Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Reverse (-)

22559295 .. 22559786

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCTTTTACTGTTAAGCACGAGCAATTCATCTCAAAAATTAGCTATTCAGCGTGAACGTGAGGAAAACAAAATCATGCTTACTAGTTTGGATACAATTACCGATCCAGAAGGGCGTGAGTACTTACGATCGAGAAAAGCAGAGATAATGGAGAGAAGAGCTCGTCAGTCTCGACAACTACCTGCAGCATCTGACTTTGGTAATTTCAATAACATAAACCAATTTCAAGGTGGTTCACAAGGATCTTTCAACTCTGGTAACTTTGCTAGCCCATTTCAATTTCGAACTACATTTGGTGGATATGGGAATCACCATGGAGGAGCAGCTGGATATGGTGGAGTCCCTCATTATGGAGGAAGTGATGGATCGGGAACAAGTGATGCACATGGAGGAGCGCGACAATTCAGAGATAGCGGTGGATCTGAGACACCTAGCGGATATGGACTCATGCCAGAACATGGAAGAGATGATGATGATCTGACGAATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

164

Amino Acids

17.66

Weight (kDa)

5.93

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AccB7I	CCANNNNNTGG	1 cut(s)	458
AccII	CGCG	1 cut(s)	397
AciI	CCGC	2 cut(s)	414, 435
AclWI	GGATC	4 cut(s)	98, 250, 373, 427
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	350, 458
AgsI	TTSAA	4 cut(s)	208, 227, 250, 278
AhlI	ACTAGT	1 cut(s)	83
AluBI	AGCT	3 cut(s)	44, 161, 326
AluI	AGCT	3 cut(s)	44, 161, 326
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	2 cut(s)	174, 419
AlwI	GGATC	4 cut(s)	98, 250, 373, 427
AlwNI	CAGNNNCTG	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	185, 323
AspLEI	GCGC	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	302
AsuII	TTCGAA	1 cut(s)	283
AsuNHI	GCTAGC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	163
BauI	CACGAG	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	197, 335
BccI	CCATC	1 cut(s)	356
BciVI	GTATCC	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	174, 419
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	3 cut(s)	84, 267, 432
BfmI	CTRYAG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	186, 324
BlsI	GCNGC	2 cut(s)	187, 325
BmcAI	AGTACT	1 cut(s)	122
BmsI	GCATC	2 cut(s)	197, 370
BmtI	GCTAGC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
Bpu14I	TTCGAA	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 458
Bse8I	GATNNNNATC	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	313
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	350, 458
BseMII	CTCAG	1 cut(s)	414
BseRI	GAGGAG	2 cut(s)	333, 405
BseXI	GCAGC	2 cut(s)	197, 335
Bsh1236I	CGCG	1 cut(s)	397
Bsh1285I	CGRYCG	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	350, 458
BsmAI	GTCTC	2 cut(s)	174, 419
BsmFI	GGGAC	1 cut(s)	326
Bsp119I	TTCGAA	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	6 cut(s)	103, 128, 242, 365, 419, 475
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	2 cut(s)	414, 435
BspCNI	CTCAG	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	397
BspMAI	CTGCAG	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	190
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	4 cut(s)	98, 250, 373, 427
BspQI	GCTCTTC	1 cut(s)	151
BspT104I	TTCGAA	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	6 cut(s)	103, 128, 242, 365, 419, 475
BssSI	CACGAG	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	313
Bst2BI	CACGAG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	12
Bst6I	CTCTTC	2 cut(s)	151, 457
BstBI	TTCGAA	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	423
BstDSI	CCRYGG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	6 cut(s)	106, 131, 245, 368, 422, 478
BstMAI	GTCTC	2 cut(s)	174, 419
BstMBI	GATC	6 cut(s)	103, 128, 242, 365, 419, 475
BstMCI	CGRYCG	1 cut(s)	131
BstSFI	CTRYAG	1 cut(s)	183
BstUI	CGCG	1 cut(s)	397
BstV1I	GCAGC	2 cut(s)	197, 335
BstX2I	RGATCY	2 cut(s)	242, 419
BstYI	RGATCY	2 cut(s)	242, 419
BsuI	GTATCC	1 cut(s)	85
BtgI	CCRYGG	1 cut(s)	313
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	268
CaiI	CAGNNNCTG	1 cut(s)	191
CfoI	GCGC	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	5 cut(s)	76, 314, 386, 448, 458
CviJI	RGCY	4 cut(s)	44, 161, 270, 326
CviKI_1	RGCY	4 cut(s)	44, 161, 270, 326
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	6 cut(s)	105, 130, 244, 367, 421, 477
DpnII	GATC	6 cut(s)	103, 128, 242, 365, 419, 475
Eam1104I	CTCTTC	2 cut(s)	151, 457
EarI	CTCTTC	2 cut(s)	151, 457
Ecl136II	GAGCTC	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	5 cut(s)	79, 317, 389, 451, 461
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	5 cut(s)	75, 313, 385, 447, 457
Fnu4HI	GCNGC	2 cut(s)	186, 324
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	2 cut(s)	186, 324
FspBI	CTAG	3 cut(s)	84, 267, 432
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	2 cut(s)	186, 324
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	5 cut(s)	79, 317, 389, 451, 461
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HinfI	GANTC	3 cut(s)	307, 339, 444
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	2 cut(s)	56, 236
Hpy188I	TCNGA	4 cut(s)	193, 407, 424, 480
Hpy188III	TCNNGA	4 cut(s)	107, 132, 171, 369
Hpy8I	GTNNAC	2 cut(s)	56, 236
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	185, 383
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	5 cut(s)	79, 317, 389, 451, 461
HspAI	GCGC	1 cut(s)	395
Kzo9I	GATC	6 cut(s)	103, 128, 242, 365, 419, 475
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	320, 392
LpnPI	CCDG	5 cut(s)	120, 195, 240, 312, 465
Lsp1109I	GCAGC	2 cut(s)	197, 335
LweI	GCATC	2 cut(s)	197, 370
MaeI	CTAG	3 cut(s)	84, 267, 432
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	6 cut(s)	105, 130, 244, 367, 421, 477
MboI	GATC	6 cut(s)	103, 128, 242, 365, 419, 475
MboII	GAAGA	2 cut(s)	168, 474
MflI	RGATCY	2 cut(s)	242, 419
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	8 cut(s)	25, 38, 96, 202, 221, 278, 401, 484
MlyI	GAGTC	2 cut(s)	348, 438
MnlI	CCTC	5 cut(s)	55, 311, 347, 354, 383
MseI	TTAA	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	397
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	6 cut(s)	103, 128, 242, 365, 419, 475
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	5 cut(s)	79, 317, 389, 451, 461
NspV	TTCGAA	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	307
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	2 cut(s)	187, 325
Ple19I	CGATCG	1 cut(s)	131
PleI	GAGTC	2 cut(s)	347, 438
PpsI	GAGTC	2 cut(s)	347, 438
Psp124BI	GAGCTC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	2 cut(s)	242, 419
PvuI	CGATCG	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	2 cut(s)	186, 324
Sau3AI	GATC	6 cut(s)	103, 128, 242, 365, 419, 475
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	2 cut(s)	348, 438
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	7 cut(s)	46, 61, 163, 184, 232, 328, 433
SfaNI	GCATC	2 cut(s)	197, 370
SfcI	CTRYAG	1 cut(s)	183
SfuI	TTCGAA	1 cut(s)	283
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	8 cut(s)	25, 38, 96, 202, 221, 278, 401, 484
SsiI	CCGC	2 cut(s)	414, 435
SspMI	CTAG	3 cut(s)	84, 267, 432
SstI	GAGCTC	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	3 cut(s)	131, 172, 283
TasI	AATT	8 cut(s)	25, 38, 96, 202, 221, 278, 401, 484
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseI	GCWGC	2 cut(s)	185, 323
TspDTI	ATGAA	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XspI	CTAG	3 cut(s)	84, 267, 432
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.