Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006797.1

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Forward (+)

2604 .. 5230

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006797.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgcacaatatgatcatcgacgatgagcgtgatttgacagctccaattagagaatttaatcatgcacctgcccctactgttgagatggttgttgatgaagatgcacgatttaatcagtttcttgctcgaaataggcaaatcaaggaacaaaaggctcattttgagcttcgggatgcattgattgatcatctatgggatcgtcatggtaaagaactaaagatgaagcttgaagtaaaaaagtttcaatttgatcatgtgtggcctcttctaaaaaatgcggaaaaatggcttgataatgctgccatgcacgtcgctaaactgcatagaagaaagaagtcatctgaaggatctcaatcaggttctcgcacatcaaagtcatctgaaactccatcattttgtgttgatttgaatgcagatgaagatgagcaagagtacatcaatgatgaagttgctttacatgatcgtcccatgggaacggagatggcaaagatgaaaaggaaatccactgaggagaagaaaaagaattatgataagatcatggccgacaatcaagcgataaaagagttacttgaaaaaagtatgctggagaaaacaaccttcgcttccaaaattgagcattacacatcaaacaaactgaatatccaacgccagcgcgatgaggacaaaatcatgctaaccagtttggattccataacagatccaacggaccgtgacttcttgaagatgagaaaggcggaaattatgcagagaagagctcgtgagttccaatcacaaggaccacccgctacatttggctacggtaactttagtaacctaaactcattccaaaatggttctgaagctacctttcattatggaaattttggtagtcccttacaatttccaagtggattcgaaggaagcggtgcatatggaggagtgccccatgccggaggaagtagtcaatttggaacaagtagtgctgaagttgtgcctgacgacaatcaaagtggtggatttagaacaagtgatggttatggaggaagtgatgctaatctgccggaatattacctaaatttagttttgtttttttatgtgtatttcaataattgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

364

Amino Acids

41.58

Weight (kDa)

5.88

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	76
Acc36I	ACCTGC	1 cut(s)	76
AccII	CGCG	1 cut(s)	654
AciI	CCGC	4 cut(s)	278, 734, 783, 903
AclWI	GGATC	3 cut(s)	204, 355, 692
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	3 cut(s)	53, 859, 1054
AcuI	CTGAAG	3 cut(s)	363, 858, 984
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	1 cut(s)	929
AgsI	TTSAA	6 cut(s)	230, 245, 409, 572, 721, 1084
AjiI	CACGTC	1 cut(s)	310
AluBI	AGCT	5 cut(s)	41, 166, 226, 755, 842
AluI	AGCT	5 cut(s)	41, 166, 226, 755, 842
Alw21I	GWGCWC	1 cut(s)	757
AlwI	GGATC	3 cut(s)	204, 355, 692
AoxI	GGCC	2 cut(s)	260, 540
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	3 cut(s)	53, 859, 1054
AspLEI	GCGC	1 cut(s)	654
AspS9I	GGNCC	2 cut(s)	706, 776
AsuII	TTCGAA	1 cut(s)	894
AvaII	GGWCC	2 cut(s)	706, 776
BaeGI	GKGCMC	1 cut(s)	924
BanII	GRGCYC	1 cut(s)	757
BarI	GAAGNNNNNNTAC	2 cut(s)	438, 470
BauI	CACGAG	1 cut(s)	756
Bbv12I	GWGCWC	1 cut(s)	757
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	4 cut(s)	79, 397, 475, 1004
BclI	TGATCA	3 cut(s)	12, 184, 250
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme18I	GGWCC	2 cut(s)	706, 776
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	706, 776
BmsI	GCATC	3 cut(s)	91, 163, 1018
BplI	GAGNNNNNCTC	2 cut(s)	739, 771
BpmI	CTGGAG	1 cut(s)	605
Bpu14I	TTCGAA	1 cut(s)	894
BsaBI	GATNNNNATC	2 cut(s)	352, 1032
BsaJI	CCNNGG	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	1 cut(s)	929
Bse1I	ACTGG	1 cut(s)	678
Bse8I	GATNNNNATC	2 cut(s)	352, 1032
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	1 cut(s)	178
BseJI	GATNNNNATC	2 cut(s)	352, 1032
BseLI	CCNNNNNNNGG	1 cut(s)	929
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	678
BseRI	GAGGAG	2 cut(s)	524, 930
BseSI	GKGCMC	1 cut(s)	924
BseXI	GCAGC	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	654
BshFI	GGCC	2 cut(s)	262, 542
BsiHKAI	GWGCWC	1 cut(s)	757
BsiSI	CCGG	2 cut(s)	930, 1040
BslFI	GGGAC	2 cut(s)	450, 855
BslI	CCNNNNNNNGG	1 cut(s)	929
BsmFI	GGGAC	2 cut(s)	450, 855
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	262, 542
Bsp119I	TTCGAA	1 cut(s)	894
Bsp1286I	GDGCHC	2 cut(s)	757, 924
Bsp143I	GATC	8 cut(s)	12, 184, 196, 250, 347, 460, 534, 697
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	4 cut(s)	278, 734, 783, 903
BspANI	GGCC	2 cut(s)	262, 542
BspCNI	CTCAG	1 cut(s)	499
BspFNI	CGCG	1 cut(s)	654
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	3 cut(s)	204, 355, 692
BspQI	GCTCTTC	1 cut(s)	745
BspT104I	TTCGAA	1 cut(s)	894
BsrI	ACTGG	1 cut(s)	678
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	8 cut(s)	12, 184, 196, 250, 347, 460, 534, 697
BssSI	CACGAG	1 cut(s)	756
BssT1I	CCWWGG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	756
Bst4CI	ACNGT	3 cut(s)	79, 710, 800
Bst6I	CTCTTC	2 cut(s)	270, 745
BstBI	TTCGAA	1 cut(s)	894
BstC8I	GCNNGC	1 cut(s)	650
BstDEI	CTNAG	1 cut(s)	507
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	654
BstHHI	GCGC	1 cut(s)	654
BstKTI	GATC	8 cut(s)	15, 187, 199, 253, 350, 463, 537, 700
BstMBI	GATC	8 cut(s)	12, 184, 196, 250, 347, 460, 534, 697
BstSLI	GKGCMC	1 cut(s)	924
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	286
BstX2I	RGATCY	2 cut(s)	347, 697
BstYI	RGATCY	2 cut(s)	347, 697
BsuRI	GGCC	2 cut(s)	262, 542
BtgI	CCRYGG	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	669
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	504
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	650
CfoI	GCGC	1 cut(s)	654
Cfr13I	GGNCC	2 cut(s)	706, 776
CpoI	CGGWCCG	1 cut(s)	706
Csp6I	GTAC	1 cut(s)	433
CspCI	CAANNNNNGTGG	2 cut(s)	970, 1005
CspI	CGGWCCG	1 cut(s)	706
CviAII	CATG	9 cut(s)	62, 203, 254, 304, 458, 469, 538, 670, 926
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	8 cut(s)	14, 186, 198, 252, 349, 462, 536, 699
DpnII	GATC	8 cut(s)	12, 184, 196, 250, 347, 460, 534, 697
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	2 cut(s)	270, 745
EarI	CTCTTC	2 cut(s)	270, 745
EciI	GGCGGA	1 cut(s)	749
Ecl136II	GAGCTC	1 cut(s)	755
Eco130I	CCWWGG	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	757
Eco47I	GGWCC	2 cut(s)	706, 776
Eco53kI	GAGCTC	1 cut(s)	755
Eco57I	CTGAAG	3 cut(s)	363, 858, 984
EcoICRI	GAGCTC	1 cut(s)	755
EcoT14I	CCWWGG	1 cut(s)	468
EcoT22I	ATGCAT	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	757
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	9 cut(s)	65, 206, 257, 307, 461, 472, 541, 673, 929
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	2 cut(s)	450, 855
FatI	CATG	9 cut(s)	61, 202, 253, 303, 457, 468, 537, 669, 925
FauI	CCCGC	1 cut(s)	790
FauNDI	CATATG	1 cut(s)	910
FbaI	TGATCA	3 cut(s)	12, 184, 250
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	1 cut(s)	300
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	2 cut(s)	262, 542
HapII	CCGG	2 cut(s)	930, 1040
HhaI	GCGC	1 cut(s)	654
Hin1II	CATG	9 cut(s)	65, 206, 257, 307, 461, 472, 541, 673, 929
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	2 cut(s)	686, 891
HpaII	CCGG	2 cut(s)	930, 1040
Hpy188I	TCNGA	3 cut(s)	343, 382, 838
Hpy188III	TCNNGA	3 cut(s)	170, 718, 758
Hpy99I	CGWCG	2 cut(s)	23, 314
HpyAV	CCTTC	3 cut(s)	338, 607, 890
HpyCH4III	ACNGT	3 cut(s)	79, 710, 800
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	9 cut(s)	4, 65, 104, 176, 307, 322, 413, 745, 908
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	9 cut(s)	65, 206, 257, 307, 461, 472, 541, 673, 929
HspAI	GCGC	1 cut(s)	652
Ksp22I	TGATCA	3 cut(s)	12, 184, 250
Kzo9I	GATC	8 cut(s)	12, 184, 196, 250, 347, 460, 534, 697
LguI	GCTCTTC	1 cut(s)	745
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	8 cut(s)	81, 342, 569, 662, 691, 943, 987, 1053
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	3 cut(s)	91, 163, 1018
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	4 cut(s)	564, 710, 800, 809
MalI	GATC	8 cut(s)	14, 186, 198, 252, 349, 462, 536, 699
MboI	GATC	8 cut(s)	12, 184, 196, 250, 347, 460, 534, 697
MboII	GAAGA	7 cut(s)	110, 257, 339, 431, 526, 733, 762
MflI	RGATCY	2 cut(s)	347, 697
MhlI	GDGCHC	2 cut(s)	757, 924
MmeI	TCCRAC	2 cut(s)	667, 725
MnlI	CCTC	6 cut(s)	273, 502, 652, 908, 926, 1013
Mph1103I	ATGCAT	1 cut(s)	178
MseI	TTAA	2 cut(s)	57, 111
MspI	CCGG	2 cut(s)	930, 1040
Mva1269I	GAATGC	1 cut(s)	415
MvnI	CGCG	1 cut(s)	654
NcoI	CCATGG	1 cut(s)	468
NdeI	CATATG	1 cut(s)	910
NdeII	GATC	8 cut(s)	12, 184, 196, 250, 347, 460, 534, 697
NlaIII	CATG	9 cut(s)	65, 206, 257, 307, 461, 472, 541, 673, 929
NmuCI	GTSAC	1 cut(s)	710
NsiI	ATGCAT	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	894
PaqCI	CACCTGC	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	745
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	2 cut(s)	686, 891
PkrI	GCNGC	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	757
PspPI	GGNCC	2 cut(s)	706, 776
PsuI	RGATCY	2 cut(s)	347, 697
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
Rsr2I	CGGWCCG	1 cut(s)	706
RsrII	CGGWCCG	1 cut(s)	706
SacI	GAGCTC	1 cut(s)	757
SapI	GCTCTTC	1 cut(s)	745
SaqAI	TTAA	2 cut(s)	57, 111
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	8 cut(s)	12, 184, 196, 250, 347, 460, 534, 697
Sau96I	GGNCC	2 cut(s)	706, 776
SduI	GDGCHC	2 cut(s)	757, 924
SfaNI	GCATC	3 cut(s)	91, 163, 1018
SfuI	TTCGAA	1 cut(s)	894
SinI	GGWCC	2 cut(s)	706, 776
SsiI	CCGC	4 cut(s)	278, 734, 783, 903
SspI	AATATT	1 cut(s)	1046
SstI	GAGCTC	1 cut(s)	757
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	3 cut(s)	79, 710, 800
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	18, 127, 894
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	2 cut(s)	686, 891
Tru1I	TTAA	2 cut(s)	57, 111
Tru9I	TTAA	2 cut(s)	57, 111
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	710
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	710
TspDTI	ATGAA	6 cut(s)	111, 236, 432, 459, 506, 839
TspGWI	ACGGA	2 cut(s)	491, 719
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	706, 776
XapI	RAATTY	3 cut(s)	53, 859, 1054
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.