Rh7CG059500

Rhomboid family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001329
Physical Location & Seq
Reverse (-)
4291107 .. 4295440
4334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG059500.1

Sequence Viewer

Length: 939 bp
ATGCAGAGGCTTGTTTCTGTGAAATTAGCCTCAAACCTCCCCAAAAACCTATCAACCTCCGCCACCACCCAAAGCTCTTCCCTTTTCCACTTCCAACCTCACAAAACCTTCTCTCTCACGAAACCACCCCAAACCCAGACCCAAAATCACTTCTTTAGCTCCTTCCCCACACACCCACTTCCCCATCAGCACAATCTCACTCACAAAATTCATGGCTTTCTCTCCAACCCAGTACTCAGAAAACACTTTTCTTTGGATTCCGCAAATACCCTTTTGAGGGTATCGAGCAAGAGGCTTTCGGATTGCAGGCTTGCCTTTCTCCAAAGCAAGTTTCCCAAACAGAGTTTTAACTTCAACCCAAGTCGTATTTCTAATCAGAGTGCCTGGAGAACATGGTTGCGAAGGTTATCAAGCGGTGACATGGTTTTGGGATTGGTTGTAGCTAATGTTGCTGTTTTTCTTTTATGGAGGATAGCAGACCCTATATTCATGTACAAGAATTTTACTATCTCATTAAACAATTTTACAAGTGGACGTCTTCACACATTGATAACTTCTGCATTTAGTCACGTTGATATTTGGCATATCATTTCTAACATGATCGGACTGTATTTTTTTGGGATCAATATTGGAAGAACTTTTGGGCCTGAGTTTTTGCTGAAGTTGTATCTAGCTGGAGCTATTGGTGGCTCAGTCTTTTACTTGGTGCACCATGCCTTCCTGGCTGCATCATCGAAGAATCGACCATTTGGGATTATGGACGCTTCCACGGCCCCAGGATTGGGGGCAAGCGGTGCTGTTAATGCTATCATGTTGCTTGATATATTCCTTCACCCCACAGCTACCCTCTACCTTGATTTTATCATACCAGTTCCTGCCATGCTGCTGGGAATCTTTCTAATTGGAAAGGATATCTTAAGAATAATGGAGGTACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid

Protein Analysis

312

Amino Acids

34.92

Weight (kDa)

10.61

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 178 - 301 3.1e-20 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 538
AciI CCGC 4 cut(s) 60, 261, 414, 792
AclWI GGATC 1 cut(s) 629
AcsI RAATTY 2 cut(s) 207, 499
AcuI CTGAAG 1 cut(s) 680
AcyI GRCGYC 1 cut(s) 535
AfaI GTAC 3 cut(s) 234, 494, 933
AfiI CCNNNNNNNGG 4 cut(s) 276, 277, 781, 782
AflII CTTAAG 1 cut(s) 916
AgsI TTSAA 1 cut(s) 355
AjnI CCWGG 3 cut(s) 383, 720, 775
AjuI GAANNNNNNNTTGG 4 cut(s) 315, 347, 352, 384
AluBI AGCT 6 cut(s) 75, 159, 443, 674, 680, 842
AluI AGCT 6 cut(s) 75, 159, 443, 674, 680, 842
Alw21I GWGCWC 1 cut(s) 711
Alw44I GTGCAC 1 cut(s) 707
AlwI GGATC 1 cut(s) 629
AlwNI CAGNNNCTG 1 cut(s) 875
AoxI GGCC 2 cut(s) 644, 771
ApaLI GTGCAC 1 cut(s) 707
ApeKI GCWGC 2 cut(s) 725, 883
ApoI RAATTY 2 cut(s) 207, 499
AspS9I GGNCC 2 cut(s) 644, 772
AsuHPI GGTGA 2 cut(s) 428, 824
BaeGI GKGCMC 1 cut(s) 711
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 2 cut(s) 712, 870
BccI CCATC 1 cut(s) 192
BceAI ACGGC 1 cut(s) 786
BciT130I CCWGG 3 cut(s) 385, 722, 777
BfaI CTAG 1 cut(s) 671
BfrI CTTAAG 1 cut(s) 916
BglI GCCNNNNNGGC 1 cut(s) 722
BisI GCNGC 2 cut(s) 726, 884
BlsI GCNGC 2 cut(s) 727, 885
BmcAI AGTACT 1 cut(s) 234
Bme1390I CCNGG 3 cut(s) 385, 722, 777
BmgT120I GGNCC 2 cut(s) 644, 772
BmiI GGNNCC 1 cut(s) 774
BmrFI CCNGG 3 cut(s) 385, 722, 777
BmrI ACTGGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 737
BmuI ACTGGG 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 2 cut(s) 406, 696
BsaHI GRCGYC 1 cut(s) 535
BsaJI CCNNGG 2 cut(s) 768, 775
Bsc4I CCNNNNNNNGG 4 cut(s) 276, 277, 781, 782
Bse1I ACTGG 2 cut(s) 230, 869
BseBI CCWGG 3 cut(s) 385, 722, 777
BseDI CCNNGG 2 cut(s) 768, 775
BseLI CCNNNNNNNGG 4 cut(s) 276, 277, 781, 782
BseMII CTCAG 3 cut(s) 250, 639, 705
BseNI ACTGG 2 cut(s) 230, 869
BseSI GKGCMC 1 cut(s) 711
BseXI GCAGC 2 cut(s) 712, 870
BseYI CCCAGC 1 cut(s) 886
BshFI GGCC 2 cut(s) 646, 773
BsiHKAI GWGCWC 1 cut(s) 711
BslI CCNNNNNNNGG 4 cut(s) 276, 277, 781, 782
BsnI GGCC 2 cut(s) 646, 773
Bsp1286I GDGCHC 1 cut(s) 711
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 2 cut(s) 600, 621
BspACI CCGC 4 cut(s) 60, 261, 414, 792
BspANI GGCC 2 cut(s) 646, 773
BspCNI CTCAG 3 cut(s) 249, 640, 704
BspLI GGNNCC 1 cut(s) 774
BspPI GGATC 1 cut(s) 629
BspQI GCTCTTC 1 cut(s) 82
BspTI CTTAAG 1 cut(s) 916
BsrGI TGTACA 1 cut(s) 492
BsrI ACTGG 2 cut(s) 230, 869
BssECI CCNNGG 2 cut(s) 768, 775
BssMI GATC 2 cut(s) 600, 621
BssNI GRCGYC 1 cut(s) 535
Bst2UI CCWGG 3 cut(s) 385, 722, 777
Bst4CI ACNGT 1 cut(s) 609
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 535
BstAFI CTTAAG 1 cut(s) 916
BstAPI GCANNNNNTGC 1 cut(s) 794
BstAUI TGTACA 1 cut(s) 492
BstC8I GCNNGC 3 cut(s) 308, 312, 790
BstDEI CTNAG 3 cut(s) 236, 648, 691
BstDSI CCRYGG 1 cut(s) 768
BstKTI GATC 2 cut(s) 603, 624
BstMBI GATC 2 cut(s) 600, 621
BstMWI GCNNNNNNNGC 5 cut(s) 449, 722, 770, 794, 803
BstNI CCWGG 3 cut(s) 385, 722, 777
BstSCI CCNGG 3 cut(s) 383, 720, 775
BstSLI GKGCMC 1 cut(s) 711
BstV1I GCAGC 2 cut(s) 712, 870
BstV2I GAAGAC 1 cut(s) 530
BstXI CCANNNNNNTGG 1 cut(s) 886
BsuRI GGCC 2 cut(s) 646, 773
BtgI CCRYGG 1 cut(s) 768
Cac8I GCNNGC 3 cut(s) 308, 312, 790
CaiI CAGNNNCTG 1 cut(s) 875
Cfr13I GGNCC 2 cut(s) 644, 772
CseI GACGC 1 cut(s) 770
Csp6I GTAC 3 cut(s) 233, 493, 932
CviAII CATG 8 cut(s) 212, 393, 421, 490, 598, 713, 811, 880
CviQI GTAC 3 cut(s) 233, 493, 932
DdeI CTNAG 3 cut(s) 236, 648, 691
DpnI GATC 2 cut(s) 602, 623
DpnII GATC 2 cut(s) 600, 621
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
EciI GGCGGA 1 cut(s) 49
Eco32I GATATC 1 cut(s) 913
Eco57I CTGAAG 1 cut(s) 680
EcoRII CCWGG 3 cut(s) 383, 720, 775
EcoRV GATATC 1 cut(s) 913
FaeI CATG 8 cut(s) 215, 396, 424, 493, 601, 716, 814, 883
FalI AAGNNNNNCTT 2 cut(s) 899, 931
FatI CATG 8 cut(s) 211, 392, 420, 489, 597, 712, 810, 879
Fnu4HI GCNGC 2 cut(s) 726, 884
Fsp4HI GCNGC 2 cut(s) 726, 884
FspBI CTAG 1 cut(s) 671
GluI GCNGC 2 cut(s) 726, 884
GsaI CCCAGC 1 cut(s) 890
GsuI CTGGAG 2 cut(s) 406, 696
HaeIII GGCC 2 cut(s) 646, 773
HgaI GACGC 1 cut(s) 770
Hin1I GRCGYC 1 cut(s) 535
Hin1II CATG 8 cut(s) 215, 396, 424, 493, 601, 716, 814, 883
HinfI GANTC 3 cut(s) 257, 739, 891
HphI GGTGA 2 cut(s) 428, 824
Hpy166II GTNNAC 2 cut(s) 533, 709
Hpy188I TCNGA 4 cut(s) 239, 301, 378, 605
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 533, 709
HpyAV CCTTC 5 cut(s) 118, 172, 396, 727, 839
HpyCH4III ACNGT 1 cut(s) 609
HpyCH4IV ACGT 3 cut(s) 535, 570, 934
HpyCH4V TGCA 5 cut(s) 4, 306, 560, 709, 728
HpyF10VI GCNNNNNNNGC 5 cut(s) 449, 722, 770, 794, 803
HpyF3I CTNAG 3 cut(s) 236, 648, 691
HpySE526I ACGT 3 cut(s) 535, 570, 934
Hsp92I GRCGYC 1 cut(s) 535
Hsp92II CATG 8 cut(s) 215, 396, 424, 493, 601, 716, 814, 883
Kzo9I GATC 2 cut(s) 600, 621
LguI GCTCTTC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 164, 677
Lsp1109I GCAGC 2 cut(s) 712, 870
LweI GCATC 1 cut(s) 737
MaeI CTAG 1 cut(s) 671
MaeII ACGT 3 cut(s) 535, 570, 934
MaeIII GTNAC 2 cut(s) 416, 566
MalI GATC 2 cut(s) 602, 623
MboI GATC 2 cut(s) 600, 621
MboII GAAGA 4 cut(s) 69, 530, 645, 748
MhlI GDGCHC 1 cut(s) 711
MluCI AATT 5 cut(s) 23, 207, 499, 520, 900
MmeI TCCRAC 2 cut(s) 118, 249
MnlI CCTC 9 cut(s) 40, 47, 67, 108, 270, 285, 462, 857, 922
MseI TTAA 4 cut(s) 348, 515, 801, 917
MspCI CTTAAG 1 cut(s) 916
MspR9I CCNGG 3 cut(s) 385, 722, 777
MvaI CCWGG 3 cut(s) 385, 722, 777
MwoI GCNNNNNNNGC 5 cut(s) 449, 722, 770, 794, 803
NdeII GATC 2 cut(s) 600, 621
NlaIII CATG 8 cut(s) 215, 396, 424, 493, 601, 716, 814, 883
NlaIV GGNNCC 1 cut(s) 774
NmuCI GTSAC 2 cut(s) 416, 566
PciSI GCTCTTC 1 cut(s) 82
PfeI GAWTC 3 cut(s) 257, 739, 891
PkrI GCNGC 2 cut(s) 727, 885
Psp6I CCWGG 3 cut(s) 383, 720, 775
PspFI CCCAGC 1 cut(s) 886
PspGI CCWGG 3 cut(s) 383, 720, 775
PspN4I GGNNCC 1 cut(s) 774
PspPI GGNCC 2 cut(s) 644, 772
PstNI CAGNNNCTG 1 cut(s) 875
RsaI GTAC 3 cut(s) 234, 494, 933
RsaNI GTAC 3 cut(s) 233, 493, 932
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 4 cut(s) 348, 515, 801, 917
SatI GCNGC 2 cut(s) 726, 884
Sau3AI GATC 2 cut(s) 600, 621
Sau96I GGNCC 2 cut(s) 644, 772
ScaI AGTACT 1 cut(s) 234
ScrFI CCNGG 3 cut(s) 385, 722, 777
SduI GDGCHC 1 cut(s) 711
SfaNI GCATC 1 cut(s) 737
SmlI CTYRAG 1 cut(s) 916
SmoI CTYRAG 1 cut(s) 916
Sse9I AATT 5 cut(s) 23, 207, 499, 520, 900
SsiI CCGC 4 cut(s) 60, 261, 414, 792
SspI AATATT 1 cut(s) 628
SspMI CTAG 1 cut(s) 671
StyD4I CCNGG 3 cut(s) 383, 720, 775
TaaI ACNGT 1 cut(s) 609
TaiI ACGT 3 cut(s) 538, 573, 937
TaqI TCGA 3 cut(s) 284, 734, 742
TasI AATT 5 cut(s) 23, 207, 499, 520, 900
TatI WGTACW 2 cut(s) 232, 492
TfiI GAWTC 3 cut(s) 257, 739, 891
Tru1I TTAA 4 cut(s) 348, 515, 801, 917
Tru9I TTAA 4 cut(s) 348, 515, 801, 917
TseFI GTSAC 2 cut(s) 416, 566
TseI GCWGC 2 cut(s) 725, 883
Tsp45I GTSAC 2 cut(s) 416, 566
TspDTI ATGAA 2 cut(s) 200, 478
Vha464I CTTAAG 1 cut(s) 916
VneI GTGCAC 1 cut(s) 707
XapI RAATTY 2 cut(s) 207, 499
XspI CTAG 1 cut(s) 671
ZraI GACGTC 1 cut(s) 536
ZrmI AGTACT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.