Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Reverse (-)

9603433 .. 9603816

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g16793.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTCATGAATTTGGATTCCATTTCGGATCCAAAAGATCGTGAGTATTTTGAGATGAGAAAAAATGAAATTAGGCAAAGAAGAGCTCGTGAATCCCAACGACAACAATCGCCCATGACATTTGGCTATGACAATTTTGCTAACATGAATTCGTTCCAAGGTGACACACAAGCTAGATTCAACTCTGGAAGCTTTGGTAATGCACTTCAAGTTTCAAGTCAATATGGATCAAGCGGTGAATACGGAGCAAAGCCAAATTATGGAGGAATTGGTGACTATAGAGGAATGAGTCTTTATGAAGGACCTTTTGGATATGGAAAAGGTAAAGACTATGGAGGAAGTGGAGGTACCGGAACAAGCGATGGACATGGAAGAGCCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.02

Weight (kDa)

8.89

Isoelectric Point (pI)

28.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	260
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	3 cut(s)	23, 36, 235
AcsI	RAATTY	2 cut(s)	10, 148
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	181, 209, 216
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	3 cut(s)	86, 173, 192
AluI	AGCT	3 cut(s)	86, 173, 192
Alw21I	GWGCWC	1 cut(s)	88
AlwI	GGATC	3 cut(s)	23, 36, 235
ApoI	RAATTY	2 cut(s)	10, 148
Asp700I	GAANNNNTTC	1 cut(s)	152
Asp718I	GGTACC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	3 cut(s)	173, 248, 284
AvaII	GGWCC	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	2 cut(s)	88, 379
BarI	GAAGNNNNNNTAC	2 cut(s)	331, 363
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	88
BccI	CCATC	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	379
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	30, 349
BmrFI	CCNGG	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	157
BsaWI	WCCGGW	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	260
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	351, 379
BslI	CCNNNNNNNGG	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	88, 379
Bsp143I	GATC	3 cut(s)	28, 37, 227
BspACI	CCGC	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	30, 349
BspPI	GGATC	3 cut(s)	23, 36, 235
BspQI	GCTCTTC	2 cut(s)	76, 367
BspT107I	GGYRCC	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	3 cut(s)	28, 37, 227
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	157
Bst2BI	CACGAG	1 cut(s)	87
Bst6I	CTCTTC	2 cut(s)	76, 367
BstKTI	GATC	3 cut(s)	31, 40, 230
BstMBI	GATC	3 cut(s)	28, 37, 227
BstSCI	CCNGG	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BtgZI	GCGATG	1 cut(s)	375
CciI	TCATGA	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	4 cut(s)	7, 115, 145, 368
CviJI	RGCY	6 cut(s)	86, 126, 173, 192, 253, 377
CviKI_1	RGCY	6 cut(s)	86, 126, 173, 192, 253, 377
CviQI	GTAC	1 cut(s)	348
DpnI	GATC	3 cut(s)	30, 39, 229
DpnII	GATC	3 cut(s)	28, 37, 227
Eam1104I	CTCTTC	2 cut(s)	76, 367
EarI	CTCTTC	2 cut(s)	76, 367
Ecl136II	GAGCTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	157
Eco24I	GRGCYC	2 cut(s)	88, 379
Eco47I	GGWCC	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	2 cut(s)	88, 379
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	4 cut(s)	10, 118, 148, 371
FatI	CATG	4 cut(s)	6, 114, 144, 367
FriOI	GRGCYC	2 cut(s)	88, 379
FspBI	CTAG	1 cut(s)	174
HapII	CCGG	2 cut(s)	351, 379
Hin1II	CATG	4 cut(s)	10, 118, 148, 371
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	4 cut(s)	17, 92, 177, 289
HpaII	CCGG	2 cut(s)	351, 379
HphI	GGTGA	3 cut(s)	173, 248, 284
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	4 cut(s)	7, 41, 89, 186
HpyAV	CCTTC	1 cut(s)	293
HpyCH4V	TGCA	1 cut(s)	203
Hsp92II	CATG	4 cut(s)	10, 118, 148, 371
KpnI	GGTACC	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	28, 37, 227
LguI	GCTCTTC	2 cut(s)	76, 367
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	2 cut(s)	171, 364
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	161, 272
MalI	GATC	3 cut(s)	30, 39, 229
MboI	GATC	3 cut(s)	28, 37, 227
MboII	GAAGA	2 cut(s)	93, 384
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	2 cut(s)	88, 379
MluCI	AATT	6 cut(s)	10, 69, 133, 148, 256, 267
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	4 cut(s)	257, 275, 329, 338
MroXI	GAANNNNTTC	1 cut(s)	152
MspI	CCGG	2 cut(s)	351, 379
MspR9I	CCNGG	1 cut(s)	379
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	3 cut(s)	28, 37, 227
NlaIII	CATG	4 cut(s)	10, 118, 148, 371
NlaIV	GGNNCC	2 cut(s)	30, 349
NmuCI	GTSAC	2 cut(s)	161, 272
PagI	TCATGA	1 cut(s)	6
PciSI	GCTCTTC	2 cut(s)	76, 367
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	3 cut(s)	17, 92, 177
PflMI	CCANNNNNTGG	1 cut(s)	260
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PpuMI	RGGWCCY	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	302
PspN4I	GGNNCC	2 cut(s)	30, 349
PspPI	GGNCC	1 cut(s)	302
PspPPI	RGGWCCY	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SacI	GAGCTC	1 cut(s)	88
SapI	GCTCTTC	2 cut(s)	76, 367
Sau3AI	GATC	3 cut(s)	28, 37, 227
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	379
SduI	GDGCHC	2 cut(s)	88, 379
SetI	ASST	7 cut(s)	88, 163, 175, 194, 307, 325, 349
SfcI	CTRYAG	1 cut(s)	277
SinI	GGWCC	1 cut(s)	302
Sse9I	AATT	6 cut(s)	10, 69, 133, 148, 256, 267
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	157
TasI	AATT	6 cut(s)	10, 69, 133, 148, 256, 267
TfiI	GAWTC	3 cut(s)	17, 92, 177
TseFI	GTSAC	2 cut(s)	161, 272
Tsp45I	GTSAC	2 cut(s)	161, 272
TspDTI	ATGAA	4 cut(s)	23, 81, 161, 312
TspGWI	ACGGA	1 cut(s)	258
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	2 cut(s)	10, 148
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.