Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Forward (+)

34686414 .. 34688189

Gene Structure 1776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG334200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGAACGAGGATGGCAAAGATGAAAAGGAAAGCCACCGATGAGAAGAAAAAGAATTATGATAAGATCATGGCCGATAACCAAGCAATAAAAGAGTTACTTGAAAAAAGTATGCTGGAGAGATCAAGCTTCGCTTCCAAGTTTGACCATTACACGTCAAGCAAATTGGATATTCAACGTCAGCGCGAAGAGAATAAAATCATGCTGACCAATTTGGATTCCATAACAGATCCAACAGACCGTGAATTCTTGAAGATGAGGAAGGCAGAAGTTATGCAAAGAAGAGCTCGTGAGTCTCAATCACAAGGATCACCACCTACTACATTTGGCTATGGTAACTTTAGTAACCTTAACCAGTTTCAAAGTGGTTCTGAAGCTACATTTCATTCTGGAAATTTTGGTAGTCCTTTACAATTTTCAAGTGGATTCGGAGGAAGTGGTGGGAGTGGAGGAGTACCACATGCTGGAGGAAGTAGCGGTGGAGGAATGCCTGAGTACAATGAAAGTGGTGGATTCGGAACAAGCGATGGTTATGGAGGAACAGACCCTGAACCTCCTCCTCCTCAAGTAATAATAACCAGAGAGCCTGATGATACTGTTATTCCTGGACTGAATTTCCGACAAGACCCACCTGGATTTTGGTGTCCCCTTCGCCTTGACGATCAAATTCCACGGCGTCCGATCAGCGTAAAAGACCCGAATCTCATCGCCGGGGCTGGCCTGACCCTCGTCCAAAACAAACCCGACCTTCAGTTCCTTGAACTCGTCAGAGACGACGAACTTAGCTGCGCCGTCGAGGTCGCCGATCTCCTCGTCAAGGACGTAGGACACGTGGACGATGCAGATTGGGTTGAAGCATGCGGCTTTGAGATTGCGGATGGCCTTGAGGTACTGGATGGCGATGCACTTGTCGTCCTGGGCGCCGCGGGCGAAGATGTGGCCTTCGGGGTTGCGGTGGGCCGAGAAGGGCGGGTGGGCCCACTTGGAGGGCTCGGCGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005801 GO:0012505 GO:0016020 GO:0030134 GO:0030135 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

334

Amino Acids

35.98

Weight (kDa)

4.73

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	920
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccII	CGCG	2 cut(s)	186, 926
AciI	CCGC	7 cut(s)	477, 861, 875, 924, 926, 953, 970
AclWI	GGATC	2 cut(s)	224, 316
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	4 cut(s)	245, 394, 613, 666
AcuI	CTGAAG	2 cut(s)	393, 734
AcvI	CACGTG	1 cut(s)	832
AcyI	GRCGYC	2 cut(s)	676, 921
AfaI	GTAC	3 cut(s)	456, 497, 891
AfiI	CCNNNNNNNGG	3 cut(s)	464, 817, 986
AflIII	ACRYGT	2 cut(s)	153, 829
AgsI	TTSAA	7 cut(s)	104, 176, 253, 362, 420, 761, 854
AjiI	CACGTC	1 cut(s)	156
AjnI	CCWGG	3 cut(s)	604, 631, 915
AluBI	AGCT	4 cut(s)	129, 287, 377, 786
AluI	AGCT	4 cut(s)	129, 287, 377, 786
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	2 cut(s)	300, 765
AlwI	GGATC	2 cut(s)	224, 316
AlwNI	CAGNNNCTG	1 cut(s)	548
AoxI	GGCC	6 cut(s)	72, 718, 880, 939, 958, 976
ApaI	GGGCCC	1 cut(s)	980
ApeKI	GCWGC	1 cut(s)	786
ApoI	RAATTY	4 cut(s)	245, 394, 613, 666
AspLEI	GCGC	3 cut(s)	186, 791, 923
AspS9I	GGNCC	3 cut(s)	958, 976, 977
AsuC2I	CCSGG	1 cut(s)	712
AsuHPI	GGTGA	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	980
BanI	GGYRCC	1 cut(s)	920
BanII	GRGCYC	3 cut(s)	289, 980, 993
BauI	CACGAG	1 cut(s)	288
BbrPI	CACGTG	1 cut(s)	832
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	773
BccI	CCATC	4 cut(s)	7, 521, 872, 890
BceAI	ACGGC	2 cut(s)	689, 776
BciT130I	CCWGG	3 cut(s)	606, 633, 917
BcnI	CCSGG	1 cut(s)	712
BcoDI	GTCTC	2 cut(s)	300, 765
BfoI	RGCGCY	1 cut(s)	924
BisI	GCNGC	3 cut(s)	787, 862, 924
BlsI	GCNGC	3 cut(s)	788, 863, 925
Bme1390I	CCNGG	4 cut(s)	606, 633, 712, 917
BmgBI	CACGTC	1 cut(s)	156
BmgT120I	GGNCC	3 cut(s)	958, 976, 977
BmiI	GGNNCC	2 cut(s)	922, 978
BmrFI	CCNGG	4 cut(s)	606, 633, 712, 917
BmsI	GCATC	2 cut(s)	829, 892
BoxI	GACNNNNGTC	1 cut(s)	728
BpmI	CTGGAG	2 cut(s)	137, 486
BpuEI	CTTGAG	2 cut(s)	549, 905
BpuMI	CCSGG	1 cut(s)	712
BsaAI	YACGTR	1 cut(s)	832
BsaHI	GRCGYC	2 cut(s)	676, 921
BsaJI	CCNNGG	4 cut(s)	671, 711, 916, 924
Bsc4I	CCNNNNNNNGG	3 cut(s)	464, 817, 986
Bse1I	ACTGG	2 cut(s)	355, 897
BseBI	CCWGG	3 cut(s)	606, 633, 917
BseDI	CCNNGG	4 cut(s)	671, 711, 916, 924
BseGI	GGATG	3 cut(s)	18, 883, 901
BseLI	CCNNNNNNNGG	3 cut(s)	464, 817, 986
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	355, 897
BseRI	GAGGAG	5 cut(s)	465, 546, 549, 552, 800
BseSI	GKGCMC	1 cut(s)	980
BseXI	GCAGC	1 cut(s)	773
Bsh1236I	CGCG	2 cut(s)	186, 926
BshFI	GGCC	6 cut(s)	74, 720, 882, 941, 960, 978
BshNI	GGYRCC	1 cut(s)	920
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	711
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	3 cut(s)	464, 817, 986
BsmAI	GTCTC	2 cut(s)	300, 765
BsmBI	CGTCTC	1 cut(s)	765
BsmFI	GGGAC	1 cut(s)	630
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	6 cut(s)	74, 720, 882, 941, 960, 978
Bsp120I	GGGCCC	1 cut(s)	976
Bsp1286I	GDGCHC	3 cut(s)	289, 980, 993
Bsp143I	GATC	7 cut(s)	66, 122, 229, 308, 661, 681, 805
BspACI	CCGC	7 cut(s)	477, 861, 875, 924, 926, 953, 970
BspANI	GGCC	6 cut(s)	74, 720, 882, 941, 960, 978
BspCNI	CTCAG	1 cut(s)	484
BspFNI	CGCG	2 cut(s)	186, 926
BspLI	GGNNCC	2 cut(s)	922, 978
BspPI	GGATC	2 cut(s)	224, 316
BspQI	GCTCTTC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	920
BsrI	ACTGG	2 cut(s)	355, 897
BssECI	CCNNGG	4 cut(s)	671, 711, 916, 924
BssMI	GATC	7 cut(s)	66, 122, 229, 308, 661, 681, 805
BssNI	GRCGYC	2 cut(s)	676, 921
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	3 cut(s)	606, 633, 917
Bst4CI	ACNGT	2 cut(s)	242, 598
Bst6I	CTCTTC	2 cut(s)	183, 277
BstACI	GRCGYC	2 cut(s)	676, 921
BstBAI	YACGTR	1 cut(s)	832
BstC8I	GCNNGC	3 cut(s)	718, 859, 928
BstDEI	CTNAG	2 cut(s)	492, 782
BstDSI	CCRYGG	2 cut(s)	671, 924
BstENI	CCTNNNNNAGG	1 cut(s)	815
BstF5I	GGATG	3 cut(s)	18, 883, 901
BstFNI	CGCG	2 cut(s)	186, 926
BstH2I	RGCGCY	1 cut(s)	924
BstHHI	GCGC	3 cut(s)	186, 791, 923
BstKTI	GATC	7 cut(s)	69, 125, 232, 311, 664, 684, 808
BstMAI	GTCTC	2 cut(s)	300, 765
BstMBI	GATC	7 cut(s)	66, 122, 229, 308, 661, 681, 805
BstMWI	GCNNNNNNNGC	1 cut(s)	927
BstNI	CCWGG	3 cut(s)	606, 633, 917
BstNSI	RCATGY	2 cut(s)	464, 861
BstPAI	GACNNNNGTC	1 cut(s)	728
BstSCI	CCNGG	4 cut(s)	604, 631, 710, 915
BstSLI	GKGCMC	1 cut(s)	980
BstUI	CGCG	2 cut(s)	186, 926
BstV1I	GCAGC	1 cut(s)	773
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	6 cut(s)	74, 720, 882, 941, 960, 978
BtgI	CCRYGG	2 cut(s)	671, 924
BtgZI	GCGATG	3 cut(s)	540, 691, 915
BtrI	CACGTC	1 cut(s)	156
BtsCI	GGATG	3 cut(s)	18, 883, 901
Cac8I	GCNNGC	3 cut(s)	718, 859, 928
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	3 cut(s)	186, 791, 923
Cfr13I	GGNCC	3 cut(s)	958, 976, 977
Cfr42I	CCGCGG	1 cut(s)	927
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	3 cut(s)	455, 496, 890
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	4 cut(s)	70, 202, 461, 858
CviQI	GTAC	3 cut(s)	455, 496, 890
DdeI	CTNAG	2 cut(s)	492, 782
DinI	GGCGCC	1 cut(s)	922
DpnI	GATC	7 cut(s)	68, 124, 231, 310, 663, 683, 807
DpnII	GATC	7 cut(s)	66, 122, 229, 308, 661, 681, 805
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	2 cut(s)	183, 277
EarI	CTCTTC	2 cut(s)	183, 277
Ecl136II	GAGCTC	1 cut(s)	287
Eco24I	GRGCYC	3 cut(s)	289, 980, 993
Eco53kI	GAGCTC	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	393, 734
Eco72I	CACGTG	1 cut(s)	832
EcoICRI	GAGCTC	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	815
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	3 cut(s)	604, 631, 915
EcoT38I	GRGCYC	3 cut(s)	289, 980, 993
EgeI	GGCGCC	1 cut(s)	922
EheI	GGCGCC	1 cut(s)	922
Esp3I	CGTCTC	1 cut(s)	765
FaeI	CATG	4 cut(s)	73, 205, 464, 861
FalI	AAGNNNNNCTT	4 cut(s)	84, 116, 118, 150
FaqI	GGGAC	1 cut(s)	630
FatI	CATG	4 cut(s)	69, 201, 460, 857
FauI	CCCGC	2 cut(s)	919, 963
Fnu4HI	GCNGC	3 cut(s)	787, 862, 924
FokI	GGATG	3 cut(s)	25, 890, 908
FriOI	GRGCYC	3 cut(s)	289, 980, 993
Fsp4HI	GCNGC	3 cut(s)	787, 862, 924
GlaI	GCGC	3 cut(s)	185, 790, 922
GluI	GCNGC	3 cut(s)	787, 862, 924
GsuI	CTGGAG	2 cut(s)	137, 486
HaeII	RGCGCY	1 cut(s)	924
HaeIII	GGCC	6 cut(s)	74, 720, 882, 941, 960, 978
HapII	CCGG	1 cut(s)	711
HgaI	GACGC	1 cut(s)	665
HhaI	GCGC	3 cut(s)	186, 791, 923
Hin1I	GRCGYC	2 cut(s)	676, 921
Hin1II	CATG	4 cut(s)	73, 205, 464, 861
Hin6I	GCGC	3 cut(s)	184, 789, 921
HinP1I	GCGC	3 cut(s)	184, 789, 921
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	5 cut(s)	218, 293, 426, 513, 700
HpaII	CCGG	1 cut(s)	711
HphI	GGTGA	1 cut(s)	303
Hpy166II	GTNNAC	1 cut(s)	835
Hpy188I	TCNGA	6 cut(s)	373, 431, 518, 620, 681, 770
Hpy188III	TCNNGA	3 cut(s)	250, 290, 390
Hpy8I	GTNNAC	1 cut(s)	835
Hpy99I	CGWCG	2 cut(s)	779, 797
HpyAV	CCTTC	5 cut(s)	256, 659, 758, 952, 959
HpyCH4III	ACNGT	2 cut(s)	242, 598
HpyCH4IV	ACGT	4 cut(s)	155, 178, 822, 831
HpyCH4V	TGCA	3 cut(s)	277, 842, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	927
HpyF3I	CTNAG	2 cut(s)	492, 782
HpySE526I	ACGT	4 cut(s)	155, 178, 822, 831
Hsp92I	GRCGYC	2 cut(s)	676, 921
Hsp92II	CATG	4 cut(s)	73, 205, 464, 861
HspAI	GCGC	3 cut(s)	184, 789, 921
KasI	GGCGCC	1 cut(s)	920
KspI	CCGCGG	1 cut(s)	927
Kzo9I	GATC	7 cut(s)	66, 122, 229, 308, 661, 681, 805
LguI	GCTCTTC	1 cut(s)	277
Lsp1109I	GCAGC	1 cut(s)	773
LweI	GCATC	2 cut(s)	829, 892
MaeII	ACGT	4 cut(s)	155, 178, 822, 831
MaeIII	GTNAC	3 cut(s)	96, 335, 344
MalI	GATC	7 cut(s)	68, 124, 231, 310, 663, 683, 807
MboI	GATC	7 cut(s)	66, 122, 229, 308, 661, 681, 805
MboII	GAAGA	5 cut(s)	58, 200, 265, 294, 944
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	3 cut(s)	289, 980, 993
MluCI	AATT	8 cut(s)	55, 164, 211, 245, 394, 413, 613, 666
Mly113I	GGCGCC	1 cut(s)	921
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	257, 643
MseI	TTAA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	926
MspI	CCGG	1 cut(s)	711
MspR9I	CCNGG	4 cut(s)	606, 633, 712, 917
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	3 cut(s)	606, 633, 917
MvnI	CGCG	2 cut(s)	186, 926
MwoI	GCNNNNNNNGC	1 cut(s)	927
NarI	GGCGCC	1 cut(s)	921
NciI	CCSGG	1 cut(s)	712
NdeII	GATC	7 cut(s)	66, 122, 229, 308, 661, 681, 805
NlaIII	CATG	4 cut(s)	73, 205, 464, 861
NlaIV	GGNNCC	2 cut(s)	922, 978
NmeAIII	GCCGAG	2 cut(s)	972, 986
NspI	RCATGY	2 cut(s)	464, 861
PaeI	GCATGC	1 cut(s)	861
PciSI	GCTCTTC	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	5 cut(s)	522, 771, 801, 819, 828
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	4 cut(s)	218, 426, 513, 700
PflMI	CCANNNNNTGG	1 cut(s)	464
PfoI	TCCNGGA	1 cut(s)	604
PkrI	GCNGC	3 cut(s)	788, 863, 925
PleI	GAGTC	1 cut(s)	301
PluTI	GGCGCC	1 cut(s)	924
PmaCI	CACGTG	1 cut(s)	832
PmlI	CACGTG	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	832
PshAI	GACNNNNGTC	1 cut(s)	728
Psp124BI	GAGCTC	1 cut(s)	289
Psp6I	CCWGG	3 cut(s)	604, 631, 915
PspCI	CACGTG	1 cut(s)	832
PspGI	CCWGG	3 cut(s)	604, 631, 915
PspN4I	GGNNCC	2 cut(s)	922, 978
PspOMI	GGGCCC	1 cut(s)	976
PspPI	GGNCC	3 cut(s)	958, 976, 977
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	3 cut(s)	456, 497, 891
RsaNI	GTAC	3 cut(s)	455, 496, 890
SacI	GAGCTC	1 cut(s)	289
SacII	CCGCGG	1 cut(s)	927
SapI	GCTCTTC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	3 cut(s)	787, 862, 924
Sau3AI	GATC	7 cut(s)	66, 122, 229, 308, 661, 681, 805
Sau96I	GGNCC	3 cut(s)	958, 976, 977
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	4 cut(s)	606, 633, 712, 917
SduI	GDGCHC	3 cut(s)	289, 980, 993
SfaNI	GCATC	2 cut(s)	829, 892
SfoI	GGCGCC	1 cut(s)	922
Sfr303I	CCGCGG	1 cut(s)	927
SgrBI	CCGCGG	1 cut(s)	927
SmlI	CTYRAG	2 cut(s)	564, 884
SmoI	CTYRAG	2 cut(s)	564, 884
SphI	GCATGC	1 cut(s)	861
Sse9I	AATT	8 cut(s)	55, 164, 211, 245, 394, 413, 613, 666
SsiI	CCGC	7 cut(s)	477, 861, 875, 924, 926, 953, 970
SspDI	GGCGCC	1 cut(s)	920
SstI	GAGCTC	1 cut(s)	289
StyD4I	CCNGG	4 cut(s)	604, 631, 710, 915
TaaI	ACNGT	2 cut(s)	242, 598
TaiI	ACGT	4 cut(s)	158, 181, 825, 834
TaqI	TCGA	1 cut(s)	795
TasI	AATT	8 cut(s)	55, 164, 211, 245, 394, 413, 613, 666
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	2 cut(s)	864, 926
TfiI	GAWTC	4 cut(s)	218, 426, 513, 700
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseI	GCWGC	1 cut(s)	786
TspDTI	ATGAA	3 cut(s)	38, 374, 516
Van91I	CCANNNNNTGG	1 cut(s)	464
XagI	CCTNNNNNAGG	1 cut(s)	815
XapI	RAATTY	4 cut(s)	245, 394, 613, 666
XceI	RCATGY	2 cut(s)	464, 861
XcmI	CCANNNNNNNNNTGG	2 cut(s)	362, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.