Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006410.1

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Reverse (-)

104762 .. 106004

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006410.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atgtcttcttctaggcgtggattgaattttaccgtagaagaagatctacaattgtgccatgtttatcttgatatttctcaatgtccaattaatggtattaaccacaaaaaggatgcactatgggagaggattgctgctatctacaatgaaggcaagtctgaggaaagtagtcgatctggtgggtcgcttcaaagtcaattttctgatctatgcttaccggtcagtaaacttcgtggtcatattcgacaaattgagtaccaaaatccaagtggtgcatcagagtcctatattaaaaagtttcaatttgaccatgtgtggcccattctaaaaaatgctgagaaatggcttgataatgctgccatgaccgctcctaaacctcgtagaaggaaggagtcatctgaaggatctcaatcaggttctcgcacatcaaggatatctgatactccatcgttttctgttgatttaaatgcagatgaagatgagaaagagtacatcaacaatgaagttgcttcacatgatcgtcccatgggaacaaggatggcaaagatgaaaaggaaagccaccgatgagaagaaaaagaattatgataagatcatggccgataaccaagcaataaaagagttacttgaaaaaagtatgctggacagatcaagcttcgcttccaagtttgaccattacacgtcaagcaaattggatattcaacgtcagcgcgaagagaataaaatcatgctgaccaatttggattccataatagatccaacagaccgtgaattctggaagatgaggaaggcagaagttatgcaaagaagagctcgtgagtctcaatcacaaggatcaccacctactacatttggctatggtaactttagtaaccttaaccagtttcaaagtggttctgaagctatatttcattctggaaattttggtagtcctttacaattttcaagtggattcggaggaagtggtgggagtggaggagtaccacatgctggaggaagtagcgggggaggagtgcctgagtacaatgaaagtggtggattcggaacaagcgatggttatggaggaagtgatgctaatctaccggaacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

363

Amino Acids

40.33

Weight (kDa)

6.53

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	92, 989
AccBSI	CCGCTC	1 cut(s)	368
AccII	CGCG	1 cut(s)	711
AciI	CCGC	2 cut(s)	366, 1002
AclWI	GGATC	3 cut(s)	412, 749, 841
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	3 cut(s)	25, 770, 919
AcuI	CTGAAG	2 cut(s)	420, 918
AfaI	GTAC	4 cut(s)	257, 491, 981, 1022
AfiI	CCNNNNNNNGG	3 cut(s)	92, 109, 989
AflIII	ACRYGT	1 cut(s)	678
AgeI	ACCGGT	1 cut(s)	217
AgsI	TTSAA	7 cut(s)	25, 191, 302, 629, 701, 887, 945
AjiI	CACGTC	1 cut(s)	681
AluBI	AGCT	3 cut(s)	654, 812, 902
AluI	AGCT	3 cut(s)	654, 812, 902
Alw21I	GWGCWC	1 cut(s)	814
Alw26I	GTCTC	1 cut(s)	825
AlwI	GGATC	3 cut(s)	412, 749, 841
AoxI	GGCC	2 cut(s)	317, 597
ApeKI	GCWGC	2 cut(s)	134, 356
ApoI	RAATTY	3 cut(s)	25, 770, 919
AseI	ATTAAT	1 cut(s)	90
AsiGI	ACCGGT	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	711
AspS9I	GGNCC	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	828
BanII	GRGCYC	1 cut(s)	814
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BauI	CACGAG	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	814
BbvI	GCAGC	2 cut(s)	121, 343
BccI	CCATC	3 cut(s)	454, 532, 1046
BcoDI	GTCTC	1 cut(s)	825
BfaI	CTAG	2 cut(s)	12, 1090
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	2 cut(s)	135, 357
BlsI	GCNGC	2 cut(s)	136, 358
BmgBI	CACGTC	1 cut(s)	681
BmgT120I	GGNCC	1 cut(s)	318
BmsI	GCATC	3 cut(s)	103, 284, 1060
BpmI	CTGGAG	1 cut(s)	1011
BsaBI	GATNNNNATC	2 cut(s)	409, 1074
BsaJI	CCNNGG	1 cut(s)	525
BsaWI	WCCGGW	2 cut(s)	217, 1081
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 109, 989
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	880
Bse8I	GATNNNNATC	2 cut(s)	409, 1074
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	2 cut(s)	118, 543
BseJI	GATNNNNATC	2 cut(s)	409, 1074
BseLI	CCNNNNNNNGG	3 cut(s)	92, 109, 989
BseMII	CTCAG	3 cut(s)	150, 327, 1008
BseNI	ACTGG	1 cut(s)	880
BseRI	GAGGAG	2 cut(s)	990, 1023
BseXI	GCAGC	2 cut(s)	121, 343
Bsh1236I	CGCG	1 cut(s)	711
BshFI	GGCC	2 cut(s)	319, 599
BshTI	ACCGGT	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	814
BsiSI	CCGG	2 cut(s)	218, 1082
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	3 cut(s)	92, 109, 989
BsmAI	GTCTC	1 cut(s)	825
BsmFI	GGGAC	1 cut(s)	507
BsnI	GGCC	2 cut(s)	319, 599
Bsp1286I	GDGCHC	1 cut(s)	814
Bsp143I	GATC	9 cut(s)	43, 173, 205, 404, 517, 591, 647, 754, 833
Bsp19I	CCATGG	1 cut(s)	525
BspACI	CCGC	2 cut(s)	366, 1002
BspANI	GGCC	2 cut(s)	319, 599
BspCNI	CTCAG	3 cut(s)	151, 328, 1009
BspFNI	CGCG	1 cut(s)	711
BspPI	GGATC	3 cut(s)	412, 749, 841
BspQI	GCTCTTC	1 cut(s)	802
BsrBI	CCGCTC	1 cut(s)	368
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	880
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	9 cut(s)	43, 173, 205, 404, 517, 591, 647, 754, 833
BssSI	CACGAG	1 cut(s)	813
BssT1I	CCWWGG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	813
Bst4CI	ACNGT	2 cut(s)	34, 767
Bst6I	CTCTTC	2 cut(s)	708, 802
BstDEI	CTNAG	3 cut(s)	159, 336, 1017
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	2 cut(s)	118, 543
BstFNI	CGCG	1 cut(s)	711
BstHHI	GCGC	1 cut(s)	711
BstKTI	GATC	9 cut(s)	46, 176, 208, 407, 520, 594, 650, 757, 836
BstMAI	GTCTC	1 cut(s)	825
BstMBI	GATC	9 cut(s)	43, 173, 205, 404, 517, 591, 647, 754, 833
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	989
BstUI	CGCG	1 cut(s)	711
BstV1I	GCAGC	2 cut(s)	121, 343
BstX2I	RGATCY	3 cut(s)	43, 404, 754
BstYI	RGATCY	3 cut(s)	43, 404, 754
BsuRI	GGCC	2 cut(s)	319, 599
BtgI	CCRYGG	1 cut(s)	525
BtgZI	GCGATG	1 cut(s)	1065
BtrI	CACGTC	1 cut(s)	681
BtsCI	GGATG	2 cut(s)	118, 543
CfoI	GCGC	1 cut(s)	711
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	318
Csp6I	GTAC	4 cut(s)	256, 490, 980, 1021
CspAI	ACCGGT	1 cut(s)	217
CspCI	CAANNNNNGTGG	2 cut(s)	1012, 1047
CviAII	CATG	8 cut(s)	59, 311, 361, 515, 526, 595, 727, 986
CviJI	RGCY	8 cut(s)	319, 346, 560, 599, 654, 812, 855, 902
CviKI_1	RGCY	8 cut(s)	319, 346, 560, 599, 654, 812, 855, 902
CviQI	GTAC	4 cut(s)	256, 490, 980, 1021
DdeI	CTNAG	3 cut(s)	159, 336, 1017
DpnI	GATC	9 cut(s)	45, 175, 207, 406, 519, 593, 649, 756, 835
DpnII	GATC	9 cut(s)	43, 173, 205, 404, 517, 591, 647, 754, 833
DraI	TTTAAA	1 cut(s)	465
EaeI	YGGCCR	1 cut(s)	597
Eam1104I	CTCTTC	2 cut(s)	708, 802
EarI	CTCTTC	2 cut(s)	708, 802
Ecl136II	GAGCTC	1 cut(s)	812
Eco130I	CCWWGG	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	814
Eco32I	GATATC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	812
Eco57I	CTGAAG	2 cut(s)	420, 918
EcoICRI	GAGCTC	1 cut(s)	812
EcoRI	GAATTC	1 cut(s)	770
EcoRV	GATATC	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	814
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	8 cut(s)	62, 314, 364, 518, 529, 598, 730, 989
FalI	AAGNNNNNCTT	4 cut(s)	609, 641, 643, 675
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	8 cut(s)	58, 310, 360, 514, 525, 594, 726, 985
FauI	CCCGC	1 cut(s)	995
Fnu4HI	GCNGC	2 cut(s)	135, 357
FokI	GGATG	2 cut(s)	125, 550
FriOI	GRGCYC	1 cut(s)	814
Fsp4HI	GCNGC	2 cut(s)	135, 357
FspBI	CTAG	2 cut(s)	12, 1090
GlaI	GCGC	1 cut(s)	710
GluI	GCNGC	2 cut(s)	135, 357
GsuI	CTGGAG	1 cut(s)	1011
HaeIII	GGCC	2 cut(s)	319, 599
HapII	CCGG	2 cut(s)	218, 1082
HhaI	GCGC	1 cut(s)	711
Hin1II	CATG	8 cut(s)	62, 314, 364, 518, 529, 598, 730, 989
Hin6I	GCGC	1 cut(s)	709
HinP1I	GCGC	1 cut(s)	709
HindIII	AAGCTT	1 cut(s)	652
HinfI	GANTC	6 cut(s)	281, 392, 743, 818, 951, 1038
HpaII	CCGG	2 cut(s)	218, 1082
HphI	GGTGA	1 cut(s)	828
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	8 cut(s)	160, 205, 280, 400, 439, 898, 956, 1043
Hpy188III	TCNNGA	4 cut(s)	68, 775, 815, 915
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	5 cut(s)	143, 378, 382, 395, 781
HpyCH4III	ACNGT	2 cut(s)	34, 767
HpyCH4IV	ACGT	2 cut(s)	680, 703
HpyCH4V	TGCA	4 cut(s)	116, 275, 470, 802
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	3 cut(s)	159, 336, 1017
HpySE526I	ACGT	2 cut(s)	680, 703
Hsp92II	CATG	8 cut(s)	62, 314, 364, 518, 529, 598, 730, 989
HspAI	GCGC	1 cut(s)	709
Kzo9I	GATC	9 cut(s)	43, 173, 205, 404, 517, 591, 647, 754, 833
LguI	GCTCTTC	1 cut(s)	802
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	9 cut(s)	162, 231, 399, 626, 760, 893, 900, 975, 1029
Lsp1109I	GCAGC	2 cut(s)	121, 343
LweI	GCATC	3 cut(s)	103, 284, 1060
MaeI	CTAG	2 cut(s)	12, 1090
MaeII	ACGT	2 cut(s)	680, 703
MaeIII	GTNAC	3 cut(s)	621, 860, 869
MalI	GATC	9 cut(s)	45, 175, 207, 406, 519, 593, 649, 756, 835
MbiI	CCGCTC	1 cut(s)	368
MboI	GATC	9 cut(s)	43, 173, 205, 404, 517, 591, 647, 754, 833
MboII	GAAGA	7 cut(s)	50, 53, 488, 583, 725, 790, 819
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	3 cut(s)	43, 404, 754
MhlI	GDGCHC	1 cut(s)	814
MlyI	GAGTC	3 cut(s)	290, 401, 827
MmeI	TCCRAC	1 cut(s)	782
MnlI	CCTC	9 cut(s)	120, 154, 387, 777, 950, 968, 986, 1001, 1055
MseI	TTAA	5 cut(s)	90, 99, 291, 464, 876
MspI	CCGG	2 cut(s)	218, 1082
MunI	CAATTG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	9 cut(s)	43, 173, 205, 404, 517, 591, 647, 754, 833
NlaIII	CATG	8 cut(s)	62, 314, 364, 518, 529, 598, 730, 989
NspI	RCATGY	1 cut(s)	989
PciSI	GCTCTTC	1 cut(s)	802
PcsI	WCGNNNNNNNCGW	1 cut(s)	1047
PfeI	GAWTC	3 cut(s)	743, 951, 1038
PflMI	CCANNNNNTGG	2 cut(s)	92, 989
PinAI	ACCGGT	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	136, 358
PleI	GAGTC	3 cut(s)	289, 400, 826
PpsI	GAGTC	3 cut(s)	289, 400, 826
PshBI	ATTAAT	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	814
PspPI	GGNCC	1 cut(s)	318
PsuI	RGATCY	3 cut(s)	43, 404, 754
RsaI	GTAC	4 cut(s)	257, 491, 981, 1022
RsaNI	GTAC	4 cut(s)	256, 490, 980, 1021
SacI	GAGCTC	1 cut(s)	814
SapI	GCTCTTC	1 cut(s)	802
SaqAI	TTAA	5 cut(s)	90, 99, 291, 464, 876
SatI	GCNGC	2 cut(s)	135, 357
Sau3AI	GATC	9 cut(s)	43, 173, 205, 404, 517, 591, 647, 754, 833
Sau96I	GGNCC	1 cut(s)	318
SchI	GAGTC	3 cut(s)	290, 401, 827
SduI	GDGCHC	1 cut(s)	814
SetI	ASST	9 cut(s)	379, 418, 656, 683, 706, 814, 844, 876, 904
SfaNI	GCATC	3 cut(s)	103, 284, 1060
SmiI	ATTTAAAT	1 cut(s)	465
SsiI	CCGC	2 cut(s)	366, 1002
SspMI	CTAG	2 cut(s)	12, 1090
SstI	GAGCTC	1 cut(s)	814
StyI	CCWWGG	1 cut(s)	525
SwaI	ATTTAAAT	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	34, 767
TaiI	ACGT	2 cut(s)	683, 706
TaqI	TCGA	2 cut(s)	172, 244
TatI	WGTACW	2 cut(s)	489, 1020
TfiI	GAWTC	3 cut(s)	743, 951, 1038
Tru1I	TTAA	5 cut(s)	90, 99, 291, 464, 876
Tru9I	TTAA	5 cut(s)	90, 99, 291, 464, 876
TseI	GCWGC	2 cut(s)	134, 356
TspDTI	ATGAA	6 cut(s)	162, 489, 516, 563, 899, 1041
Van91I	CCANNNNNTGG	2 cut(s)	92, 989
VspI	ATTAAT	1 cut(s)	90
XapI	RAATTY	3 cut(s)	25, 770, 919
XceI	RCATGY	1 cut(s)	989
XcmI	CCANNNNNNNNNTGG	2 cut(s)	266, 887
XspI	CTAG	2 cut(s)	12, 1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.