Rh5CG341400

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001696
Physical Location & Seq
Reverse (-)
39128407 .. 39129979
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG341400.1

Sequence Viewer

Length: 1077 bp
ATGTCTTCTTCTAAGCGTGGATTGAATTTTACCGTAGAAGAAGATCTACAATTGTGCCATGTTTATCTTGATATTTCTCAATGTCCAATTAATGGTATTAACCAGAAAAAGGATGCACTATGGGAGAGGATTGCTGCTATCTACAATGAAGGCAAGTCTGAGGAAAGGAGTCGATCTGGTGGGTCGCTTCAAAGTCAATTTTCTGATCTATGCTTACCGGTCAGTAAACTTCGTGGTCATATTCGACAAATTGAGTACCAAAATCCAAGTGGTGCATCAGAGTCCTATATTTTCAAGAAAGCTAAGGAATCTCTCCTAGATGATTCAACTTATAAGAAGAAAAAGTTTCAATTTGACCATGTGTGGCCCATTCTAAAAAATGCTGAGAAATGGCTTGATAATGCTGCCATGACCGCTCCTAAACCTCGTAGAAGGAAGGAGTCATCTGAAGGATCTCAATCAGGTTCTCGCACATCAAGGACATCTGATACTCCATCGTTTTCTGTTGATTTAAATGCAGATGAAGATGAGGAAGAGTACATCAACGATGAAGTTGCTTCACATGATCGTCCCATGGGAACGAGGATGGCAAAGATGAAAAGGAAAGCCACTGATGAGAAGAAAAAGAATTATGATAAGATCATGGTCGATAACCAAGCAATAAAAGAGTTACTTGAAAAAAGTATGCTGGAGAGATCAAGCTTCGCTTCCAAGTTTGACCATTACACGTCAAGCAAATTGGATATTCAACGTCAGCGCGAAGAGATGAGGAAGGCAGAAGTTATGCAAAGAAGAGCTCGTGAGTCTCAATCACAAGGATCACCACCTACTACATTTGGCTATGGTAACTTTAGTAACCTTAACCAGTTTCAAAGTGGTTCTGAAGCTACATTTCATTCTGGAAATTTTGGTAGTCCTTTACAATTTTCAAGTGGATTCGGAGGAAGTGGTGGGAGTGGAGGAGTACCACATGCTGGAGGAAGTAGCAGTGGAGGAATGCCTGAGTACAATGAAAGTAGTGGATTCGGAACAAGCGATGGTTATGGAGGAAGTGATGCTAATCTACCGGAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

358

Amino Acids

39.85

Weight (kDa)

6.69

Isoelectric Point (pI)

61.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 114 - 255 4.9e-12 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AccB7I CCANNNNNTGG 2 cut(s) 92, 974
AccBSI CCGCTC 1 cut(s) 416
AccII CGCG 1 cut(s) 759
AciI CCGC 1 cut(s) 414
AclWI GGATC 2 cut(s) 460, 826
AcsI RAATTY 2 cut(s) 25, 904
AcuI CTGAAG 2 cut(s) 468, 903
AfaI GTAC 4 cut(s) 257, 539, 966, 1007
AfiI CCNNNNNNNGG 3 cut(s) 92, 109, 974
AflIII ACRYGT 1 cut(s) 726
AgeI ACCGGT 1 cut(s) 217
AgsI TTSAA 9 cut(s) 25, 191, 295, 327, 350, 677, 749, 872, 930
AjiI CACGTC 1 cut(s) 729
AluBI AGCT 4 cut(s) 302, 702, 797, 887
AluI AGCT 4 cut(s) 302, 702, 797, 887
Alw21I GWGCWC 1 cut(s) 799
Alw26I GTCTC 1 cut(s) 810
AlwI GGATC 2 cut(s) 460, 826
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 134, 404
ApoI RAATTY 2 cut(s) 25, 904
AseI ATTAAT 1 cut(s) 90
AsiGI ACCGGT 1 cut(s) 217
AspLEI GCGC 1 cut(s) 759
AspS9I GGNCC 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 813
BanII GRGCYC 1 cut(s) 799
BarI GAAGNNNNNNTAC 2 cut(s) 30, 62
BauI CACGAG 1 cut(s) 798
Bbv12I GWGCWC 1 cut(s) 799
BbvI GCAGC 2 cut(s) 121, 391
BccI CCATC 3 cut(s) 502, 580, 1031
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BcoDI GTCTC 1 cut(s) 810
BfaI CTAG 2 cut(s) 317, 1075
BglII AGATCT 1 cut(s) 43
BisI GCNGC 2 cut(s) 135, 405
BlsI GCNGC 2 cut(s) 136, 406
BmgBI CACGTC 1 cut(s) 729
BmgT120I GGNCC 1 cut(s) 366
BmsI GCATC 3 cut(s) 103, 284, 1045
BpmI CTGGAG 2 cut(s) 710, 996
Bpu10I CCTNAGC 1 cut(s) 303
BsaBI GATNNNNATC 2 cut(s) 457, 1059
BsaJI CCNNGG 1 cut(s) 573
BsaWI WCCGGW 2 cut(s) 217, 1066
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 109, 974
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 865
Bse8I GATNNNNATC 2 cut(s) 457, 1059
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 2 cut(s) 118, 591
BseJI GATNNNNATC 2 cut(s) 457, 1059
BseLI CCNNNNNNNGG 3 cut(s) 92, 109, 974
BseMII CTCAG 3 cut(s) 150, 375, 993
BseNI ACTGG 1 cut(s) 865
BseRI GAGGAG 1 cut(s) 975
BseXI GCAGC 2 cut(s) 121, 391
Bsh1236I CGCG 1 cut(s) 759
BshFI GGCC 1 cut(s) 367
BshTI ACCGGT 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 799
BsiSI CCGG 2 cut(s) 218, 1067
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 3 cut(s) 92, 109, 974
BsmAI GTCTC 1 cut(s) 810
BsmFI GGGAC 1 cut(s) 555
BsmI GAATGC 1 cut(s) 1002
BsnI GGCC 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 799
Bsp143I GATC 8 cut(s) 43, 173, 205, 452, 565, 639, 695, 818
Bsp19I CCATGG 1 cut(s) 573
BspACI CCGC 1 cut(s) 414
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 3 cut(s) 151, 376, 994
BspFNI CGCG 1 cut(s) 759
BspPI GGATC 2 cut(s) 460, 826
BspQI GCTCTTC 1 cut(s) 787
BsrBI CCGCTC 1 cut(s) 416
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 1 cut(s) 865
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 573
BssMI GATC 8 cut(s) 43, 173, 205, 452, 565, 639, 695, 818
BssSI CACGAG 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 573
Bst2BI CACGAG 1 cut(s) 798
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 3 cut(s) 528, 756, 787
BstDEI CTNAG 5 cut(s) 12, 159, 303, 384, 1002
BstDSI CCRYGG 1 cut(s) 573
BstF5I GGATG 2 cut(s) 118, 591
BstFNI CGCG 1 cut(s) 759
BstHHI GCGC 1 cut(s) 759
BstKTI GATC 8 cut(s) 46, 176, 208, 455, 568, 642, 698, 821
BstMAI GTCTC 1 cut(s) 810
BstMBI GATC 8 cut(s) 43, 173, 205, 452, 565, 639, 695, 818
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 974
BstUI CGCG 1 cut(s) 759
BstV1I GCAGC 2 cut(s) 121, 391
BstX2I RGATCY 2 cut(s) 43, 452
BstYI RGATCY 2 cut(s) 43, 452
BsuRI GGCC 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 573
BtgZI GCGATG 1 cut(s) 1050
BtrI CACGTC 1 cut(s) 729
BtsCI GGATG 2 cut(s) 118, 591
BtsI GCAGTG 1 cut(s) 994
BtsIMutI CAGTG 2 cut(s) 609, 994
CfoI GCGC 1 cut(s) 759
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 366
Csp6I GTAC 4 cut(s) 256, 538, 965, 1006
CspAI ACCGGT 1 cut(s) 217
CviAII CATG 7 cut(s) 59, 359, 409, 563, 574, 643, 971
CviJI RGCY 8 cut(s) 302, 367, 394, 608, 702, 797, 840, 887
CviKI_1 RGCY 8 cut(s) 302, 367, 394, 608, 702, 797, 840, 887
CviQI GTAC 4 cut(s) 256, 538, 965, 1006
DdeI CTNAG 5 cut(s) 12, 159, 303, 384, 1002
DpnI GATC 8 cut(s) 45, 175, 207, 454, 567, 641, 697, 820
DpnII GATC 8 cut(s) 43, 173, 205, 452, 565, 639, 695, 818
DraI TTTAAA 1 cut(s) 513
Eam1104I CTCTTC 3 cut(s) 528, 756, 787
EarI CTCTTC 3 cut(s) 528, 756, 787
Ecl136II GAGCTC 1 cut(s) 797
Eco130I CCWWGG 1 cut(s) 573
Eco24I GRGCYC 1 cut(s) 799
Eco53kI GAGCTC 1 cut(s) 797
Eco57I CTGAAG 2 cut(s) 468, 903
EcoICRI GAGCTC 1 cut(s) 797
EcoT14I CCWWGG 1 cut(s) 573
EcoT38I GRGCYC 1 cut(s) 799
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 7 cut(s) 62, 362, 412, 566, 577, 646, 974
FalI AAGNNNNNCTT 4 cut(s) 657, 689, 691, 723
FaqI GGGAC 1 cut(s) 555
FatI CATG 7 cut(s) 58, 358, 408, 562, 573, 642, 970
Fnu4HI GCNGC 2 cut(s) 135, 405
FokI GGATG 2 cut(s) 125, 598
FriOI GRGCYC 1 cut(s) 799
Fsp4HI GCNGC 2 cut(s) 135, 405
FspBI CTAG 2 cut(s) 317, 1075
GlaI GCGC 1 cut(s) 758
GluI GCNGC 2 cut(s) 135, 405
GsuI CTGGAG 2 cut(s) 710, 996
HaeIII GGCC 1 cut(s) 367
HapII CCGG 2 cut(s) 218, 1067
HhaI GCGC 1 cut(s) 759
Hin1II CATG 7 cut(s) 62, 362, 412, 566, 577, 646, 974
Hin6I GCGC 1 cut(s) 757
HinP1I GCGC 1 cut(s) 757
HindIII AAGCTT 1 cut(s) 700
HinfI GANTC 8 cut(s) 169, 281, 308, 323, 440, 803, 936, 1023
HpaII CCGG 2 cut(s) 218, 1067
HphI GGTGA 1 cut(s) 813
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 8 cut(s) 160, 205, 280, 448, 487, 883, 941, 1028
Hpy188III TCNNGA 4 cut(s) 68, 295, 800, 900
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 5 cut(s) 143, 426, 430, 443, 766
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 2 cut(s) 728, 751
HpyCH4V TGCA 4 cut(s) 116, 275, 518, 787
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 5 cut(s) 12, 159, 303, 384, 1002
HpySE526I ACGT 2 cut(s) 728, 751
Hsp92II CATG 7 cut(s) 62, 362, 412, 566, 577, 646, 974
HspAI GCGC 1 cut(s) 757
Kzo9I GATC 8 cut(s) 43, 173, 205, 452, 565, 639, 695, 818
LguI GCTCTTC 1 cut(s) 787
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 9 cut(s) 116, 162, 231, 447, 674, 878, 885, 960, 1014
Lsp1109I GCAGC 2 cut(s) 121, 391
LweI GCATC 3 cut(s) 103, 284, 1045
MaeI CTAG 2 cut(s) 317, 1075
MaeII ACGT 2 cut(s) 728, 751
MaeIII GTNAC 3 cut(s) 669, 845, 854
MalI GATC 8 cut(s) 45, 175, 207, 454, 567, 641, 697, 820
MbiI CCGCTC 1 cut(s) 416
MboI GATC 8 cut(s) 43, 173, 205, 452, 565, 639, 695, 818
MboII GAAGA 8 cut(s) 50, 53, 349, 536, 545, 631, 773, 804
MfeI CAATTG 1 cut(s) 50
MflI RGATCY 2 cut(s) 43, 452
MhlI GDGCHC 1 cut(s) 799
MlyI GAGTC 4 cut(s) 178, 290, 449, 812
MseI TTAA 4 cut(s) 90, 99, 512, 861
MspI CCGG 2 cut(s) 218, 1067
MunI CAATTG 1 cut(s) 50
Mva1269I GAATGC 1 cut(s) 1002
MvnI CGCG 1 cut(s) 759
MwoI GCNNNNNNNGC 1 cut(s) 413
NcoI CCATGG 1 cut(s) 573
NdeII GATC 8 cut(s) 43, 173, 205, 452, 565, 639, 695, 818
NlaIII CATG 7 cut(s) 62, 362, 412, 566, 577, 646, 974
NspI RCATGY 1 cut(s) 974
PciSI GCTCTTC 1 cut(s) 787
PcsI WCGNNNNNNNCGW 1 cut(s) 1032
PctI GAATGC 1 cut(s) 1002
PfeI GAWTC 4 cut(s) 308, 323, 936, 1023
PflMI CCANNNNNTGG 2 cut(s) 92, 974
PinAI ACCGGT 1 cut(s) 217
PkrI GCNGC 2 cut(s) 136, 406
PleI GAGTC 4 cut(s) 177, 289, 448, 811
PpsI GAGTC 4 cut(s) 177, 289, 448, 811
PshBI ATTAAT 1 cut(s) 90
PsiI TTATAA 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 799
PspPI GGNCC 1 cut(s) 366
PsuI RGATCY 2 cut(s) 43, 452
RsaI GTAC 4 cut(s) 257, 539, 966, 1007
RsaNI GTAC 4 cut(s) 256, 538, 965, 1006
SacI GAGCTC 1 cut(s) 799
SapI GCTCTTC 1 cut(s) 787
SaqAI TTAA 4 cut(s) 90, 99, 512, 861
SatI GCNGC 2 cut(s) 135, 405
Sau3AI GATC 8 cut(s) 43, 173, 205, 452, 565, 639, 695, 818
Sau96I GGNCC 1 cut(s) 366
SchI GAGTC 4 cut(s) 178, 290, 449, 812
SduI GDGCHC 1 cut(s) 799
SfaNI GCATC 3 cut(s) 103, 284, 1045
SmiI ATTTAAAT 1 cut(s) 513
SsiI CCGC 1 cut(s) 414
SspMI CTAG 2 cut(s) 317, 1075
SstI GAGCTC 1 cut(s) 799
StyI CCWWGG 1 cut(s) 573
SwaI ATTTAAAT 1 cut(s) 513
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 2 cut(s) 731, 754
TaqI TCGA 3 cut(s) 172, 244, 648
TatI WGTACW 2 cut(s) 537, 1005
TfiI GAWTC 4 cut(s) 308, 323, 936, 1023
Tru1I TTAA 4 cut(s) 90, 99, 512, 861
Tru9I TTAA 4 cut(s) 90, 99, 512, 861
TscAI CASTG 2 cut(s) 616, 994
TseI GCWGC 2 cut(s) 134, 404
TspDTI ATGAA 6 cut(s) 162, 537, 564, 611, 884, 1026
TspRI CASTG 2 cut(s) 616, 994
Van91I CCANNNNNTGG 2 cut(s) 92, 974
VspI ATTAAT 1 cut(s) 90
XapI RAATTY 2 cut(s) 25, 904
XceI RCATGY 1 cut(s) 974
XcmI CCANNNNNNNNNTGG 2 cut(s) 266, 872
XspI CTAG 2 cut(s) 317, 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.