Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Reverse (-)

5734955 .. 5735805

Gene Structure 851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G13760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTTATTAACTCAATATGAAAAATACAAGAGAGGATTCAAATTTGATCATGTATGGCCTATTCTTAAAGGTATTGAGAAATTTGCTAATGATAACATGATGACACCCGCTTCATCACCTTCCCCTGGTATGAATTCAATTGATCTAAATATGGATAGTGAAGATGCCAATTTTAGTTTATCTTCAAGACCTATGGGTTTAAAAAAAACAAAGCTAAAACAACTTTTGGAGCAAAATGATAAACTTATCAAAGCTATTACTAAAGGTACTTCTGAAAGAAATGAAATTCAAAGGCAGAAGATCGAGGTAGATAGAATGAAAGAAGAGAATAAAATATTATTTGCAGATTTGAATTCTATAAGTGATCCATCCTCTCGTGCATATATTGAAAATGAGAGAAAAAGAATTTTGGAAAAAAGAGCACAAACAAACCAACATGAAGAAGATGGTGAAGGCTCTCAATATCATGGATCTCAATATCGAGCATCTCATTATCAAGAAAGTCCATCTCATGGAAAACAAGTTCAAGGAGAACCGGATCAAGGTGAAGACCAAAGATCACCAAATAACCAAGAAGATTTTACCCAATATTATAATTATCTTAGCGGAACCGAAAATATTTTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

209

Amino Acids

24.19

Weight (kDa)

5.81

Isoelectric Point (pI)

55.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	11 - 136	6.6e-17	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	594
AccB7I	CCANNNNNTGG	1 cut(s)	512
AciI	CCGC	2 cut(s)	108, 606
AclWI	GGATC	3 cut(s)	359, 478, 546
AcsI	RAATTY	6 cut(s)	41, 80, 133, 285, 352, 405
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	3 cut(s)	125, 512, 542
AgsI	TTSAA	7 cut(s)	40, 138, 186, 290, 352, 389, 527
AjnI	CCWGG	1 cut(s)	124
AloI	GAACNNNNNNTCC	2 cut(s)	507, 539
AluBI	AGCT	2 cut(s)	214, 254
AluI	AGCT	2 cut(s)	214, 254
Alw21I	GWGCWC	1 cut(s)	424
AlwI	GGATC	3 cut(s)	359, 478, 546
AoxI	GGCC	1 cut(s)	56
ApoI	RAATTY	6 cut(s)	41, 80, 133, 285, 352, 405
AsuHPI	GGTGA	4 cut(s)	108, 461, 552, 557
BauI	CACGAG	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	424
BccI	CCATC	3 cut(s)	376, 440, 514
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	2 cut(s)	154, 494
BpiI	GAAGAC	1 cut(s)	555
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 512, 542
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	3 cut(s)	125, 512, 542
BshFI	GGCC	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	536
BslI	CCNNNNNNNGG	3 cut(s)	125, 512, 542
BsnI	GGCC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	7 cut(s)	46, 142, 300, 364, 470, 538, 557
BspACI	CCGC	2 cut(s)	108, 606
BspANI	GGCC	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	610
BspPI	GGATC	3 cut(s)	359, 478, 546
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	7 cut(s)	46, 142, 300, 364, 470, 538, 557
BssSI	CACGAG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	602
BstF5I	GGATG	1 cut(s)	368
BstKTI	GATC	7 cut(s)	49, 145, 303, 367, 473, 541, 560
BstMBI	GATC	7 cut(s)	46, 142, 300, 364, 470, 538, 557
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BsuRI	GGCC	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	5 cut(s)	50, 97, 437, 467, 512
CviJI	RGCY	4 cut(s)	58, 214, 254, 456
CviKI_1	RGCY	4 cut(s)	58, 214, 254, 456
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	602
DpnI	GATC	7 cut(s)	48, 144, 302, 366, 472, 540, 559
DpnII	GATC	7 cut(s)	46, 142, 300, 364, 470, 538, 557
DraI	TTTAAA	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
EcoRI	GAATTC	2 cut(s)	133, 352
EcoRII	CCWGG	1 cut(s)	124
FaeI	CATG	5 cut(s)	53, 100, 440, 470, 515
FatI	CATG	5 cut(s)	49, 96, 436, 466, 511
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	46
FokI	GGATG	1 cut(s)	355
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	1 cut(s)	536
Hin1II	CATG	5 cut(s)	53, 100, 440, 470, 515
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	4 cut(s)	108, 461, 552, 557
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	2 cut(s)	186, 497
HpyAV	CCTTC	2 cut(s)	129, 446
HpyCH4V	TGCA	2 cut(s)	344, 380
HpyF3I	CTNAG	1 cut(s)	602
Hsp92II	CATG	5 cut(s)	53, 100, 440, 470, 515
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	7 cut(s)	46, 142, 300, 364, 470, 538, 557
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	3 cut(s)	111, 138, 549
LweI	GCATC	2 cut(s)	154, 494
MalI	GATC	7 cut(s)	48, 144, 302, 366, 472, 540, 559
MboI	GATC	7 cut(s)	46, 142, 300, 364, 470, 538, 557
MboII	GAAGA	8 cut(s)	173, 174, 310, 335, 452, 455, 560, 587
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	9 cut(s)	41, 80, 133, 138, 169, 285, 352, 405, 595
MnlI	CCTC	3 cut(s)	26, 298, 382
MseI	TTAA	4 cut(s)	8, 66, 200, 628
MspI	CCGG	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	126
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	126
NdeII	GATC	7 cut(s)	46, 142, 300, 364, 470, 538, 557
NlaIII	CATG	5 cut(s)	53, 100, 440, 470, 515
NlaIV	GGNNCC	1 cut(s)	610
PfeI	GAWTC	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	512
PsiI	TTATAA	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	610
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SaqAI	TTAA	4 cut(s)	8, 66, 200, 628
Sau3AI	GATC	7 cut(s)	46, 142, 300, 364, 470, 538, 557
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	8 cut(s)	73, 121, 193, 216, 256, 268, 309, 547
SfaNI	GCATC	2 cut(s)	154, 494
Sse9I	AATT	9 cut(s)	41, 80, 133, 138, 169, 285, 352, 405, 595
SsiI	CCGC	2 cut(s)	108, 606
SspI	AATATT	3 cut(s)	336, 590, 619
StyD4I	CCNGG	1 cut(s)	124
TaqI	TCGA	2 cut(s)	303, 481
TasI	AATT	9 cut(s)	41, 80, 133, 138, 169, 285, 352, 405, 595
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	4 cut(s)	8, 66, 200, 628
Tru9I	TTAA	4 cut(s)	8, 66, 200, 628
TspDTI	ATGAA	6 cut(s)	33, 102, 146, 297, 332, 453
Van91I	CCANNNNNTGG	1 cut(s)	512
XapI	RAATTY	6 cut(s)	41, 80, 133, 285, 352, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.