Rh4BG046900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001696
Physical Location & Seq
Reverse (-)
8560215 .. 8560580
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG046900.1

Sequence Viewer

Length: 366 bp
ATGTTGACCAATTTGGATTCCATAATAGATCCAACAGATCGTGAATTCTTGCAGATGAGGAAGGCAGAAGTTATGCAAAGAAGAGCTCGTGAGTCTCAATCACAAGGATCACCACCTACTACATTTGGCTATGGTAACTTTAGTAACCTGAACCAGTTTCAAAGTGGTTCTGAAGCTACATTTCATTCTGGAAATTTTGGTAGCCCTTTACAATTTTCAAGGGGATTCAGAGGAAGTGGTAGGAGTGGAGGAGTACCACATGCTGGAGAAAGTAGCGGTGGAGGAGTGCCTGAGTACAATGAAAGTGGTGGATTCGGAACAAGCGATGGTTATGGAGGAAGTGATGCTAATCTACCGGAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.87

Weight (kDa)

5.02

Isoelectric Point (pI)

54.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 263
AciI CCGC 1 cut(s) 276
AclWI GGATC 2 cut(s) 23, 115
AcsI RAATTY 2 cut(s) 44, 193
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 2 cut(s) 255, 296
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 161, 219
AluBI AGCT 2 cut(s) 86, 176
AluI AGCT 2 cut(s) 86, 176
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 2 cut(s) 23, 115
ApoI RAATTY 2 cut(s) 44, 193
AsuHPI GGTGA 1 cut(s) 102
BanII GRGCYC 1 cut(s) 88
BauI CACGAG 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 88
BccI CCATC 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 364
BmsI GCATC 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 285
BsaBI GATNNNNATC 1 cut(s) 348
BsaWI WCCGGW 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 348
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 2 cut(s) 264, 297
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 3 cut(s) 28, 37, 107
BspACI CCGC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 283
BspPI GGATC 2 cut(s) 23, 115
BspQI GCTCTTC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 154
BssMI GATC 3 cut(s) 28, 37, 107
BssSI CACGAG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 291
BstKTI GATC 3 cut(s) 31, 40, 110
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 3 cut(s) 28, 37, 107
BstNSI RCATGY 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtgZI GCGATG 1 cut(s) 339
Csp6I GTAC 2 cut(s) 254, 295
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 1 cut(s) 260
CviJI RGCY 4 cut(s) 86, 129, 176, 204
CviKI_1 RGCY 4 cut(s) 86, 129, 176, 204
CviQI GTAC 2 cut(s) 254, 295
DdeI CTNAG 1 cut(s) 291
DpnI GATC 3 cut(s) 30, 39, 109
DpnII GATC 3 cut(s) 28, 37, 107
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 88
FaeI CATG 1 cut(s) 263
FaiI YATR 5 cut(s) 23, 74, 132, 261, 333
FatI CATG 1 cut(s) 259
FriOI GRGCYC 1 cut(s) 88
FspBI CTAG 1 cut(s) 364
GsuI CTGGAG 1 cut(s) 285
HapII CCGG 1 cut(s) 356
Hin1II CATG 1 cut(s) 263
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 4 cut(s) 17, 92, 225, 312
HpaII CCGG 1 cut(s) 356
HphI GGTGA 1 cut(s) 102
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 172, 230, 317
Hpy188III TCNNGA 3 cut(s) 41, 89, 189
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 52, 76
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 1 cut(s) 263
Kzo9I GATC 3 cut(s) 28, 37, 107
LguI GCTCTTC 1 cut(s) 76
LpnPI CCDG 5 cut(s) 161, 167, 174, 249, 303
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 364
MaeIII GTNAC 2 cut(s) 134, 143
MalI GATC 3 cut(s) 30, 39, 109
MboI GATC 3 cut(s) 28, 37, 107
MboII GAAGA 1 cut(s) 93
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 4 cut(s) 10, 44, 193, 212
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 5 cut(s) 51, 224, 242, 275, 329
MspI CCGG 1 cut(s) 356
NdeII GATC 3 cut(s) 28, 37, 107
NlaIII CATG 1 cut(s) 263
NspI RCATGY 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 3 cut(s) 17, 225, 312
PflMI CCANNNNNTGG 1 cut(s) 263
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Psp124BI GAGCTC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 2 cut(s) 255, 296
RsaNI GTAC 2 cut(s) 254, 295
SacI GAGCTC 1 cut(s) 88
SapI GCTCTTC 1 cut(s) 76
Sau3AI GATC 3 cut(s) 28, 37, 107
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 88
SetI ASST 4 cut(s) 88, 118, 150, 178
SfaNI GCATC 1 cut(s) 334
Sse9I AATT 4 cut(s) 10, 44, 193, 212
SsiI CCGC 1 cut(s) 276
SspMI CTAG 1 cut(s) 364
SstI GAGCTC 1 cut(s) 88
TasI AATT 4 cut(s) 10, 44, 193, 212
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 3 cut(s) 17, 225, 312
TspDTI ATGAA 2 cut(s) 173, 315
Van91I CCANNNNNTGG 1 cut(s) 263
XapI RAATTY 2 cut(s) 44, 193
XceI RCATGY 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
XspI CTAG 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.