Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8323109.1

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Forward (+)

482 .. 784

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8323109.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgagaacgaagatgacaaagatgaaaaggaaagccaccgatgagaagaaaaagaattatgataagatcatggccaacaaccaagcaataaaagagttacttgaaaaaatgaggttggagagatcaagcttcacttccaagtttgaccattacatgtcaagcaaactggatattcaacgtcagggcaatgagaataaaaccgcatgccctaaacatcacctccaacacctgattcccttgttcagtccgtccaataatcagcggatacaatactgcactgacactttgagtaattcctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

11.81

Weight (kDa)

9.87

Isoelectric Point (pI)

64.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	201, 262
AcoI	YGGCCR	1 cut(s)	72
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	104, 176
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
AoxI	GGCC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	74
BciVI	GTATCC	1 cut(s)	258
BfuI	GTATCC	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	171
BsgI	GTGCAG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	66, 122
BspACI	CCGC	2 cut(s)	201, 262
BspANI	GGCC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	66, 122
BstC8I	GCNNGC	1 cut(s)	205
BstKTI	GATC	2 cut(s)	69, 125
BstMBI	GATC	2 cut(s)	66, 122
BstNSI	RCATGY	2 cut(s)	157, 207
BsuI	GTATCC	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	205
CviAII	CATG	3 cut(s)	70, 154, 204
CviJI	RGCY	3 cut(s)	35, 74, 129
CviKI_1	RGCY	3 cut(s)	35, 74, 129
DpnI	GATC	2 cut(s)	68, 124
DpnII	GATC	2 cut(s)	66, 122
EaeI	YGGCCR	1 cut(s)	72
FaeI	CATG	3 cut(s)	73, 157, 207
FaiI	YATR	5 cut(s)	60, 71, 155, 205, 301
FalI	AAGNNNNNCTT	4 cut(s)	84, 116, 118, 150
FatI	CATG	3 cut(s)	69, 153, 203
HaeIII	GGCC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	73, 157, 207
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	1 cut(s)	232
HphI	GGTGA	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	3 cut(s)	73, 157, 207
Kzo9I	GATC	2 cut(s)	66, 122
LpnPI	CCDG	3 cut(s)	152, 167, 242
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	2 cut(s)	68, 124
MboI	GATC	2 cut(s)	66, 122
MboII	GAAGA	2 cut(s)	22, 58
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	2 cut(s)	55, 292
MluNI	TGGCCA	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	96, 247
MnlI	CCTC	2 cut(s)	105, 230
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	262
NdeII	GATC	2 cut(s)	66, 122
NlaIII	CATG	3 cut(s)	73, 157, 207
NspI	RCATGY	2 cut(s)	157, 207
PaeI	GCATGC	1 cut(s)	207
PciI	ACATGT	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	232
PscI	ACATGT	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	66, 122
SetI	ASST	5 cut(s)	116, 131, 181, 222, 231
SphI	GCATGC	1 cut(s)	207
Sse9I	AATT	2 cut(s)	55, 292
SsiI	CCGC	2 cut(s)	201, 262
TaiI	ACGT	1 cut(s)	181
TasI	AATT	2 cut(s)	55, 292
TfiI	GAWTC	1 cut(s)	232
TscAI	CASTG	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	283
XceI	RCATGY	2 cut(s)	157, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.