pycom16g17930

Rhomboid family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001329
Physical Location & Seq
Reverse (-)
14294081 .. 14294999
919 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g17930.2

Sequence Viewer

Length: 876 bp
ATGAAAGAGGCGTTCGCCGACGTTGATAGGACGCTGACGGTGAAAGACACGCTCAAGCCGGTTTTAATTCCGTGCTACGACCTTTCCAGTAGAGCGCCGTTTCTGTTTTCCAGGGCCGACGCGCTCGAGACCGACAGTTACGACTTCCGCCTCTGGGAGGTCTGCCGCGCCACGTCAGCCGAGCCGGTAATCTTCCTCTCCATACATGCAGCTCCTCTCGGCAAAGAACTTCAGCACCACCCTCATCCATGGCGGTCGCAGCACATTCTCGCGCAAAAAATTCATGGGTTTCTCTCCAACCCATCACTCAGAAAGCAATCCTTTCTGGGTTTCTCGAATACCCTTCTGAGAGCTTCAAGCAAGAGCCTTTCGGACTGCAGAGTCGGATTCCTCAGAGCCCAATTTCCCAAACGGAGCTTTAAGTTCAACCAGAATTTCACTTCTCATCGGAGTTCATGGAGGTCGTGGTTCGGGAGGTTATCGAATAATGAAGTGGTTTTGGGATTGATTGTCGCTAATGTTGCTGTTTTTCTTTTATGGAGGATTGCAGATCGTAGCTTCATGATGAATAATTTTACCATTTCATTACACAATTTTGCAAGTGGACGGCTGCACACGTTGATAACTTCGGCATTCAGCCATATTGATACTGGGCATATCTTTTCTAACATGATCGGACTATATTTTTTTGGGATGAATATTGGAAGAGTTTTTTGGGCCTGGGTTTTTGCTGAAGTTGTATCTAGCCGGGGCAGTTGGTGGCTCAGTCTTTTTCTTGGTCCACAAAGCCTTCCTAGCCGCGTCATCGCAGGGCCGAAAGCCATGGAACACGGAGGCGGCAAAGATACCAGGACTGGGGGCAAGTGGAGCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid

Protein Analysis

292

Amino Acids

32.97

Weight (kDa)

10.17

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
AccII CGCG 4 cut(s) 122, 168, 272, 801
AciI CCGC 5 cut(s) 148, 166, 253, 799, 837
AcsI RAATTY 2 cut(s) 279, 433
AcuI CTGAAG 2 cut(s) 215, 753
AfiI CCNNNNNNNGG 3 cut(s) 154, 157, 855
AflIII ACRYGT 1 cut(s) 615
AgsI TTSAA 2 cut(s) 357, 427
AjiI CACGTC 1 cut(s) 174
AjnI CCWGG 3 cut(s) 110, 719, 848
AjuI GAANNNNNNNTTGG 2 cut(s) 697, 729
AluBI AGCT 5 cut(s) 212, 353, 417, 558, 870
AluI AGCT 5 cut(s) 212, 353, 417, 558, 870
Alw26I GTCTC 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 3 cut(s) 114, 717, 812
ApeKI GCWGC 3 cut(s) 209, 259, 610
ApoI RAATTY 2 cut(s) 279, 433
AspLEI GCGC 4 cut(s) 97, 124, 170, 274
AspS9I GGNCC 4 cut(s) 114, 717, 779, 812
AsuC2I CCSGG 1 cut(s) 749
AsuHPI GGTGA 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 779
BanII GRGCYC 1 cut(s) 400
BbvI GCAGC 3 cut(s) 221, 271, 597
BccI CCATC 1 cut(s) 310
BceAI ACGGC 2 cut(s) 82, 623
BciT130I CCWGG 3 cut(s) 112, 721, 850
BcnI CCSGG 1 cut(s) 749
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 2 cut(s) 744, 795
BfmI CTRYAG 1 cut(s) 376
BfoI RGCGCY 1 cut(s) 98
BisI GCNGC 6 cut(s) 166, 210, 260, 611, 799, 838
BlsI GCNGC 6 cut(s) 167, 211, 261, 612, 800, 839
Bme1390I CCNGG 4 cut(s) 112, 721, 749, 850
Bme18I GGWCC 1 cut(s) 779
BmeT110I CYCGRG 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 174
BmgT120I GGNCC 4 cut(s) 114, 717, 779, 812
BmrFI CCNGG 4 cut(s) 112, 721, 749, 850
BmrI ACTGGG 2 cut(s) 660, 864
BmuI ACTGGG 2 cut(s) 660, 864
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 749
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 5 cut(s) 111, 248, 720, 748, 822
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 157, 855
Bse118I RCCGGY 2 cut(s) 58, 184
Bse1I ACTGG 3 cut(s) 87, 655, 859
BseBI CCWGG 3 cut(s) 112, 721, 850
BseDI CCNNGG 5 cut(s) 111, 248, 720, 748, 822
BseGI GGATG 2 cut(s) 244, 699
BseLI CCNNNNNNNGG 3 cut(s) 154, 157, 855
BseMII CTCAG 4 cut(s) 322, 338, 406, 778
BseNI ACTGG 3 cut(s) 87, 655, 859
BseRI GAGGAG 1 cut(s) 204
BseXI GCAGC 3 cut(s) 221, 271, 597
BsgI GTGCAG 1 cut(s) 596
Bsh1236I CGCG 4 cut(s) 122, 168, 272, 801
Bsh1285I CGRYCG 1 cut(s) 257
BshFI GGCC 3 cut(s) 116, 719, 814
BsiEI CGRYCG 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 3 cut(s) 59, 185, 748
BslI CCNNNNNNNGG 3 cut(s) 154, 157, 855
BsmAI GTCTC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 3 cut(s) 116, 719, 814
Bso31I GGTCTC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 2 cut(s) 550, 672
Bsp19I CCATGG 2 cut(s) 248, 822
BspACI CCGC 5 cut(s) 148, 166, 253, 799, 837
BspANI GGCC 3 cut(s) 116, 719, 814
BspCNI CTCAG 4 cut(s) 321, 339, 405, 777
BspFNI CGCG 4 cut(s) 122, 168, 272, 801
BspHI TCATGA 1 cut(s) 561
BspMAI CTGCAG 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 122
BsrFI RCCGGY 2 cut(s) 58, 184
BsrI ACTGG 3 cut(s) 87, 655, 859
BssAI RCCGGY 2 cut(s) 58, 184
BssECI CCNNGG 5 cut(s) 111, 248, 720, 748, 822
BssMI GATC 2 cut(s) 550, 672
BssT1I CCWWGG 2 cut(s) 248, 822
Bst2UI CCWGG 3 cut(s) 112, 721, 850
Bst4CI ACNGT 2 cut(s) 40, 137
Bst6I CTCTTC 1 cut(s) 700
BstDEI CTNAG 4 cut(s) 308, 347, 392, 764
BstDSI CCRYGG 2 cut(s) 248, 822
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 244, 699
BstFNI CGCG 4 cut(s) 122, 168, 272, 801
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 4 cut(s) 97, 124, 170, 274
BstKTI GATC 2 cut(s) 553, 675
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 2 cut(s) 550, 672
BstMCI CGRYCG 1 cut(s) 257
BstMWI GCNNNNNNNGC 5 cut(s) 176, 259, 521, 795, 867
BstNI CCWGG 3 cut(s) 112, 721, 850
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 4 cut(s) 110, 719, 747, 848
BstSFI CTRYAG 1 cut(s) 376
BstUI CGCG 4 cut(s) 122, 168, 272, 801
BstV1I GCAGC 3 cut(s) 221, 271, 597
BsuRI GGCC 3 cut(s) 116, 719, 814
BtgI CCRYGG 2 cut(s) 248, 822
BtgZI GCGATG 1 cut(s) 790
BtrI CACGTC 1 cut(s) 174
BtsCI GGATG 2 cut(s) 244, 699
CciI TCATGA 1 cut(s) 561
CfoI GCGC 4 cut(s) 97, 124, 170, 274
Cfr10I RCCGGY 2 cut(s) 58, 184
Cfr13I GGNCC 4 cut(s) 114, 717, 779, 812
CseI GACGC 3 cut(s) 40, 128, 790
CviAII CATG 7 cut(s) 206, 249, 284, 456, 562, 670, 823
DdeI CTNAG 4 cut(s) 308, 347, 392, 764
DpnI GATC 2 cut(s) 552, 674
DpnII GATC 2 cut(s) 550, 672
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 700
EarI CTCTTC 1 cut(s) 700
EciI GGCGGA 1 cut(s) 137
Eco130I CCWWGG 2 cut(s) 248, 822
Eco24I GRGCYC 1 cut(s) 400
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 779
Eco57I CTGAAG 2 cut(s) 215, 753
Eco88I CYCGRG 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoRII CCWGG 3 cut(s) 110, 719, 848
EcoT14I CCWWGG 2 cut(s) 248, 822
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 2 cut(s) 248, 822
FaeI CATG 7 cut(s) 209, 252, 287, 459, 565, 673, 826
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 7 cut(s) 205, 248, 283, 455, 561, 669, 822
Fnu4HI GCNGC 6 cut(s) 166, 210, 260, 611, 799, 838
FokI GGATG 2 cut(s) 231, 706
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 6 cut(s) 166, 210, 260, 611, 799, 838
FspBI CTAG 2 cut(s) 744, 795
GlaI GCGC 4 cut(s) 96, 123, 169, 273
GluI GCNGC 6 cut(s) 166, 210, 260, 611, 799, 838
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 3 cut(s) 116, 719, 814
HapII CCGG 3 cut(s) 59, 185, 748
HgaI GACGC 3 cut(s) 40, 128, 790
HhaI GCGC 4 cut(s) 97, 124, 170, 274
Hin1II CATG 7 cut(s) 209, 252, 287, 459, 565, 673, 826
Hin6I GCGC 4 cut(s) 95, 122, 168, 272
HinP1I GCGC 4 cut(s) 95, 122, 168, 272
HinfI GANTC 2 cut(s) 381, 387
HpaII CCGG 3 cut(s) 59, 185, 748
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 605, 782
Hpy188I TCNGA 7 cut(s) 311, 348, 373, 386, 395, 450, 677
Hpy188III TCNNGA 4 cut(s) 127, 334, 472, 562
Hpy8I GTNNAC 2 cut(s) 605, 782
Hpy99I CGWCG 2 cut(s) 23, 122
HpyAV CCTTC 2 cut(s) 353, 800
HpyCH4III ACNGT 2 cut(s) 40, 137
HpyCH4IV ACGT 3 cut(s) 21, 173, 617
HpyCH4V TGCA 5 cut(s) 209, 378, 548, 599, 613
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 259, 521, 795, 867
HpyF3I CTNAG 4 cut(s) 308, 347, 392, 764
HpySE526I ACGT 3 cut(s) 21, 173, 617
Hsp92II CATG 7 cut(s) 209, 252, 287, 459, 565, 673, 826
HspAI GCGC 4 cut(s) 95, 122, 168, 272
Kzo9I GATC 2 cut(s) 550, 672
LmnI GCTCC 3 cut(s) 217, 414, 867
Lsp1109I GCAGC 3 cut(s) 221, 271, 597
MaeI CTAG 2 cut(s) 744, 795
MaeII ACGT 3 cut(s) 21, 173, 617
MaeIII GTNAC 1 cut(s) 137
MalI GATC 2 cut(s) 552, 674
MboI GATC 2 cut(s) 550, 672
MboII GAAGA 2 cut(s) 184, 717
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 6 cut(s) 66, 279, 401, 433, 571, 592
MlyI GAGTC 1 cut(s) 390
MmeI TCCRAC 2 cut(s) 321, 364
MseI TTAA 3 cut(s) 65, 420, 874
MspI CCGG 3 cut(s) 59, 185, 748
MspR9I CCNGG 4 cut(s) 112, 721, 749, 850
Mva1269I GAATGC 1 cut(s) 632
MvaI CCWGG 3 cut(s) 112, 721, 850
MvnI CGCG 4 cut(s) 122, 168, 272, 801
MwoI GCNNNNNNNGC 5 cut(s) 176, 259, 521, 795, 867
NciI CCSGG 1 cut(s) 749
NcoI CCATGG 2 cut(s) 248, 822
NdeII GATC 2 cut(s) 550, 672
NlaIII CATG 7 cut(s) 209, 252, 287, 459, 565, 673, 826
NmeAIII GCCGAG 2 cut(s) 198, 205
NspI RCATGY 1 cut(s) 209
PaeR7I CTCGAG 1 cut(s) 125
PagI TCATGA 1 cut(s) 561
PctI GAATGC 1 cut(s) 632
PfeI GAWTC 1 cut(s) 387
PkrI GCNGC 6 cut(s) 167, 211, 261, 612, 800, 839
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
Psp6I CCWGG 3 cut(s) 110, 719, 848
PspGI CCWGG 3 cut(s) 110, 719, 848
PspPI GGNCC 4 cut(s) 114, 717, 779, 812
PstI CTGCAG 1 cut(s) 380
SaqAI TTAA 3 cut(s) 65, 420, 874
SatI GCNGC 6 cut(s) 166, 210, 260, 611, 799, 838
Sau3AI GATC 2 cut(s) 550, 672
Sau96I GGNCC 4 cut(s) 114, 717, 779, 812
SchI GAGTC 1 cut(s) 390
ScrFI CCNGG 4 cut(s) 112, 721, 749, 850
SduI GDGCHC 1 cut(s) 400
SfcI CTRYAG 1 cut(s) 376
Sfr274I CTCGAG 1 cut(s) 125
SinI GGWCC 1 cut(s) 779
SlaI CTCGAG 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 53, 125
SmoI CTYRAG 2 cut(s) 53, 125
Sse9I AATT 6 cut(s) 66, 279, 401, 433, 571, 592
SsiI CCGC 5 cut(s) 148, 166, 253, 799, 837
SspI AATATT 1 cut(s) 700
SspMI CTAG 2 cut(s) 744, 795
StyD4I CCNGG 4 cut(s) 110, 719, 747, 848
StyI CCWWGG 2 cut(s) 248, 822
TaaI ACNGT 2 cut(s) 40, 137
TaiI ACGT 3 cut(s) 24, 176, 620
TaqI TCGA 3 cut(s) 126, 335, 482
TaqII GACCGA 1 cut(s) 146
TasI AATT 6 cut(s) 66, 279, 401, 433, 571, 592
TauI GCSGC 3 cut(s) 168, 801, 840
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 3 cut(s) 65, 420, 874
Tru9I TTAA 3 cut(s) 65, 420, 874
TseI GCWGC 3 cut(s) 209, 259, 610
TspDTI ATGAA 8 cut(s) 17, 272, 444, 504, 550, 573, 581, 710
TspGWI ACGGA 3 cut(s) 60, 427, 846
VpaK11BI GGWCC 1 cut(s) 779
XagI CCTNNNNNAGG 1 cut(s) 155
XapI RAATTY 2 cut(s) 279, 433
XceI RCATGY 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 125
XspI CTAG 2 cut(s) 744, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.