Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015243.1

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Reverse (-)

23484 .. 23909

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015243.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgcacattcctaaacctcgtagaagaaagaagtcatctaaaggatctcaatcaagttctcgcacatcaaagacatttgaaactccatcattttgtgttgatttaaatgcagatgaagacgagcaagagtacatcaacaatgaagttgcttcacatgatcgtcccataggaatgaagatggcaaagatgaaaaggaaagtcgccgatgagaagaaaaagaattatgataagatcatggccgacaaccaaacaataaaagagttacttgaaaaaagtatgttggagagatcaagtttcgcttccaagtttgacgattgcacgtcaagcaaactggatattcaatgtcaacatgatgagaataaaatcatgctgaccaatttggtttccataatagacctaacaaaaaagtttcgcttccaagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

141

Amino Acids

16.37

Weight (kDa)

9.22

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	237
AfaI	GTAC	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	80, 269, 341
AjiI	CACGTC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	123
BccI	CCATC	2 cut(s)	94, 172
BmgBI	CACGTC	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	239
Bsp143I	GATC	4 cut(s)	44, 157, 231, 287
BspANI	GGCC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	336
BssMI	GATC	4 cut(s)	44, 157, 231, 287
BstKTI	GATC	4 cut(s)	47, 160, 234, 290
BstMBI	GATC	4 cut(s)	44, 157, 231, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	239
BtrI	CACGTC	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	4 cut(s)	155, 235, 350, 367
CviJI	RGCY	1 cut(s)	239
CviKI_1	RGCY	1 cut(s)	239
CviQI	GTAC	1 cut(s)	130
DpnI	GATC	4 cut(s)	46, 159, 233, 289
DpnII	GATC	4 cut(s)	44, 157, 231, 287
DraI	TTTAAA	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	237
FaeI	CATG	4 cut(s)	158, 238, 353, 370
FaiI	YATR	8 cut(s)	156, 167, 225, 236, 278, 351, 368, 389
FalI	AAGNNNNNCTT	5 cut(s)	249, 281, 283, 315, 398
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	4 cut(s)	154, 234, 349, 366
HaeIII	GGCC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	158, 238, 353, 370
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	3 cut(s)	4, 110, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	4 cut(s)	158, 238, 353, 370
Kzo9I	GATC	4 cut(s)	44, 157, 231, 287
LpnPI	CCDG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	4 cut(s)	46, 159, 233, 289
MboI	GATC	4 cut(s)	44, 157, 231, 287
MboII	GAAGA	4 cut(s)	36, 128, 187, 223
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	2 cut(s)	220, 376
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	324
NdeII	GATC	4 cut(s)	44, 157, 231, 287
NlaIII	CATG	4 cut(s)	158, 238, 353, 370
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	104
Sau3AI	GATC	4 cut(s)	44, 157, 231, 287
SetI	ASST	3 cut(s)	19, 323, 399
SmiI	ATTTAAAT	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	220, 376
SwaI	ATTTAAAT	1 cut(s)	105
TaiI	ACGT	1 cut(s)	323
TasI	AATT	2 cut(s)	220, 376
TatI	WGTACW	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TspDTI	ATGAA	4 cut(s)	129, 156, 188, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.