Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000149.1

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Forward (+)

113842 .. 115084

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000149.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atgtcttcttctaggcgtggattgaattttaccgtagaagaagatctacaattgtgccatgtttatcttgatatttctcaatgtccaattaatggtattaaccacaaaaaggatgcactatgggagaggattgctgctatctacaatgaaggcaagtccgaggaaaggagtcgatctggtgggtcgcttcaaagtcgattttctgatctatgcttaccggtcagtaaacttcgtggtcatattcgacaaattgagtaccaaaatccaagtggtgcatcagagtcctatattttcaagaaagctaaggaatctctcctagatgattcaacttataagaagaaaaagtttcaatttgaccatgtgtggcccattctaaaaaatgctgagaaatggcttgataatgctgccatgaccgctcctaaacctcgtagaaggaaggagtcatctgaaggatctcaatcaggttctcgcacatcaaggacagctgatactccatcgttttctattgatttaaatgcagatgaagatgagcaagagtacatcaacgatgaagttgcttcacatgatcgtcccatgggaacgaggatggcaaagatgaaaaggaaagccaccgatgagaagaaaaagaattatgataagatcatggccgataaccaagcaataaaagagttacttgaaaaaagtatgctggagagatcaagcttcgcttccaagtttgaccattacacgtcaagcaaattggatattcaacgtcagcgcgaagagaataaaatcatgctgaccaatttggattccataatagatccaacagaccgtgaattctggaagatgaggaaggcagaagttatgcaaagaagagctcgtgagtctaaatcacaaggatcaccacctactacatttggctatggtaactttagtaacctgaaccagtttcaaagtggttctgaagctacatttcattctggaaattttggtagtcctttacaattttcaagtggattcggaggaagtggtgggagtggaggagtaccacatgctggaggaagtagcggtggaggagtgcctgagtacaatgaaagtggtggattcggaacaagcgatggttatggaggaagtgatgctaatctaccggaatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

379

Amino Acids

42.32

Weight (kDa)

7.69

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AccB7I	CCANNNNNTGG	2 cut(s)	92, 1037
AccBSI	CCGCTC	1 cut(s)	416
AccII	CGCG	1 cut(s)	759
AciI	CCGC	2 cut(s)	414, 1050
AclWI	GGATC	3 cut(s)	460, 797, 889
AcoI	YGGCCR	1 cut(s)	645
AcsI	RAATTY	3 cut(s)	25, 818, 967
AcuI	CTGAAG	2 cut(s)	468, 966
AfaI	GTAC	4 cut(s)	257, 539, 1029, 1070
AfiI	CCNNNNNNNGG	4 cut(s)	92, 109, 165, 1037
AflIII	ACRYGT	1 cut(s)	726
AgeI	ACCGGT	1 cut(s)	217
AgsI	TTSAA	9 cut(s)	25, 191, 295, 327, 350, 677, 749, 935, 993
AjiI	CACGTC	1 cut(s)	729
AluBI	AGCT	5 cut(s)	302, 485, 702, 860, 950
AluI	AGCT	5 cut(s)	302, 485, 702, 860, 950
Alw21I	GWGCWC	1 cut(s)	862
AlwI	GGATC	3 cut(s)	460, 797, 889
AoxI	GGCC	2 cut(s)	365, 645
ApeKI	GCWGC	2 cut(s)	134, 404
ApoI	RAATTY	3 cut(s)	25, 818, 967
AseI	ATTAAT	1 cut(s)	90
AsiGI	ACCGGT	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	759
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	876
BanII	GRGCYC	1 cut(s)	862
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BauI	CACGAG	1 cut(s)	861
Bbv12I	GWGCWC	1 cut(s)	862
BbvI	GCAGC	2 cut(s)	121, 391
BccI	CCATC	3 cut(s)	502, 580, 1094
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BfaI	CTAG	3 cut(s)	12, 317, 1138
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	2 cut(s)	135, 405
BlsI	GCNGC	2 cut(s)	136, 406
BmgBI	CACGTC	1 cut(s)	729
BmgT120I	GGNCC	1 cut(s)	366
BmsI	GCATC	3 cut(s)	103, 284, 1108
BpmI	CTGGAG	2 cut(s)	710, 1059
Bpu10I	CCTNAGC	1 cut(s)	303
BsaBI	GATNNNNATC	2 cut(s)	457, 1122
BsaJI	CCNNGG	2 cut(s)	159, 573
BsaWI	WCCGGW	2 cut(s)	217, 1129
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 109, 165, 1037
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	928
Bse8I	GATNNNNATC	2 cut(s)	457, 1122
BseDI	CCNNGG	2 cut(s)	159, 573
BseGI	GGATG	2 cut(s)	118, 591
BseJI	GATNNNNATC	2 cut(s)	457, 1122
BseLI	CCNNNNNNNGG	4 cut(s)	92, 109, 165, 1037
BseMII	CTCAG	2 cut(s)	375, 1056
BseNI	ACTGG	1 cut(s)	928
BseRI	GAGGAG	2 cut(s)	1038, 1071
BseXI	GCAGC	2 cut(s)	121, 391
Bsh1236I	CGCG	1 cut(s)	759
BshFI	GGCC	2 cut(s)	367, 647
BshTI	ACCGGT	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	862
BsiSI	CCGG	2 cut(s)	218, 1130
BslFI	GGGAC	1 cut(s)	555
BslI	CCNNNNNNNGG	4 cut(s)	92, 109, 165, 1037
BsmFI	GGGAC	1 cut(s)	555
BsnI	GGCC	2 cut(s)	367, 647
Bsp1286I	GDGCHC	1 cut(s)	862
Bsp143I	GATC	9 cut(s)	43, 173, 205, 452, 565, 639, 695, 802, 881
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	2 cut(s)	414, 1050
BspANI	GGCC	2 cut(s)	367, 647
BspCNI	CTCAG	2 cut(s)	376, 1057
BspFNI	CGCG	1 cut(s)	759
BspPI	GGATC	3 cut(s)	460, 797, 889
BspQI	GCTCTTC	1 cut(s)	850
BsrBI	CCGCTC	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	928
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	159, 573
BssMI	GATC	9 cut(s)	43, 173, 205, 452, 565, 639, 695, 802, 881
BssSI	CACGAG	1 cut(s)	861
BssT1I	CCWWGG	1 cut(s)	573
Bst2BI	CACGAG	1 cut(s)	861
Bst4CI	ACNGT	2 cut(s)	34, 815
Bst6I	CTCTTC	2 cut(s)	756, 850
BstDEI	CTNAG	3 cut(s)	303, 384, 1065
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	2 cut(s)	118, 591
BstFNI	CGCG	1 cut(s)	759
BstHHI	GCGC	1 cut(s)	759
BstKTI	GATC	9 cut(s)	46, 176, 208, 455, 568, 642, 698, 805, 884
BstMBI	GATC	9 cut(s)	43, 173, 205, 452, 565, 639, 695, 802, 881
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNSI	RCATGY	1 cut(s)	1037
BstUI	CGCG	1 cut(s)	759
BstV1I	GCAGC	2 cut(s)	121, 391
BstX2I	RGATCY	3 cut(s)	43, 452, 802
BstYI	RGATCY	3 cut(s)	43, 452, 802
BsuRI	GGCC	2 cut(s)	367, 647
BtgI	CCRYGG	1 cut(s)	573
BtgZI	GCGATG	1 cut(s)	1113
BtrI	CACGTC	1 cut(s)	729
BtsCI	GGATG	2 cut(s)	118, 591
CfoI	GCGC	1 cut(s)	759
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	366
Csp6I	GTAC	4 cut(s)	256, 538, 1028, 1069
CspAI	ACCGGT	1 cut(s)	217
CspCI	CAANNNNNGTGG	2 cut(s)	1060, 1095
CviAII	CATG	8 cut(s)	59, 359, 409, 563, 574, 643, 775, 1034
CviQI	GTAC	4 cut(s)	256, 538, 1028, 1069
DdeI	CTNAG	3 cut(s)	303, 384, 1065
DpnI	GATC	9 cut(s)	45, 175, 207, 454, 567, 641, 697, 804, 883
DpnII	GATC	9 cut(s)	43, 173, 205, 452, 565, 639, 695, 802, 881
DraI	TTTAAA	1 cut(s)	513
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	2 cut(s)	756, 850
EarI	CTCTTC	2 cut(s)	756, 850
Ecl136II	GAGCTC	1 cut(s)	860
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	862
Eco53kI	GAGCTC	1 cut(s)	860
Eco57I	CTGAAG	2 cut(s)	468, 966
EcoICRI	GAGCTC	1 cut(s)	860
EcoRI	GAATTC	1 cut(s)	818
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	862
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	8 cut(s)	62, 362, 412, 566, 577, 646, 778, 1037
FalI	AAGNNNNNCTT	4 cut(s)	657, 689, 691, 723
FaqI	GGGAC	1 cut(s)	555
FatI	CATG	8 cut(s)	58, 358, 408, 562, 573, 642, 774, 1033
Fnu4HI	GCNGC	2 cut(s)	135, 405
FokI	GGATG	2 cut(s)	125, 598
FriOI	GRGCYC	1 cut(s)	862
Fsp4HI	GCNGC	2 cut(s)	135, 405
FspBI	CTAG	3 cut(s)	12, 317, 1138
GlaI	GCGC	1 cut(s)	758
GluI	GCNGC	2 cut(s)	135, 405
GsuI	CTGGAG	2 cut(s)	710, 1059
HaeIII	GGCC	2 cut(s)	367, 647
HapII	CCGG	2 cut(s)	218, 1130
HhaI	GCGC	1 cut(s)	759
Hin1II	CATG	8 cut(s)	62, 362, 412, 566, 577, 646, 778, 1037
Hin6I	GCGC	1 cut(s)	757
HinP1I	GCGC	1 cut(s)	757
HindIII	AAGCTT	1 cut(s)	700
HinfI	GANTC	9 cut(s)	169, 281, 308, 323, 440, 791, 866, 999, 1086
HpaII	CCGG	2 cut(s)	218, 1130
HphI	GGTGA	1 cut(s)	876
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	7 cut(s)	160, 205, 280, 448, 946, 1004, 1091
Hpy188III	TCNNGA	5 cut(s)	68, 295, 823, 863, 963
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	5 cut(s)	143, 426, 430, 443, 829
HpyCH4III	ACNGT	2 cut(s)	34, 815
HpyCH4IV	ACGT	2 cut(s)	728, 751
HpyCH4V	TGCA	4 cut(s)	116, 275, 518, 850
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	3 cut(s)	303, 384, 1065
HpySE526I	ACGT	2 cut(s)	728, 751
Hsp92II	CATG	8 cut(s)	62, 362, 412, 566, 577, 646, 778, 1037
HspAI	GCGC	1 cut(s)	757
Kzo9I	GATC	9 cut(s)	43, 173, 205, 452, 565, 639, 695, 802, 881
LguI	GCTCTTC	1 cut(s)	850
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	2 cut(s)	121, 391
LweI	GCATC	3 cut(s)	103, 284, 1108
MaeI	CTAG	3 cut(s)	12, 317, 1138
MaeII	ACGT	2 cut(s)	728, 751
MaeIII	GTNAC	3 cut(s)	669, 908, 917
MalI	GATC	9 cut(s)	45, 175, 207, 454, 567, 641, 697, 804, 883
MbiI	CCGCTC	1 cut(s)	416
MboI	GATC	9 cut(s)	43, 173, 205, 452, 565, 639, 695, 802, 881
MboII	GAAGA	8 cut(s)	50, 53, 349, 536, 631, 773, 838, 867
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	3 cut(s)	43, 452, 802
MhlI	GDGCHC	1 cut(s)	862
MlyI	GAGTC	4 cut(s)	178, 290, 449, 875
MmeI	TCCRAC	1 cut(s)	830
MseI	TTAA	3 cut(s)	90, 99, 512
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	2 cut(s)	218, 1130
MunI	CAATTG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	759
MwoI	GCNNNNNNNGC	1 cut(s)	413
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	9 cut(s)	43, 173, 205, 452, 565, 639, 695, 802, 881
NlaIII	CATG	8 cut(s)	62, 362, 412, 566, 577, 646, 778, 1037
NspI	RCATGY	1 cut(s)	1037
PciSI	GCTCTTC	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	1 cut(s)	1095
PfeI	GAWTC	5 cut(s)	308, 323, 791, 999, 1086
PflMI	CCANNNNNTGG	2 cut(s)	92, 1037
PinAI	ACCGGT	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	136, 406
PleI	GAGTC	4 cut(s)	177, 289, 448, 874
PpsI	GAGTC	4 cut(s)	177, 289, 448, 874
PshBI	ATTAAT	1 cut(s)	90
PsiI	TTATAA	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	862
PspPI	GGNCC	1 cut(s)	366
PsuI	RGATCY	3 cut(s)	43, 452, 802
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	4 cut(s)	257, 539, 1029, 1070
RsaNI	GTAC	4 cut(s)	256, 538, 1028, 1069
SacI	GAGCTC	1 cut(s)	862
SapI	GCTCTTC	1 cut(s)	850
SaqAI	TTAA	3 cut(s)	90, 99, 512
SatI	GCNGC	2 cut(s)	135, 405
Sau3AI	GATC	9 cut(s)	43, 173, 205, 452, 565, 639, 695, 802, 881
Sau96I	GGNCC	1 cut(s)	366
SchI	GAGTC	4 cut(s)	178, 290, 449, 875
SduI	GDGCHC	1 cut(s)	862
SfaNI	GCATC	3 cut(s)	103, 284, 1108
SmiI	ATTTAAAT	1 cut(s)	513
SsiI	CCGC	2 cut(s)	414, 1050
SspMI	CTAG	3 cut(s)	12, 317, 1138
SstI	GAGCTC	1 cut(s)	862
StyI	CCWWGG	1 cut(s)	573
SwaI	ATTTAAAT	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	34, 815
TaiI	ACGT	2 cut(s)	731, 754
TaqI	TCGA	3 cut(s)	172, 196, 244
TatI	WGTACW	2 cut(s)	537, 1068
TfiI	GAWTC	5 cut(s)	308, 323, 791, 999, 1086
Tru1I	TTAA	3 cut(s)	90, 99, 512
Tru9I	TTAA	3 cut(s)	90, 99, 512
TseI	GCWGC	2 cut(s)	134, 404
TspDTI	ATGAA	6 cut(s)	162, 537, 564, 611, 947, 1089
Van91I	CCANNNNNTGG	2 cut(s)	92, 1037
VspI	ATTAAT	1 cut(s)	90
XapI	RAATTY	3 cut(s)	25, 818, 967
XceI	RCATGY	1 cut(s)	1037
XcmI	CCANNNNNNNNNTGG	2 cut(s)	266, 935
XspI	CTAG	3 cut(s)	12, 317, 1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.