AT1G24380

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001696
Physical Location & Seq
Forward (+)
8646056 .. 8647674
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G24380.1

Sequence Viewer

Length: 882 bp
ATGTGTATCTCGATGTTTCCCAAAATTCAACGAAGACCAAAAAGATCTTTACAAACTCGAATGACGTCAATTCTTTCTGCAGTCTCAAAGCTGAGAGGATGCGTTAACCAAATTGAGAATAAAAATCCTAGCGGTGCTTCTGAAGAAGACATTTTAAACCAAGCGAAGATGTTATTAACTCAATATGAAAAATACAAGAGAGGATTCAAATTTGATCATGTATGGCCTATTCTTAAAGGTATTGAGAAATTTGCTAATGATAACATGAAGACACCCGCTGCATTCCAAGGAGAAGGTCGTGATGTTACGTCATCTTCATCATTTTCAATCAATACCGAGTCATCACCTTCCCCTGGTATGAATTCAATTGATCTAAATATGGATAGTGAAGATGCCAATTTTAGTTTATCTTCAAGGCCTATGGGTTTGAAAAAAGCAAAGCGAAAACAACAATCTGAAGAACAGTTTAAACAACTTTTGGAGCAAAATGATAAACTTATCAAAGCTATTACTAAAGGTACTTCTGAAAGAAATGAAATTCAAAGGCAGAAGATCGAGGTAGCTAGAATGAAAGAAGAGAATAAAATATTATTTGCAGATTTGAATTCTATAAGTGATCCATCCTCTAGTGCATATATTGAAAATGAGAGAAAAAGAATTTTGGAAAAAAGAGCACAAACAAACCAACATGAAGAAGATGGTGAAGGCTCCCAATATCATGGATCTCAATATCGAGCATCTCATTATCAAGAAAGTCCATTTCATGGAAAACAAGTTCAAGGAGAACCGGATCAAGGTGAAGACCAAAGATCACCAAATAACCAAGAAGATTTTACCCAATATTATAATTATCTTAGCGGAACCGGAAATAATTTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

293

Amino Acids

33.47

Weight (kDa)

8.33

Isoelectric Point (pI)

62.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 67 - 220 4e-30 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 846
AatII GACGTC 1 cut(s) 68
AccB7I CCANNNNNTGG 1 cut(s) 764
AciI CCGC 3 cut(s) 132, 276, 858
AclWI GGATC 3 cut(s) 611, 730, 798
AcsI RAATTY 7 cut(s) 24, 209, 248, 361, 537, 604, 657
AcuI CTGAAG 2 cut(s) 162, 477
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 1 cut(s) 520
AfiI CCNNNNNNNGG 3 cut(s) 353, 764, 794
AjnI CCWGG 1 cut(s) 352
AloI GAACNNNNNNTCC 2 cut(s) 759, 791
AluBI AGCT 3 cut(s) 91, 506, 563
AluI AGCT 3 cut(s) 91, 506, 563
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 3 cut(s) 611, 730, 798
AoxI GGCC 2 cut(s) 224, 416
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 7 cut(s) 24, 209, 248, 361, 537, 604, 657
AsuHPI GGTGA 4 cut(s) 336, 713, 804, 809
BbsI GAAGAC 4 cut(s) 40, 153, 275, 807
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 1 cut(s) 265
BccI CCATC 2 cut(s) 628, 692
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 3 cut(s) 129, 564, 627
BfmI CTRYAG 1 cut(s) 78
BglII AGATCT 1 cut(s) 44
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 354
BmiI GGNNCC 2 cut(s) 709, 862
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 3 cut(s) 89, 382, 746
BpiI GAAGAC 4 cut(s) 40, 153, 275, 807
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 286, 352
BsaWI WCCGGW 2 cut(s) 787, 863
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 764, 794
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 286, 352
BseGI GGATG 2 cut(s) 104, 620
BseLI CCNNNNNNNGG 3 cut(s) 353, 764, 794
BseMII CTCAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 265
BshFI GGCC 2 cut(s) 226, 418
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 2 cut(s) 788, 864
BslI CCNNNNNNNGG 3 cut(s) 353, 764, 794
BsmAI GTCTC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 2 cut(s) 226, 418
Bsp1286I GDGCHC 1 cut(s) 676
Bsp143I GATC 8 cut(s) 44, 214, 370, 552, 616, 722, 790, 809
BspACI CCGC 3 cut(s) 132, 276, 858
BspANI GGCC 2 cut(s) 226, 418
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 709, 862
BspMAI CTGCAG 1 cut(s) 82
BspPI GGATC 3 cut(s) 611, 730, 798
BssECI CCNNGG 2 cut(s) 286, 352
BssMI GATC 8 cut(s) 44, 214, 370, 552, 616, 722, 790, 809
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 465
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 92, 854
BstF5I GGATG 2 cut(s) 104, 620
BstKTI GATC 8 cut(s) 47, 217, 373, 555, 619, 725, 793, 812
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 8 cut(s) 44, 214, 370, 552, 616, 722, 790, 809
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 4 cut(s) 40, 153, 275, 807
BstX2I RGATCY 2 cut(s) 44, 722
BstXI CCANNNNNNTGG 1 cut(s) 719
BstYI RGATCY 2 cut(s) 44, 722
BsuRI GGCC 2 cut(s) 226, 418
BtsCI GGATG 2 cut(s) 104, 620
Csp6I GTAC 1 cut(s) 519
CviAII CATG 5 cut(s) 218, 265, 689, 719, 764
CviJI RGCY 6 cut(s) 91, 226, 418, 506, 563, 708
CviKI_1 RGCY 6 cut(s) 91, 226, 418, 506, 563, 708
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 2 cut(s) 92, 854
DpnI GATC 8 cut(s) 46, 216, 372, 554, 618, 724, 792, 811
DpnII GATC 8 cut(s) 44, 214, 370, 552, 616, 722, 790, 809
DraI TTTAAA 2 cut(s) 156, 469
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco130I CCWWGG 1 cut(s) 286
Eco147I AGGCCT 1 cut(s) 418
Eco57I CTGAAG 2 cut(s) 162, 477
EcoRI GAATTC 2 cut(s) 361, 604
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 5 cut(s) 221, 268, 692, 722, 767
FatI CATG 5 cut(s) 217, 264, 688, 718, 763
FauI CCCGC 1 cut(s) 283
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 2 cut(s) 111, 607
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 3 cut(s) 129, 564, 627
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 2 cut(s) 226, 418
HapII CCGG 2 cut(s) 788, 864
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 5 cut(s) 221, 268, 692, 722, 767
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 2 cut(s) 204, 338
HpaI GTTAAC 1 cut(s) 106
HpaII CCGG 2 cut(s) 788, 864
HphI GGTGA 4 cut(s) 336, 713, 804, 809
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 142, 457, 526
Hpy188III TCNNGA 3 cut(s) 10, 299, 749
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 3 cut(s) 287, 357, 698
HpyCH4III ACNGT 1 cut(s) 465
HpyCH4IV ACGT 2 cut(s) 65, 308
HpyCH4V TGCA 4 cut(s) 80, 281, 596, 632
HpyF3I CTNAG 2 cut(s) 92, 854
HpySE526I ACGT 2 cut(s) 65, 308
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 5 cut(s) 221, 268, 692, 722, 767
Ksp22I TGATCA 1 cut(s) 214
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 8 cut(s) 44, 214, 370, 552, 616, 722, 790, 809
LmnI GCTCC 2 cut(s) 481, 713
LpnPI CCDG 4 cut(s) 339, 366, 801, 877
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 3 cut(s) 89, 382, 746
MaeI CTAG 3 cut(s) 129, 564, 627
MaeII ACGT 2 cut(s) 65, 308
MaeIII GTNAC 1 cut(s) 304
MalI GATC 8 cut(s) 46, 216, 372, 554, 618, 724, 792, 811
MboI GATC 8 cut(s) 44, 214, 370, 552, 616, 722, 790, 809
MfeI CAATTG 1 cut(s) 366
MflI RGATCY 2 cut(s) 44, 722
MhlI GDGCHC 1 cut(s) 676
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 4 cut(s) 89, 194, 550, 634
MseI TTAA 6 cut(s) 105, 155, 176, 234, 468, 880
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 2 cut(s) 788, 864
MspR9I CCNGG 1 cut(s) 354
MssI GTTTAAAC 1 cut(s) 469
MunI CAATTG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 1 cut(s) 354
NdeII GATC 8 cut(s) 44, 214, 370, 552, 616, 722, 790, 809
NlaIII CATG 5 cut(s) 221, 268, 692, 722, 767
NlaIV GGNNCC 2 cut(s) 709, 862
PceI AGGCCT 1 cut(s) 418
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 764
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 346
PmeI GTTTAAAC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 346
PsiI TTATAA 1 cut(s) 846
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 709, 862
PstI CTGCAG 1 cut(s) 82
PsuI RGATCY 2 cut(s) 44, 722
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
SaqAI TTAA 6 cut(s) 105, 155, 176, 234, 468, 880
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 8 cut(s) 44, 214, 370, 552, 616, 722, 790, 809
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 676
SfaNI GCATC 3 cut(s) 89, 382, 746
SfcI CTRYAG 1 cut(s) 78
SseBI AGGCCT 1 cut(s) 418
SsiI CCGC 3 cut(s) 132, 276, 858
SspI AATATT 2 cut(s) 588, 842
SspMI CTAG 3 cut(s) 129, 564, 627
StuI AGGCCT 1 cut(s) 418
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 465
TaiI ACGT 2 cut(s) 68, 311
TaqI TCGA 4 cut(s) 11, 58, 555, 733
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 6 cut(s) 105, 155, 176, 234, 468, 880
Tru9I TTAA 6 cut(s) 105, 155, 176, 234, 468, 880
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 8 cut(s) 201, 281, 306, 374, 549, 584, 705, 752
Van91I CCANNNNNTGG 1 cut(s) 764
XapI RAATTY 7 cut(s) 24, 209, 248, 361, 537, 604, 657
XspI CTAG 3 cut(s) 129, 564, 627
ZraI GACGTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.