Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Reverse (-)

29828569 .. 29829813

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G024310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGACAGATGTTAGGCATAAGAAAGTTTTCCATCGAAAAGGAAATTTTACCGTCCAGGAAGATCAACTCTTGTGTGTTAATCAAAAGAAAGATAAAGTATGGGAAAGAATAACTGATTTGTGGAATAAGGATAAGGATGAACACCAGATGCGAAGTGCCAAGTCTCTTCAAAGTCGATTTTCTGATCTTAACTATTGCGTAAGCAAATTTCGTAGTTCACTTCGCCAGGTGGAAAATCGGAATCAAAGTGGTGCTTCAGAGAAAGATATTTATACCCAGGCAAAACAACATCTATTGGATGATCCTAACTATACAAAGAAGAAACTTCAATTTGATCATGTGTGGCCTATTCTCAAGGATGCTGAAAAATGGACCGATAATGTTACATTACCATTTGATGTCGATTTGAATGCAAATGAAGACGAACAAGAGCTGTTTAGTGATGAACTTGCCTCACCTCATCGGCCTATTGTTCATGAGGAATATGCATCTAAAAAATTAGCTATTCAACGTCAACGTGAGGAGAGCAAGATCATGCTTACTAGTTTGGATTCAATTACAGATCCAGAAGGACATGAGTACTTACGAATGAAAAAAACTGAAATAATGGAGAGAAGAGCTCATGCGTCCCAACTACAACAATCACCGGCAACATTGGGCTATGGTAATTTTGGATATGGACAACACTATGGAGGAGGAAGTGGTGGGTATGGACAACATTATGGAGGAACAGCTGGATATGGTGAAATTCCTCATTATGGAGGAAGTGGTGGATCTGGAACAAGTGGTGCACATGCAGGAGTGCAGCAATTCGGTGGTACCAGTGGATCCAATACACATGGTGGATATGGAGGAATGCCAGAACTTGGAGGAAGTAATGATAGTCTACCGGAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

299

Amino Acids

33.59

Weight (kDa)

6.27

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	818
AccB1I	GGYRCC	1 cut(s)	818
AccB7I	CCANNNNNTGG	1 cut(s)	866
AccI	GTMKAC	1 cut(s)	886
AclWI	GGATC	5 cut(s)	296, 557, 781, 822, 835
AcsI	RAATTY	3 cut(s)	43, 206, 747
AcuI	CTGAAG	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	842
AfaI	GTAC	2 cut(s)	581, 820
AfiI	CCNNNNNNNGG	2 cut(s)	758, 866
AgsI	TTSAA	5 cut(s)	170, 329, 409, 509, 555
AhlI	ACTAGT	1 cut(s)	542
AjnI	CCWGG	3 cut(s)	54, 225, 276
AluBI	AGCT	4 cut(s)	433, 503, 620, 734
AluI	AGCT	4 cut(s)	433, 503, 620, 734
Alw21I	GWGCWC	2 cut(s)	622, 793
Alw26I	GTCTC	1 cut(s)	168
Alw44I	GTGCAC	1 cut(s)	789
AlwI	GGATC	5 cut(s)	296, 557, 781, 822, 835
AoxI	GGCC	2 cut(s)	344, 464
ApaLI	GTGCAC	1 cut(s)	789
ApeKI	GCWGC	1 cut(s)	805
ApoI	RAATTY	3 cut(s)	43, 206, 747
Asp700I	GAANNNNTTC	1 cut(s)	26
Asp718I	GGTACC	1 cut(s)	818
AspS9I	GGNCC	1 cut(s)	372
AsuHPI	GGTGA	3 cut(s)	447, 636, 755
AvaII	GGWCC	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	793
BamHI	GGATCC	1 cut(s)	827
BanI	GGYRCC	1 cut(s)	818
BanII	GRGCYC	1 cut(s)	622
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	2 cut(s)	622, 793
BbvI	GCAGC	1 cut(s)	817
BccI	CCATC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	3 cut(s)	56, 227, 278
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	168
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	1 cut(s)	543
BisI	GCNGC	1 cut(s)	806
BlsI	GCNGC	1 cut(s)	807
BmcAI	AGTACT	1 cut(s)	581
Bme1390I	CCNGG	3 cut(s)	56, 227, 278
Bme18I	GGWCC	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	372
BmiI	GGNNCC	2 cut(s)	820, 829
BmrFI	CCNGG	3 cut(s)	56, 227, 278
BmsI	GCATC	3 cut(s)	138, 349, 497
BpiI	GAAGAC	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	604, 636
BpuEI	CTTGAG	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	889
Bsc4I	CCNNNNNNNGG	2 cut(s)	758, 866
Bse118I	RCCGGY	1 cut(s)	646
Bse1I	ACTGG	1 cut(s)	822
BseBI	CCWGG	3 cut(s)	56, 227, 278
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	3 cut(s)	142, 304, 364
BseLI	CCNNNNNNNGG	2 cut(s)	758, 866
BseNI	ACTGG	1 cut(s)	822
BseRI	GAGGAG	2 cut(s)	536, 708
BseSI	GKGCMC	1 cut(s)	793
BseXI	GCAGC	1 cut(s)	817
BsgI	GTGCAG	1 cut(s)	824
BshFI	GGCC	2 cut(s)	346, 466
BshNI	GGYRCC	1 cut(s)	818
BsiHKAI	GWGCWC	2 cut(s)	622, 793
BsiSI	CCGG	2 cut(s)	647, 890
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	758, 866
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	613
BsmI	GAATGC	2 cut(s)	415, 861
BsnI	GGCC	2 cut(s)	346, 466
Bsp1286I	GDGCHC	2 cut(s)	622, 793
Bsp143I	GATC	8 cut(s)	61, 184, 301, 334, 531, 562, 773, 827
BspANI	GGCC	2 cut(s)	346, 466
BspHI	TCATGA	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	820, 829
BspPI	GGATC	5 cut(s)	296, 557, 781, 822, 835
BspQI	GCTCTTC	1 cut(s)	610
BspT107I	GGYRCC	1 cut(s)	818
BsrFI	RCCGGY	1 cut(s)	646
BsrI	ACTGG	1 cut(s)	822
BssAI	RCCGGY	1 cut(s)	646
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	8 cut(s)	61, 184, 301, 334, 531, 562, 773, 827
Bst2UI	CCWGG	3 cut(s)	56, 227, 278
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	171, 610
BstF5I	GGATG	3 cut(s)	142, 304, 364
BstKTI	GATC	8 cut(s)	64, 187, 304, 337, 534, 565, 776, 830
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	8 cut(s)	61, 184, 301, 334, 531, 562, 773, 827
BstNI	CCWGG	3 cut(s)	56, 227, 278
BstNSI	RCATGY	1 cut(s)	797
BstSCI	CCNGG	3 cut(s)	54, 225, 276
BstSLI	GKGCMC	1 cut(s)	793
BstV1I	GCAGC	1 cut(s)	817
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	3 cut(s)	562, 773, 827
BstYI	RGATCY	3 cut(s)	562, 773, 827
BsuRI	GGCC	2 cut(s)	346, 466
BtsCI	GGATG	3 cut(s)	142, 304, 364
BtsIMutI	CAGTG	1 cut(s)	829
CciI	TCATGA	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	646
Cfr13I	GGNCC	1 cut(s)	372
CseI	GACGC	1 cut(s)	615
Csp6I	GTAC	2 cut(s)	580, 819
CviAII	CATG	7 cut(s)	338, 476, 535, 575, 623, 794, 839
CviJI	RGCY	7 cut(s)	346, 433, 466, 503, 620, 660, 734
CviKI_1	RGCY	7 cut(s)	346, 433, 466, 503, 620, 660, 734
CviQI	GTAC	2 cut(s)	580, 819
DpnI	GATC	8 cut(s)	63, 186, 303, 336, 533, 564, 775, 829
DpnII	GATC	8 cut(s)	61, 184, 301, 334, 531, 562, 773, 827
DraIII	CACNNNGTG	1 cut(s)	842
Eam1104I	CTCTTC	2 cut(s)	171, 610
EarI	CTCTTC	2 cut(s)	171, 610
Ecl136II	GAGCTC	1 cut(s)	620
Eco24I	GRGCYC	1 cut(s)	622
Eco47I	GGWCC	1 cut(s)	372
Eco53kI	GAGCTC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	620
EcoRII	CCWGG	3 cut(s)	54, 225, 276
EcoT22I	ATGCAT	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	622
FaeI	CATG	7 cut(s)	341, 479, 538, 578, 626, 797, 842
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	7 cut(s)	337, 475, 534, 574, 622, 793, 838
FbaI	TGATCA	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	886
Fnu4HI	GCNGC	1 cut(s)	806
FokI	GGATG	3 cut(s)	149, 311, 371
FriOI	GRGCYC	1 cut(s)	622
Fsp4HI	GCNGC	1 cut(s)	806
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	1 cut(s)	806
HaeIII	GGCC	2 cut(s)	346, 466
HapII	CCGG	2 cut(s)	647, 890
HgaI	GACGC	1 cut(s)	615
Hin1II	CATG	7 cut(s)	341, 479, 538, 578, 626, 797, 842
HincII	GTYRAC	1 cut(s)	515
HindII	GTYRAC	1 cut(s)	515
HinfI	GANTC	2 cut(s)	241, 551
HpaII	CCGG	2 cut(s)	647, 890
HphI	GGTGA	3 cut(s)	447, 636, 755
Hpy166II	GTNNAC	4 cut(s)	218, 515, 791, 887
Hpy188I	TCNGA	3 cut(s)	184, 240, 259
Hpy188III	TCNNGA	3 cut(s)	476, 566, 777
Hpy8I	GTNNAC	4 cut(s)	218, 515, 791, 887
HpyAV	CCTTC	1 cut(s)	563
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	2 cut(s)	511, 517
HpyCH4V	TGCA	5 cut(s)	413, 488, 791, 797, 805
HpySE526I	ACGT	2 cut(s)	511, 517
Hsp92II	CATG	7 cut(s)	341, 479, 538, 578, 626, 797, 842
KpnI	GGTACC	1 cut(s)	822
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	8 cut(s)	61, 184, 301, 334, 531, 562, 773, 827
LguI	GCTCTTC	1 cut(s)	610
Lsp1109I	GCAGC	1 cut(s)	817
LweI	GCATC	3 cut(s)	138, 349, 497
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	2 cut(s)	511, 517
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	8 cut(s)	63, 186, 303, 336, 533, 564, 775, 829
MboI	GATC	8 cut(s)	61, 184, 301, 334, 531, 562, 773, 827
MboII	GAAGA	5 cut(s)	71, 158, 331, 431, 627
MflI	RGATCY	3 cut(s)	562, 773, 827
MhlI	GDGCHC	2 cut(s)	622, 793
MluCI	AATT	8 cut(s)	43, 206, 329, 497, 555, 667, 747, 809
Mph1103I	ATGCAT	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	2 cut(s)	78, 189
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	2 cut(s)	647, 890
MspR9I	CCNGG	3 cut(s)	56, 227, 278
Mva1269I	GAATGC	2 cut(s)	415, 861
MvaI	CCWGG	3 cut(s)	56, 227, 278
NdeII	GATC	8 cut(s)	61, 184, 301, 334, 531, 562, 773, 827
NlaIII	CATG	7 cut(s)	341, 479, 538, 578, 626, 797, 842
NlaIV	GGNNCC	2 cut(s)	820, 829
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	1 cut(s)	797
PagI	TCATGA	1 cut(s)	475
PciSI	GCTCTTC	1 cut(s)	610
PctI	GAATGC	2 cut(s)	415, 861
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	241, 551
PflMI	CCANNNNNTGG	1 cut(s)	866
PfoI	TCCNGGA	1 cut(s)	54
PkrI	GCNGC	1 cut(s)	807
Psp124BI	GAGCTC	1 cut(s)	622
Psp6I	CCWGG	3 cut(s)	54, 225, 276
PspGI	CCWGG	3 cut(s)	54, 225, 276
PspN4I	GGNNCC	2 cut(s)	820, 829
PspPI	GGNCC	1 cut(s)	372
PsuI	RGATCY	3 cut(s)	562, 773, 827
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	2 cut(s)	581, 820
RsaNI	GTAC	2 cut(s)	580, 819
SacI	GAGCTC	1 cut(s)	622
SapI	GCTCTTC	1 cut(s)	610
SaqAI	TTAA	2 cut(s)	78, 189
SatI	GCNGC	1 cut(s)	806
Sau3AI	GATC	8 cut(s)	61, 184, 301, 334, 531, 562, 773, 827
Sau96I	GGNCC	1 cut(s)	372
ScaI	AGTACT	1 cut(s)	581
ScrFI	CCNGG	3 cut(s)	56, 227, 278
SduI	GDGCHC	2 cut(s)	622, 793
SetI	ASST	8 cut(s)	231, 435, 460, 505, 514, 520, 622, 736
SfaNI	GCATC	3 cut(s)	138, 349, 497
SinI	GGWCC	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	8 cut(s)	43, 206, 329, 497, 555, 667, 747, 809
SspMI	CTAG	1 cut(s)	543
SstI	GAGCTC	1 cut(s)	622
StyD4I	CCNGG	3 cut(s)	54, 225, 276
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	2 cut(s)	514, 520
TaqI	TCGA	3 cut(s)	34, 175, 402
TaqII	GACCGA	1 cut(s)	389
TasI	AATT	8 cut(s)	43, 206, 329, 497, 555, 667, 747, 809
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	2 cut(s)	241, 551
Tru1I	TTAA	2 cut(s)	78, 189
Tru9I	TTAA	2 cut(s)	78, 189
TscAI	CASTG	1 cut(s)	829
TseI	GCWGC	1 cut(s)	805
TspDTI	ATGAA	5 cut(s)	153, 432, 459, 464, 605
TspRI	CASTG	1 cut(s)	829
Van91I	CCANNNNNTGG	1 cut(s)	866
VneI	GTGCAC	1 cut(s)	789
VpaK11BI	GGWCC	1 cut(s)	372
XapI	RAATTY	3 cut(s)	43, 206, 747
XceI	RCATGY	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	886
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	543
ZrmI	AGTACT	1 cut(s)	581
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.