Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014826.1

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Reverse (-)

3672 .. 4727

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014826.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgcgaagcgccaagtctcttcaaagtcgattttccgatcttaactattgcgtaagcaaatttcgtggttcacttcgccaggtggaaaatcagaatcaaagtggtgcttcagagaaagatatttatgtccaggcaaaacaacatctactagatgatcctaactatacaaagaagaagcttcaatttgatcatgtgtggcctgttctcaaggatgctgaaaaatggaccgataatggtagaagttcaactaaaccacgacaaaaaaattactcaagtgaaggatatgaatcaatgtctcgcacattacaaacgtcaggtacattaccatttgatgtcgatttgaatgcagatgaagacgaacaagagctgtttagtgatgaacttgcctcacctcatcagtctattggtgtaaagaaagcaaagctgaaaaggaaagggttgaatgagaagactaagattgctcaacaagtgaaagaatccaaccaagaactgaaggagttacttgaaaaaagcttgttggagagaaatgctttttcctctaagcatgaggaatatgcatctaaaaaattagctattcaacgtcaacgtgaggagagaaagatcatgcttactagtttggattcaattacagatccagaaggacgtgagtacttacgaatgaaaaaaactgaaataagggagagaagagctcgtgagtcccaactacaacaagcacctgcaacatttggctatggtaattttggatatggacaacactatggaggaggaagtggtggatatggacaatattatggaggaacagctggatatggtgaaattcctcattatggaggaagtggtggatctggaacaagtggtgcacatgcaggagtgcagcaattcggtggtagcagtggatccaatacacatggtggatatggaggaatgccagaacatggaggaagtaatgatagtctaccggaatactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

322

Amino Acids

35.83

Weight (kDa)

8.62

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	724
Acc36I	ACCTGC	1 cut(s)	724
AccB7I	CCANNNNNTGG	1 cut(s)	935
AccI	GTMKAC	1 cut(s)	955
AclWI	GGATC	5 cut(s)	149, 626, 850, 891, 904
AcsI	RAATTY	2 cut(s)	59, 816
AcuI	CTGAAG	2 cut(s)	93, 512
AdeI	CACNNNGTG	1 cut(s)	911
AfaI	GTAC	2 cut(s)	319, 650
AfiI	CCNNNNNNNGG	2 cut(s)	827, 935
AgsI	TTSAA	8 cut(s)	23, 182, 246, 343, 442, 506, 578, 624
AhlI	ACTAGT	1 cut(s)	611
AjiI	CACGTC	1 cut(s)	644
AjnI	CCWGG	2 cut(s)	78, 129
AluBI	AGCT	7 cut(s)	178, 367, 424, 513, 572, 689, 803
AluI	AGCT	7 cut(s)	178, 367, 424, 513, 572, 689, 803
Alw21I	GWGCWC	2 cut(s)	691, 862
Alw26I	GTCTC	2 cut(s)	21, 300
Alw44I	GTGCAC	1 cut(s)	858
AlwI	GGATC	5 cut(s)	149, 626, 850, 891, 904
AoxI	GGCC	1 cut(s)	197
ApaLI	GTGCAC	1 cut(s)	858
ApeKI	GCWGC	1 cut(s)	874
ApoI	RAATTY	2 cut(s)	59, 816
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	2 cut(s)	381, 824
AvaII	GGWCC	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	862
BamHI	GGATCC	1 cut(s)	896
BanII	GRGCYC	1 cut(s)	691
BauI	CACGAG	1 cut(s)	690
BbsI	GAAGAC	2 cut(s)	360, 455
Bbv12I	GWGCWC	2 cut(s)	691, 862
BbvI	GCAGC	1 cut(s)	886
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	2 cut(s)	80, 131
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	2 cut(s)	21, 300
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	2 cut(s)	149, 612
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	724
BisI	GCNGC	1 cut(s)	875
BlsI	GCNGC	1 cut(s)	876
BmcAI	AGTACT	1 cut(s)	650
Bme1390I	CCNGG	2 cut(s)	80, 131
Bme18I	GGWCC	1 cut(s)	225
BmgBI	CACGTC	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	1 cut(s)	898
BmrFI	CCNGG	2 cut(s)	80, 131
BmsI	GCATC	2 cut(s)	202, 566
BpiI	GAAGAC	2 cut(s)	360, 455
BplI	GAGNNNNNCTC	2 cut(s)	673, 705
BpuEI	CTTGAG	2 cut(s)	191, 256
BsaBI	GATNNNNATC	1 cut(s)	286
BsaWI	WCCGGW	1 cut(s)	958
Bsc4I	CCNNNNNNNGG	2 cut(s)	827, 935
Bse8I	GATNNNNATC	1 cut(s)	286
BseBI	CCWGG	2 cut(s)	80, 131
BseGI	GGATG	1 cut(s)	217
BseJI	GATNNNNATC	1 cut(s)	286
BseLI	CCNNNNNNNGG	2 cut(s)	827, 935
BseRI	GAGGAG	2 cut(s)	605, 777
BseSI	GKGCMC	1 cut(s)	862
BseXI	GCAGC	1 cut(s)	886
BsgI	GTGCAG	1 cut(s)	893
BshFI	GGCC	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	691, 862
BsiSI	CCGG	1 cut(s)	959
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	2 cut(s)	827, 935
BsmAI	GTCTC	2 cut(s)	21, 300
BsmFI	GGGAC	1 cut(s)	682
BsmI	GAATGC	2 cut(s)	349, 930
BsnI	GGCC	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	691, 862
Bsp143I	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
BspANI	GGCC	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	898
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	5 cut(s)	149, 626, 850, 891, 904
BspQI	GCTCTTC	1 cut(s)	679
BssMI	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
BssSI	CACGAG	1 cut(s)	690
Bst2BI	CACGAG	1 cut(s)	690
Bst2UI	CCWGG	2 cut(s)	80, 131
Bst6I	CTCTTC	2 cut(s)	24, 679
BstDEI	CTNAG	2 cut(s)	453, 540
BstF5I	GGATG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	7 cut(s)	40, 157, 190, 603, 634, 845, 899
BstMAI	GTCTC	2 cut(s)	21, 300
BstMBI	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
BstNI	CCWGG	2 cut(s)	80, 131
BstNSI	RCATGY	1 cut(s)	866
BstSCI	CCNGG	2 cut(s)	78, 129
BstSLI	GKGCMC	1 cut(s)	862
BstV1I	GCAGC	1 cut(s)	886
BstV2I	GAAGAC	2 cut(s)	360, 455
BstX2I	RGATCY	3 cut(s)	631, 842, 896
BstYI	RGATCY	3 cut(s)	631, 842, 896
BsuRI	GGCC	1 cut(s)	199
BtrI	CACGTC	1 cut(s)	644
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	898
BtsIMutI	CAGTG	1 cut(s)	898
BveI	ACCTGC	1 cut(s)	724
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	2 cut(s)	318, 649
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	6 cut(s)	191, 545, 604, 863, 908, 935
CviJI	RGCY	9 cut(s)	178, 199, 367, 424, 513, 572, 689, 729, 803
CviKI_1	RGCY	9 cut(s)	178, 199, 367, 424, 513, 572, 689, 729, 803
CviQI	GTAC	2 cut(s)	318, 649
DdeI	CTNAG	2 cut(s)	453, 540
DpnI	GATC	7 cut(s)	39, 156, 189, 602, 633, 844, 898
DpnII	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
DraIII	CACNNNGTG	1 cut(s)	911
Eam1104I	CTCTTC	2 cut(s)	24, 679
EarI	CTCTTC	2 cut(s)	24, 679
Ecl136II	GAGCTC	1 cut(s)	689
Eco24I	GRGCYC	1 cut(s)	691
Eco47I	GGWCC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	689
Eco57I	CTGAAG	2 cut(s)	93, 512
EcoICRI	GAGCTC	1 cut(s)	689
EcoRII	CCWGG	2 cut(s)	78, 129
EcoT22I	ATGCAT	1 cut(s)	559
EcoT38I	GRGCYC	1 cut(s)	691
FaeI	CATG	6 cut(s)	194, 548, 607, 866, 911, 938
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	6 cut(s)	190, 544, 603, 862, 907, 934
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	955
Fnu4HI	GCNGC	1 cut(s)	875
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	691
Fsp4HI	GCNGC	1 cut(s)	875
FspBI	CTAG	2 cut(s)	149, 612
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	875
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	1 cut(s)	959
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	6 cut(s)	194, 548, 607, 866, 911, 938
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	584
HindII	GTYRAC	1 cut(s)	584
HindIII	AAGCTT	2 cut(s)	176, 511
HinfI	GANTC	5 cut(s)	94, 287, 476, 620, 695
HpaII	CCGG	1 cut(s)	959
HphI	GGTGA	2 cut(s)	381, 824
Hpy166II	GTNNAC	4 cut(s)	71, 584, 860, 956
Hpy188I	TCNGA	3 cut(s)	37, 93, 112
Hpy188III	TCNNGA	3 cut(s)	635, 692, 846
Hpy8I	GTNNAC	4 cut(s)	71, 584, 860, 956
HpyAV	CCTTC	3 cut(s)	272, 487, 632
HpyCH4IV	ACGT	4 cut(s)	311, 580, 586, 643
HpyCH4V	TGCA	6 cut(s)	347, 557, 719, 860, 866, 874
HpyF3I	CTNAG	2 cut(s)	453, 540
HpySE526I	ACGT	4 cut(s)	311, 580, 586, 643
Hsp92II	CATG	6 cut(s)	194, 548, 607, 866, 911, 938
HspAI	GCGC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
LguI	GCTCTTC	1 cut(s)	679
Lsp1109I	GCAGC	1 cut(s)	886
LweI	GCATC	2 cut(s)	202, 566
MaeI	CTAG	2 cut(s)	149, 612
MaeII	ACGT	4 cut(s)	311, 580, 586, 643
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	7 cut(s)	39, 156, 189, 602, 633, 844, 898
MboI	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
MboII	GAAGA	5 cut(s)	11, 184, 365, 460, 696
MflI	RGATCY	3 cut(s)	631, 842, 896
MhlI	GDGCHC	2 cut(s)	691, 862
MluCI	AATT	8 cut(s)	59, 182, 265, 566, 624, 736, 816, 878
MlyI	GAGTC	1 cut(s)	704
MmeI	TCCRAC	2 cut(s)	498, 504
Mph1103I	ATGCAT	1 cut(s)	559
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	1 cut(s)	959
MspR9I	CCNGG	2 cut(s)	80, 131
Mva1269I	GAATGC	2 cut(s)	349, 930
MvaI	CCWGG	2 cut(s)	80, 131
NdeII	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
NlaIII	CATG	6 cut(s)	194, 548, 607, 866, 911, 938
NlaIV	GGNNCC	1 cut(s)	898
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	1 cut(s)	866
PaqCI	CACCTGC	1 cut(s)	724
PciSI	GCTCTTC	1 cut(s)	679
PctI	GAATGC	2 cut(s)	349, 930
PfeI	GAWTC	4 cut(s)	94, 287, 476, 620
PflMI	CCANNNNNTGG	1 cut(s)	935
PkrI	GCNGC	1 cut(s)	876
PleI	GAGTC	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	703
Psp124BI	GAGCTC	1 cut(s)	691
Psp6I	CCWGG	2 cut(s)	78, 129
PspGI	CCWGG	2 cut(s)	78, 129
PspN4I	GGNNCC	1 cut(s)	898
PspPI	GGNCC	1 cut(s)	225
PsuI	RGATCY	3 cut(s)	631, 842, 896
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	2 cut(s)	319, 650
RsaNI	GTAC	2 cut(s)	318, 649
SacI	GAGCTC	1 cut(s)	691
SapI	GCTCTTC	1 cut(s)	679
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	875
Sau3AI	GATC	7 cut(s)	37, 154, 187, 600, 631, 842, 896
Sau96I	GGNCC	1 cut(s)	225
ScaI	AGTACT	1 cut(s)	650
SchI	GAGTC	1 cut(s)	704
ScrFI	CCNGG	2 cut(s)	80, 131
SduI	GDGCHC	2 cut(s)	691, 862
SfaNI	GCATC	2 cut(s)	202, 566
SinI	GGWCC	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	206, 271
SmoI	CTYRAG	2 cut(s)	206, 271
SpeI	ACTAGT	1 cut(s)	611
Sse9I	AATT	8 cut(s)	59, 182, 265, 566, 624, 736, 816, 878
SspI	AATATT	1 cut(s)	788
SspMI	CTAG	2 cut(s)	149, 612
SstI	GAGCTC	1 cut(s)	691
StyD4I	CCNGG	2 cut(s)	78, 129
TaiI	ACGT	4 cut(s)	314, 583, 589, 646
TaqI	TCGA	2 cut(s)	28, 336
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	8 cut(s)	59, 182, 265, 566, 624, 736, 816, 878
TatI	WGTACW	1 cut(s)	648
TfiI	GAWTC	4 cut(s)	94, 287, 476, 620
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	898
TseI	GCWGC	1 cut(s)	874
TspDTI	ATGAA	4 cut(s)	300, 366, 393, 674
TspRI	CASTG	1 cut(s)	898
Van91I	CCANNNNNTGG	1 cut(s)	935
VneI	GTGCAC	1 cut(s)	858
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	2 cut(s)	59, 816
XceI	RCATGY	1 cut(s)	866
XmiI	GTMKAC	1 cut(s)	955
XspI	CTAG	2 cut(s)	149, 612
ZrmI	AGTACT	1 cut(s)	650
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.