RLG00000026627

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001696
Physical Location & Seq
Forward (+)
4403895 .. 4405137
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026627

Sequence Viewer

Length: 1140 bp
ATGTCTTCTTCTAGGCGTGGATTGAATTTTACCGTAGAAGAAGATCTACAATTGTGCCATGTTTATCTTGATATTTCTCAATGTCCAATTAATGGTATTAACCAAAAAAAAGATGCACTATGGGAGAGGATTGCTGCTATCTACAATGAAAGCAAGTCTGAGGAAAGGAGTCGATCTGGTGGGTCACTTCAAAGTCGATTTTCTGATCTATGCTTACCGGTCAGTAAACTTCGTGGTCATATTCGACAAATTGAGTACCAAAATCCAAGTGGTGCATCAGAGTCCTATATTTTCAAGAAAGCTAAGGAATCTCTCCTAGATGATTCAACTTATAAGAAGAAAAAGTTTCAATTTGACCATGTGTGGCCCATTCTAAAAAATGCTGAGAAATGGCTTGATAATGCTGCCATGACTGCTCCTAAACCTCGTATAAGGAAGGAGTCATCTGAAGGATCTCAATCAGGTTCTCGCACATCAAGGACATCTAATACTCCATTGTTTTCTGTTGATTTAAATGCAGATGAAGATGAGCAAGAGTACATCAACGATGAAGTTGCTTCACATGATCGTCCCATAGGAACGAGGATGGCGAAGATGAAAAGGAAAGCCACCGATGAGAAGAAAAAGAATTATGATAAGATCATGGCCGATAACCAAGCAATAAAAGAGTTACTTGAAAAAAGTATGCTGGAGAGATCAAGCTTCGCTTCCAAGTTTGACCATTACACGTCAAGCAAATTGGGTATTCAACGTCAGCGCGAAGAGAATAAAATCATGCTGACCAATTTGGATTCCATAACAGATCCAACAGACCGTGAATTCTTGAAGATGAGGAAGGCAGAAGTTATGCAAAGAAGAGCTCGTGAGTCTCAATCACAAGGATCACCACCTACTACATTTGGCTATGGTAACTTTAGTAACCTTAACCAGTTTCAAAGTGGTTCTGAAGCTACATTTCATTCTGGAAATTTTGGTAGTCCTTTACAATTTTCAAGTGGATTCGGAGGAAGTGGTGGGAGTGGAGGAGTACCACATGCTGGAGAAAGTAGCGGTGGAGGAGTGCCTGAGTACAATGAAAGTGGTGGATTCGGAACAAGCGATGGTTATGGAGGAAGTAATGCTAATCTACCGGAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

380

Amino Acids

42.24

Weight (kDa)

7.68

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 114 - 281 2.6e-18 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AccB7I CCANNNNNTGG 2 cut(s) 92, 1037
AccII CGCG 1 cut(s) 759
AciI CCGC 1 cut(s) 1050
AclWI GGATC 3 cut(s) 460, 797, 889
AcoI YGGCCR 1 cut(s) 645
AcsI RAATTY 3 cut(s) 25, 818, 967
AcuI CTGAAG 2 cut(s) 468, 966
AfaI GTAC 4 cut(s) 257, 539, 1029, 1070
AfiI CCNNNNNNNGG 2 cut(s) 92, 1037
AflIII ACRYGT 1 cut(s) 726
AgeI ACCGGT 1 cut(s) 217
AjiI CACGTC 1 cut(s) 729
AluBI AGCT 4 cut(s) 302, 702, 860, 950
AluI AGCT 4 cut(s) 302, 702, 860, 950
Alw21I GWGCWC 1 cut(s) 862
Alw26I GTCTC 1 cut(s) 873
AlwI GGATC 3 cut(s) 460, 797, 889
AoxI GGCC 2 cut(s) 365, 645
ApeKI GCWGC 2 cut(s) 134, 404
ApoI RAATTY 3 cut(s) 25, 818, 967
AseI ATTAAT 1 cut(s) 90
AsiGI ACCGGT 1 cut(s) 217
AspLEI GCGC 1 cut(s) 759
AspS9I GGNCC 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 876
BanII GRGCYC 1 cut(s) 862
BarI GAAGNNNNNNTAC 2 cut(s) 30, 62
BauI CACGAG 1 cut(s) 861
Bbv12I GWGCWC 1 cut(s) 862
BbvI GCAGC 2 cut(s) 121, 391
BccI CCATC 2 cut(s) 580, 1094
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BcoDI GTCTC 1 cut(s) 873
BfaI CTAG 3 cut(s) 12, 317, 1138
BglII AGATCT 1 cut(s) 43
BisI GCNGC 2 cut(s) 135, 405
BlsI GCNGC 2 cut(s) 136, 406
BmgBI CACGTC 1 cut(s) 729
BmgT120I GGNCC 1 cut(s) 366
BmsI GCATC 2 cut(s) 103, 284
BpmI CTGGAG 2 cut(s) 710, 1059
Bpu10I CCTNAGC 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 457
BsaWI WCCGGW 2 cut(s) 217, 1129
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 1037
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 928
Bse8I GATNNNNATC 1 cut(s) 457
BseGI GGATG 1 cut(s) 591
BseJI GATNNNNATC 1 cut(s) 457
BseLI CCNNNNNNNGG 2 cut(s) 92, 1037
BseMII CTCAG 3 cut(s) 150, 375, 1056
BseNI ACTGG 1 cut(s) 928
BseRI GAGGAG 2 cut(s) 1038, 1071
BseXI GCAGC 2 cut(s) 121, 391
Bsh1236I CGCG 1 cut(s) 759
BshFI GGCC 2 cut(s) 367, 647
BshTI ACCGGT 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 862
BsiSI CCGG 2 cut(s) 218, 1130
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 2 cut(s) 92, 1037
BsmAI GTCTC 1 cut(s) 873
BsmFI GGGAC 1 cut(s) 555
BsnI GGCC 2 cut(s) 367, 647
Bsp1286I GDGCHC 1 cut(s) 862
Bsp143I GATC 9 cut(s) 43, 173, 205, 452, 565, 639, 695, 802, 881
BspACI CCGC 1 cut(s) 1050
BspANI GGCC 2 cut(s) 367, 647
BspCNI CTCAG 3 cut(s) 151, 376, 1057
BspFNI CGCG 1 cut(s) 759
BspPI GGATC 3 cut(s) 460, 797, 889
BspQI GCTCTTC 1 cut(s) 850
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 1 cut(s) 928
BssAI RCCGGY 1 cut(s) 217
BssMI GATC 9 cut(s) 43, 173, 205, 452, 565, 639, 695, 802, 881
BssSI CACGAG 1 cut(s) 861
Bst2BI CACGAG 1 cut(s) 861
Bst4CI ACNGT 2 cut(s) 34, 815
Bst6I CTCTTC 2 cut(s) 756, 850
BstDEI CTNAG 4 cut(s) 159, 303, 384, 1065
BstF5I GGATG 1 cut(s) 591
BstFNI CGCG 1 cut(s) 759
BstHHI GCGC 1 cut(s) 759
BstKTI GATC 9 cut(s) 46, 176, 208, 455, 568, 642, 698, 805, 884
BstMAI GTCTC 1 cut(s) 873
BstMBI GATC 9 cut(s) 43, 173, 205, 452, 565, 639, 695, 802, 881
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 1037
BstUI CGCG 1 cut(s) 759
BstV1I GCAGC 2 cut(s) 121, 391
BstX2I RGATCY 3 cut(s) 43, 452, 802
BstYI RGATCY 3 cut(s) 43, 452, 802
BsuRI GGCC 2 cut(s) 367, 647
BtgZI GCGATG 1 cut(s) 1113
BtrI CACGTC 1 cut(s) 729
BtsCI GGATG 1 cut(s) 591
CfoI GCGC 1 cut(s) 759
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 366
Csp6I GTAC 4 cut(s) 256, 538, 1028, 1069
CspAI ACCGGT 1 cut(s) 217
CspCI CAANNNNNGTGG 2 cut(s) 1060, 1095
CviAII CATG 7 cut(s) 59, 359, 409, 563, 643, 775, 1034
CviJI RGCY 9 cut(s) 302, 367, 394, 608, 647, 702, 860, 903, 950
CviKI_1 RGCY 9 cut(s) 302, 367, 394, 608, 647, 702, 860, 903, 950
CviQI GTAC 4 cut(s) 256, 538, 1028, 1069
DdeI CTNAG 4 cut(s) 159, 303, 384, 1065
DpnI GATC 9 cut(s) 45, 175, 207, 454, 567, 641, 697, 804, 883
DpnII GATC 9 cut(s) 43, 173, 205, 452, 565, 639, 695, 802, 881
DraI TTTAAA 1 cut(s) 513
EaeI YGGCCR 1 cut(s) 645
Eam1104I CTCTTC 2 cut(s) 756, 850
EarI CTCTTC 2 cut(s) 756, 850
Ecl136II GAGCTC 1 cut(s) 860
Eco24I GRGCYC 1 cut(s) 862
Eco53kI GAGCTC 1 cut(s) 860
Eco57I CTGAAG 2 cut(s) 468, 966
EcoICRI GAGCTC 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 818
EcoT38I GRGCYC 1 cut(s) 862
FaeI CATG 7 cut(s) 62, 362, 412, 566, 646, 778, 1037
FalI AAGNNNNNCTT 4 cut(s) 657, 689, 691, 723
FaqI GGGAC 1 cut(s) 555
FatI CATG 7 cut(s) 58, 358, 408, 562, 642, 774, 1033
Fnu4HI GCNGC 2 cut(s) 135, 405
FokI GGATG 1 cut(s) 598
FriOI GRGCYC 1 cut(s) 862
Fsp4HI GCNGC 2 cut(s) 135, 405
FspBI CTAG 3 cut(s) 12, 317, 1138
GlaI GCGC 1 cut(s) 758
GluI GCNGC 2 cut(s) 135, 405
GsuI CTGGAG 2 cut(s) 710, 1059
HaeIII GGCC 2 cut(s) 367, 647
HapII CCGG 2 cut(s) 218, 1130
HhaI GCGC 1 cut(s) 759
Hin1II CATG 7 cut(s) 62, 362, 412, 566, 646, 778, 1037
Hin6I GCGC 1 cut(s) 757
HinP1I GCGC 1 cut(s) 757
HindIII AAGCTT 1 cut(s) 700
HinfI GANTC 9 cut(s) 169, 281, 308, 323, 440, 791, 866, 999, 1086
HpaII CCGG 2 cut(s) 218, 1130
HphI GGTGA 1 cut(s) 876
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 7 cut(s) 160, 205, 280, 448, 946, 1004, 1091
Hpy188III TCNNGA 5 cut(s) 68, 295, 823, 863, 963
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 430, 443, 829
HpyCH4III ACNGT 2 cut(s) 34, 815
HpyCH4IV ACGT 2 cut(s) 728, 751
HpyCH4V TGCA 4 cut(s) 116, 275, 518, 850
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 4 cut(s) 159, 303, 384, 1065
HpySE526I ACGT 2 cut(s) 728, 751
Hsp92II CATG 7 cut(s) 62, 362, 412, 566, 646, 778, 1037
HspAI GCGC 1 cut(s) 757
Kzo9I GATC 9 cut(s) 43, 173, 205, 452, 565, 639, 695, 802, 881
LguI GCTCTTC 1 cut(s) 850
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 8 cut(s) 162, 231, 447, 674, 941, 948, 1023, 1077
Lsp1109I GCAGC 2 cut(s) 121, 391
LweI GCATC 2 cut(s) 103, 284
MaeI CTAG 3 cut(s) 12, 317, 1138
MaeII ACGT 2 cut(s) 728, 751
MaeIII GTNAC 4 cut(s) 183, 669, 908, 917
MalI GATC 9 cut(s) 45, 175, 207, 454, 567, 641, 697, 804, 883
MboI GATC 9 cut(s) 43, 173, 205, 452, 565, 639, 695, 802, 881
MboII GAAGA 9 cut(s) 50, 53, 349, 536, 604, 631, 773, 838, 867
MfeI CAATTG 1 cut(s) 50
MflI RGATCY 3 cut(s) 43, 452, 802
MhlI GDGCHC 1 cut(s) 862
MlyI GAGTC 4 cut(s) 178, 290, 449, 875
MmeI TCCRAC 1 cut(s) 830
MnlI CCTC 9 cut(s) 120, 154, 435, 576, 825, 998, 1016, 1049, 1103
MseI TTAA 4 cut(s) 90, 99, 512, 924
MspI CCGG 2 cut(s) 218, 1130
MunI CAATTG 1 cut(s) 50
MvnI CGCG 1 cut(s) 759
MwoI GCNNNNNNNGC 1 cut(s) 413
NdeII GATC 9 cut(s) 43, 173, 205, 452, 565, 639, 695, 802, 881
NlaIII CATG 7 cut(s) 62, 362, 412, 566, 646, 778, 1037
NmuCI GTSAC 1 cut(s) 183
NspI RCATGY 1 cut(s) 1037
PciSI GCTCTTC 1 cut(s) 850
PcsI WCGNNNNNNNCGW 2 cut(s) 587, 1095
PfeI GAWTC 5 cut(s) 308, 323, 791, 999, 1086
PflMI CCANNNNNTGG 2 cut(s) 92, 1037
PinAI ACCGGT 1 cut(s) 217
PkrI GCNGC 2 cut(s) 136, 406
PleI GAGTC 4 cut(s) 177, 289, 448, 874
PpsI GAGTC 4 cut(s) 177, 289, 448, 874
PshBI ATTAAT 1 cut(s) 90
PsiI TTATAA 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 862
PspPI GGNCC 1 cut(s) 366
PsuI RGATCY 3 cut(s) 43, 452, 802
RsaI GTAC 4 cut(s) 257, 539, 1029, 1070
RsaNI GTAC 4 cut(s) 256, 538, 1028, 1069
SacI GAGCTC 1 cut(s) 862
SapI GCTCTTC 1 cut(s) 850
SaqAI TTAA 4 cut(s) 90, 99, 512, 924
SatI GCNGC 2 cut(s) 135, 405
Sau3AI GATC 9 cut(s) 43, 173, 205, 452, 565, 639, 695, 802, 881
Sau96I GGNCC 1 cut(s) 366
SchI GAGTC 4 cut(s) 178, 290, 449, 875
SduI GDGCHC 1 cut(s) 862
SfaNI GCATC 2 cut(s) 103, 284
SmiI ATTTAAAT 1 cut(s) 513
SsiI CCGC 1 cut(s) 1050
SspMI CTAG 3 cut(s) 12, 317, 1138
SstI GAGCTC 1 cut(s) 862
SwaI ATTTAAAT 1 cut(s) 513
TaaI ACNGT 2 cut(s) 34, 815
TaiI ACGT 2 cut(s) 731, 754
TaqI TCGA 3 cut(s) 172, 196, 244
TatI WGTACW 2 cut(s) 537, 1068
TfiI GAWTC 5 cut(s) 308, 323, 791, 999, 1086
Tru1I TTAA 4 cut(s) 90, 99, 512, 924
Tru9I TTAA 4 cut(s) 90, 99, 512, 924
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 2 cut(s) 134, 404
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 6 cut(s) 162, 537, 564, 611, 947, 1089
Van91I CCANNNNNTGG 2 cut(s) 92, 1037
VspI ATTAAT 1 cut(s) 90
XapI RAATTY 3 cut(s) 25, 818, 967
XceI RCATGY 1 cut(s) 1037
XcmI CCANNNNNNNNNTGG 2 cut(s) 266, 935
XspI CTAG 3 cut(s) 12, 317, 1138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.