Rh6DG172800

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001696
Physical Location & Seq
Forward (+)
30100286 .. 30103936
3651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG172800.1

Sequence Viewer

Length: 822 bp
ATGGATTCATCCCAAATATCATCATCCTCTCTTTCTTCAAATGGAACCGTTGAGTATTGCAATTCTGTCTTGGCCGCATTTGATCGGGAACAAGATTTGTTACTTCGTATGTGTGCTAACAACAATCTCCTCTTAGCAGAAAATCTCGACGGCGAAGAAGATGATGCTCAATCATGCCGGAGAGATGGAGATGAGCAAGAGTACATCAACGATGAAGTTGCTTCACATGATCGTCCCATGGGAACGAGGATGGCAAAGATGAAAAGGAAAGCCACCGATGAGAAGAAAAAGAATTATGAGAAGATCATGGCCGATAACCAAGCAATAAAAGAGTTACTTGAAAAAAGTATGATGGAGAGATCAAGCTTCGCTTCCAAGTTTGACCATTACACGTCAAGCAAATTGGATATTCAACGTCAGCGTGAAGAGAATAAAATCATGCTGACCAATTTGGATTCCATAACAGATCCAACAGACCGTGAATTCTTGAAGATGAGGAAGGCAGAAGTTATGCAAAGAAGAGCTCGTGAGTCTCAATCACAAGGATCACCACCTACTACATTTGGCTATGGTAACTTTAGTAACCTAAACCAGTTTCAAAGTGGTTCTGAAGCTACATTTCATTCTGGAAATTTTGGTAGTCCTTTACAATTTTCAAGTGGATTCGGAGGAAGTGGTGGGAGTGGAGGAGTACCACATGCTGGAGGAAGTAGTGGGTTTGGAACAAGTAGCGGTGGAGGAGTGCCTCAGTACAATGAAAGTGGTGGATTCGGAACAAGCGATGGTTATGGAGGAAGTGATGCTAATCTACCGGAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

273

Amino Acids

29.79

Weight (kDa)

4.94

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 65 - 169 2.4e-08 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 701
AciI CCGC 2 cut(s) 75, 732
AclWI GGATC 2 cut(s) 461, 553
AcoI YGGCCR 2 cut(s) 72, 309
AcsI RAATTY 2 cut(s) 482, 631
AcuI CTGAAG 1 cut(s) 630
AfaI GTAC 3 cut(s) 203, 693, 752
AfiI CCNNNNNNNGG 1 cut(s) 701
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 6 cut(s) 39, 341, 413, 490, 599, 657
AjiI CACGTC 1 cut(s) 393
AluBI AGCT 3 cut(s) 366, 524, 614
AluI AGCT 3 cut(s) 366, 524, 614
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 1 cut(s) 537
AlwI GGATC 2 cut(s) 461, 553
AoxI GGCC 2 cut(s) 72, 309
ApoI RAATTY 2 cut(s) 482, 631
AsuHPI GGTGA 1 cut(s) 540
BanII GRGCYC 1 cut(s) 526
BauI CACGAG 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 526
BccI CCATC 4 cut(s) 179, 244, 346, 776
BceAI ACGGC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BcoDI GTCTC 1 cut(s) 537
BfaI CTAG 1 cut(s) 820
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmgBI CACGTC 1 cut(s) 393
BmiI GGNNCC 1 cut(s) 46
BmsI GCATC 2 cut(s) 154, 790
BpmI CTGGAG 1 cut(s) 723
BsaBI GATNNNNATC 1 cut(s) 804
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 811
Bsc4I CCNNNNNNNGG 1 cut(s) 701
Bse1I ACTGG 1 cut(s) 592
Bse8I GATNNNNATC 1 cut(s) 804
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 3 cut(s) 8, 23, 255
BseJI GATNNNNATC 1 cut(s) 804
BseLI CCNNNNNNNGG 1 cut(s) 701
BseMII CTCAG 1 cut(s) 761
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 3 cut(s) 119, 702, 753
BshFI GGCC 2 cut(s) 74, 311
BsiHKAI GWGCWC 1 cut(s) 526
BsiSI CCGG 2 cut(s) 178, 812
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 701
BsmAI GTCTC 1 cut(s) 537
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 2 cut(s) 74, 311
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 6 cut(s) 82, 229, 303, 359, 466, 545
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 2 cut(s) 75, 732
BspANI GGCC 2 cut(s) 74, 311
BspCNI CTCAG 1 cut(s) 760
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 2 cut(s) 461, 553
BspQI GCTCTTC 1 cut(s) 514
BsrI ACTGG 1 cut(s) 592
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 6 cut(s) 82, 229, 303, 359, 466, 545
BssSI CACGAG 1 cut(s) 525
BssT1I CCWWGG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 49, 479
Bst6I CTCTTC 2 cut(s) 420, 514
BstDEI CTNAG 2 cut(s) 133, 747
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 3 cut(s) 8, 23, 255
BstKTI GATC 6 cut(s) 85, 232, 306, 362, 469, 548
BstMAI GTCTC 1 cut(s) 537
BstMBI GATC 6 cut(s) 82, 229, 303, 359, 466, 545
BstNSI RCATGY 1 cut(s) 701
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 2 cut(s) 74, 311
BtgI CCRYGG 1 cut(s) 237
BtgZI GCGATG 1 cut(s) 795
BtrI CACGTC 1 cut(s) 393
BtsCI GGATG 3 cut(s) 8, 23, 255
Csp6I GTAC 3 cut(s) 202, 692, 751
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviAII CATG 6 cut(s) 174, 227, 238, 307, 439, 698
CviJI RGCY 7 cut(s) 74, 272, 311, 366, 524, 567, 614
CviKI_1 RGCY 7 cut(s) 74, 272, 311, 366, 524, 567, 614
CviQI GTAC 3 cut(s) 202, 692, 751
DdeI CTNAG 2 cut(s) 133, 747
DpnI GATC 6 cut(s) 84, 231, 305, 361, 468, 547
DpnII GATC 6 cut(s) 82, 229, 303, 359, 466, 545
EaeI YGGCCR 2 cut(s) 72, 309
Eam1104I CTCTTC 2 cut(s) 420, 514
EarI CTCTTC 2 cut(s) 420, 514
Ecl136II GAGCTC 1 cut(s) 524
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 526
Eco53kI GAGCTC 1 cut(s) 524
Eco57I CTGAAG 1 cut(s) 630
EcoICRI GAGCTC 1 cut(s) 524
EcoRI GAATTC 1 cut(s) 482
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 526
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 6 cut(s) 177, 230, 241, 310, 442, 701
FalI AAGNNNNNCTT 4 cut(s) 321, 353, 355, 387
FaqI GGGAC 1 cut(s) 219
FatI CATG 6 cut(s) 173, 226, 237, 306, 438, 697
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 2 cut(s) 10, 262
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 820
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 2 cut(s) 74, 311
HapII CCGG 2 cut(s) 178, 812
Hin1II CATG 6 cut(s) 177, 230, 241, 310, 442, 701
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 5 cut(s) 5, 455, 530, 663, 768
HpaII CCGG 2 cut(s) 178, 812
HphI GGTGA 1 cut(s) 540
Hpy188I TCNGA 3 cut(s) 610, 668, 773
Hpy188III TCNNGA 5 cut(s) 86, 146, 487, 527, 627
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 493
HpyCH4III ACNGT 2 cut(s) 49, 479
HpyCH4IV ACGT 2 cut(s) 392, 415
HpyCH4V TGCA 2 cut(s) 60, 514
HpyF3I CTNAG 2 cut(s) 133, 747
HpySE526I ACGT 2 cut(s) 392, 415
Hsp92II CATG 6 cut(s) 177, 230, 241, 310, 442, 701
Kzo9I GATC 6 cut(s) 82, 229, 303, 359, 466, 545
LguI GCTCTTC 1 cut(s) 514
LpnPI CCDG 4 cut(s) 191, 605, 612, 687
LweI GCATC 2 cut(s) 154, 790
MaeI CTAG 1 cut(s) 820
MaeII ACGT 2 cut(s) 392, 415
MaeIII GTNAC 4 cut(s) 99, 333, 572, 581
MalI GATC 6 cut(s) 84, 231, 305, 361, 468, 547
MboI GATC 6 cut(s) 82, 229, 303, 359, 466, 545
MboII GAAGA 8 cut(s) 27, 167, 170, 295, 313, 437, 502, 531
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 7 cut(s) 61, 292, 401, 448, 482, 631, 650
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 1 cut(s) 494
MspI CCGG 2 cut(s) 178, 812
NcoI CCATGG 1 cut(s) 237
NdeII GATC 6 cut(s) 82, 229, 303, 359, 466, 545
NlaIII CATG 6 cut(s) 177, 230, 241, 310, 442, 701
NlaIV GGNNCC 1 cut(s) 46
NspI RCATGY 1 cut(s) 701
PciSI GCTCTTC 1 cut(s) 514
PcsI WCGNNNNNNNCGW 1 cut(s) 777
PfeI GAWTC 4 cut(s) 5, 455, 663, 768
PflMI CCANNNNNTGG 1 cut(s) 701
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
Psp124BI GAGCTC 1 cut(s) 526
PspN4I GGNNCC 1 cut(s) 46
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 3 cut(s) 203, 693, 752
RsaNI GTAC 3 cut(s) 202, 692, 751
SacI GAGCTC 1 cut(s) 526
SapI GCTCTTC 1 cut(s) 514
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 6 cut(s) 82, 229, 303, 359, 466, 545
SchI GAGTC 1 cut(s) 539
SduI GDGCHC 1 cut(s) 526
SetI ASST 7 cut(s) 368, 395, 418, 526, 556, 588, 616
SfaNI GCATC 2 cut(s) 154, 790
Sse9I AATT 7 cut(s) 61, 292, 401, 448, 482, 631, 650
SsiI CCGC 2 cut(s) 75, 732
SspMI CTAG 1 cut(s) 820
SstI GAGCTC 1 cut(s) 526
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 2 cut(s) 49, 479
TaiI ACGT 2 cut(s) 395, 418
TaqI TCGA 1 cut(s) 147
TasI AATT 7 cut(s) 61, 292, 401, 448, 482, 631, 650
TatI WGTACW 2 cut(s) 201, 750
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 4 cut(s) 5, 455, 663, 768
TspDTI ATGAA 4 cut(s) 228, 275, 611, 771
Van91I CCANNNNNTGG 1 cut(s) 701
XapI RAATTY 2 cut(s) 482, 631
XceI RCATGY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 599
XspI CTAG 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.