGCTGGGGATCTTTCTAATTGGGAAGGATATTCCAAGGATAATGGAGGGAAACATTCATGTCTCAGGATCTAGACACTTGGGCGGCACTGCAGTAGCAGCTATAGCCTGGGTACGACTTCGGATGGGGCTTCGGATAGCAGATCCTGTATTCATGGTCAAGAGTTTTACTCTCTTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

191

Amino Acids

21.11

Weight (kDa)

9.81

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	27 - 169	4e-17	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18600
fragaria_vesca	FvH4_5g13610 FvH4_5g13610 FvH4_5g13610 FvH4_5g13620 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640 FvH4_5g13640
malus_domestica	MD14G1214000.v1.1
prunus_persica	Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.3G124800_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207200_v2.0.a1 Prupe.5G207300_v2.0.a1
pyrus_communis	pycom14g17740 pycom16g17930
rosa_chinensis	RchiOBHm_Chr1g0346931 RchiOBHm_Chr1g0346941 RchiOBHm_Chr6g0258631 RchiOBHm_Chr6g0258651 RchiOBHm_Chr7g0183321 RchiOBHm_Chr7g0183341 RchiOBHm_Chr7g0198541
rosa_laevigata	RLG00000005055 RLG00000005057 RLG00000024525
rosa_multiflora	Rmu_co8273229.1_g000001 Rmu_sc0008602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110010 Rroxscaffold_3G00270550 Rroxscaffold_3G00270560
rosa_rugosa	Rorug03G0286600.1 Rorug04G0408600 Rorug06G0456400 Rorug06G0456500 Rorug06G0456600 Rorug06G0456600 Rorug06G0456800 Rorug07G0030500
rosa_samantha	Rh7AG058100 Rh7AG058300 Rh7BG057900 Rh7BG058200 Rh7CG059500 Rh7CG059700 Rh7CG059800 Rh7CG059900 Rh7DG057800 Rh7DG058000
rosa_wichuraiana	Rw7G004770 Rw7G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	116, 389, 477
AclWI	GGATC	3 cut(s)	410, 469, 530
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	2 cut(s)	39, 507
AfiI	CCNNNNNNNGG	2 cut(s)	287, 323
AflIII	ACRYGT	1 cut(s)	79
AjiI	CACGTC	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	3 cut(s)	218, 224, 494
AluI	AGCT	3 cut(s)	218, 224, 494
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	460
Alw44I	GTGCAC	1 cut(s)	251
AlwI	GGATC	3 cut(s)	410, 469, 530
AlwNI	CAGNNNCTG	2 cut(s)	386, 539
AoxI	GGCC	1 cut(s)	188
ApaLI	GTGCAC	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	394, 491
ApoI	RAATTY	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	188
BaeGI	GKGCMC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	381, 503
BccI	CCATC	1 cut(s)	511
BciT130I	CCWGG	1 cut(s)	502
BclI	TGATCA	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	1 cut(s)	465
BfmI	CTRYAG	2 cut(s)	483, 495
BisI	GCNGC	3 cut(s)	395, 478, 492
BlsI	GCNGC	3 cut(s)	396, 479, 493
Bme1390I	CCNGG	1 cut(s)	502
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	502
BplI	GAGNNNNNCTC	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	428, 501
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 323
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	2 cut(s)	428, 501
BseGI	GGATG	2 cut(s)	124, 522
BseLI	CCNNNNNNNGG	2 cut(s)	287, 323
BseMII	CTCAG	2 cut(s)	249, 471
BseSI	GKGCMC	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	381, 503
BseYI	CCCAGC	1 cut(s)	397
BshFI	GGCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	287, 323
BsmAI	GTCTC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	5 cut(s)	144, 273, 402, 461, 535
BspACI	CCGC	3 cut(s)	116, 389, 477
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	248, 470
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	3 cut(s)	410, 469, 530
BssECI	CCNNGG	2 cut(s)	428, 501
BssMI	GATC	5 cut(s)	144, 273, 402, 461, 535
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	153, 382
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstDEI	CTNAG	2 cut(s)	235, 457
BstF5I	GGATG	2 cut(s)	124, 522
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	5 cut(s)	147, 276, 405, 464, 538
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	5 cut(s)	144, 273, 402, 461, 535
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 344, 491, 497
BstNI	CCWGG	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	500
BstSFI	CTRYAG	2 cut(s)	483, 495
BstSLI	GKGCMC	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	381, 503
BstX2I	RGATCY	3 cut(s)	402, 461, 535
BstYI	RGATCY	3 cut(s)	402, 461, 535
BsuRI	GGCC	1 cut(s)	190
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	124, 522
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
CaiI	CAGNNNCTG	2 cut(s)	386, 539
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	38, 506
CviAII	CATG	5 cut(s)	113, 142, 352, 452, 547
CviJI	RGCY	7 cut(s)	190, 218, 224, 234, 494, 500, 523
CviKI_1	RGCY	7 cut(s)	190, 218, 224, 234, 494, 500, 523
CviQI	GTAC	2 cut(s)	38, 506
DdeI	CTNAG	2 cut(s)	235, 457
DpnI	GATC	5 cut(s)	146, 275, 404, 463, 537
DpnII	GATC	5 cut(s)	144, 273, 402, 461, 535
Eco130I	CCWWGG	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	5 cut(s)	116, 145, 355, 455, 550
FatI	CATG	5 cut(s)	112, 141, 351, 451, 546
FauNDI	CATATG	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	395, 478, 492
FokI	GGATG	2 cut(s)	131, 529
Fsp4HI	GCNGC	3 cut(s)	395, 478, 492
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	3 cut(s)	395, 478, 492
GsaI	CCCAGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	5 cut(s)	116, 145, 355, 455, 550
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
Hpy166II	GTNNAC	2 cut(s)	85, 253
Hpy188I	TCNGA	3 cut(s)	149, 516, 528
Hpy188III	TCNNGA	4 cut(s)	265, 459, 465, 553
Hpy8I	GTNNAC	2 cut(s)	85, 253
HpyAV	CCTTC	2 cut(s)	271, 412
HpyCH4III	ACNGT	2 cut(s)	153, 382
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	104, 253, 485
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 344, 491, 497
HpyF3I	CTNAG	2 cut(s)	235, 457
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	5 cut(s)	116, 145, 355, 455, 550
HspAI	GCGC	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	5 cut(s)	144, 273, 402, 461, 535
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	2 cut(s)	381, 503
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	1 cut(s)	79
MalI	GATC	5 cut(s)	146, 275, 404, 463, 537
MboI	GATC	5 cut(s)	144, 273, 402, 461, 535
MflI	RGATCY	3 cut(s)	402, 461, 535
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	6 cut(s)	44, 64, 105, 194, 320, 411
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	6 cut(s)	28, 64, 159, 280, 380, 433
MseI	TTAA	2 cut(s)	138, 342
MslI	CAYNNNNRTG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	4 cut(s)	335, 344, 491, 497
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	5 cut(s)	144, 273, 402, 461, 535
NlaIII	CATG	5 cut(s)	116, 145, 355, 455, 550
PkrI	GCNGC	3 cut(s)	396, 479, 493
Psp6I	CCWGG	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	500
PspPI	GGNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	2 cut(s)	386, 539
PsuI	RGATCY	3 cut(s)	402, 461, 535
RsaI	GTAC	2 cut(s)	39, 507
RsaNI	GTAC	2 cut(s)	38, 506
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	138, 342
SatI	GCNGC	3 cut(s)	395, 478, 492
Sau3AI	GATC	5 cut(s)	144, 273, 402, 461, 535
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	7 cut(s)	56, 82, 220, 226, 263, 273, 496
SfcI	CTRYAG	2 cut(s)	483, 495
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	6 cut(s)	44, 64, 105, 194, 320, 411
SsiI	CCGC	3 cut(s)	116, 389, 477
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	500
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	2 cut(s)	153, 382
TaiI	ACGT	1 cut(s)	82
TasI	AATT	6 cut(s)	44, 64, 105, 194, 320, 411
TauI	GCSGC	1 cut(s)	480
Tru1I	TTAA	2 cut(s)	138, 342
Tru9I	TTAA	2 cut(s)	138, 342
TscAI	CASTG	1 cut(s)	487
TseI	GCWGC	2 cut(s)	394, 491
TspDTI	ATGAA	2 cut(s)	440, 535
TspRI	CASTG	1 cut(s)	487
VneI	GTGCAC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	464
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.