RLG00000020485

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001696
Physical Location & Seq
Reverse (-)
65522462 .. 65523085
624 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020485

Sequence Viewer

Length: 501 bp
ATGAAGGCAAGTCTGAGGAAAGGAGTCGATCTGGTGGGTCGCTTCAAAGTCGATTTTCTGATCTATGCTTACCGGTCAGTAAACTTTGTGGTCATATTCGACAAATTGAGTACCAAAATCCAAGTGTTCAAGAAAGCTAAGGAATCTCTCCTAGATGATTCAACTTATAAGAAGAAAAAGTTTCAATTTGACCATGTGTGGCCCATTCTAAAAAATGCTGAGAAATGGCTTGATAATGCTGCCATGACCGCTACTACATTTGGCTATGGTAACTTTAGTAACCTTAACCAGTTTCAAAGTGGTTCTGAAGCTACATTTCATTTTGGAAATTTTGGTAGTCCTTTACAATTTTCAAGTGGATTCGGAGGAAGTGGTGGGAGTGGAGGAGTACCACATGCTGGAGGAAGTAGCGGTGGAGGAGTGCCTGAGTACAATGAAAGTGGTGGATTCGGAACAAGCGATGGTTATGGAGGAAGTGATGCTAATCTACCGGAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

167

Amino Acids

17.89

Weight (kDa)

8.71

Isoelectric Point (pI)

27.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 398
AciI CCGC 2 cut(s) 249, 411
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 3 cut(s) 112, 390, 431
AfiI CCNNNNNNNGG 1 cut(s) 398
AgeI ACCGGT 1 cut(s) 72
AgsI TTSAA 6 cut(s) 46, 130, 162, 185, 296, 354
AluBI AGCT 2 cut(s) 137, 311
AluI AGCT 2 cut(s) 137, 311
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 328
AsiGI ACCGGT 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 226
BccI CCATC 1 cut(s) 455
BfaI CTAG 2 cut(s) 152, 499
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 201
BmsI GCATC 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 420
Bpu10I CCTNAGC 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 483
BsaWI WCCGGW 2 cut(s) 72, 490
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse118I RCCGGY 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 289
Bse8I GATNNNNATC 1 cut(s) 483
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMII CTCAG 3 cut(s) 5, 210, 417
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 2 cut(s) 399, 432
BseXI GCAGC 1 cut(s) 226
BshFI GGCC 1 cut(s) 202
BshTI ACCGGT 1 cut(s) 72
BsiSI CCGG 2 cut(s) 73, 491
BslI CCNNNNNNNGG 1 cut(s) 398
BsnI GGCC 1 cut(s) 202
Bsp143I GATC 2 cut(s) 28, 60
BspACI CCGC 2 cut(s) 249, 411
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 3 cut(s) 6, 211, 418
BsrFI RCCGGY 1 cut(s) 72
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 1 cut(s) 72
BssMI GATC 2 cut(s) 28, 60
BstDEI CTNAG 4 cut(s) 14, 138, 219, 426
BstKTI GATC 2 cut(s) 31, 63
BstMBI GATC 2 cut(s) 28, 60
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 226
BsuRI GGCC 1 cut(s) 202
BtgZI GCGATG 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 201
Csp6I GTAC 3 cut(s) 111, 389, 430
CspAI ACCGGT 1 cut(s) 72
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviAII CATG 3 cut(s) 194, 244, 395
CviJI RGCY 5 cut(s) 137, 202, 229, 264, 311
CviKI_1 RGCY 5 cut(s) 137, 202, 229, 264, 311
CviQI GTAC 3 cut(s) 111, 389, 430
DdeI CTNAG 4 cut(s) 14, 138, 219, 426
DpnI GATC 2 cut(s) 30, 62
DpnII GATC 2 cut(s) 28, 60
Eco57I CTGAAG 1 cut(s) 327
FaeI CATG 3 cut(s) 197, 247, 398
FaiI YATR 8 cut(s) 66, 95, 168, 195, 245, 267, 396, 468
FatI CATG 3 cut(s) 193, 243, 394
Fnu4HI GCNGC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 2 cut(s) 152, 499
GluI GCNGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 420
HaeIII GGCC 1 cut(s) 202
HapII CCGG 2 cut(s) 73, 491
Hin1II CATG 3 cut(s) 197, 247, 398
HinfI GANTC 5 cut(s) 24, 143, 158, 360, 447
HpaII CCGG 2 cut(s) 73, 491
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 5 cut(s) 15, 60, 307, 365, 452
Hpy188III TCNNGA 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 4 cut(s) 14, 138, 219, 426
Hsp92II CATG 3 cut(s) 197, 247, 398
Kzo9I GATC 2 cut(s) 28, 60
LpnPI CCDG 5 cut(s) 17, 86, 302, 384, 438
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 1 cut(s) 469
MaeI CTAG 2 cut(s) 152, 499
MaeIII GTNAC 2 cut(s) 269, 278
MalI GATC 2 cut(s) 30, 62
MboI GATC 2 cut(s) 28, 60
MboII GAAGA 1 cut(s) 184
MluCI AATT 4 cut(s) 104, 185, 328, 347
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 6 cut(s) 9, 359, 377, 395, 410, 464
MseI TTAA 1 cut(s) 285
MspI CCGG 2 cut(s) 73, 491
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 2 cut(s) 28, 60
NlaIII CATG 3 cut(s) 197, 247, 398
NspI RCATGY 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PfeI GAWTC 4 cut(s) 143, 158, 360, 447
PflMI CCANNNNNTGG 1 cut(s) 398
PinAI ACCGGT 1 cut(s) 72
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PsiI TTATAA 1 cut(s) 168
PspPI GGNCC 1 cut(s) 201
RsaI GTAC 3 cut(s) 112, 390, 431
RsaNI GTAC 3 cut(s) 111, 389, 430
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 2 cut(s) 28, 60
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 1 cut(s) 33
SetI ASST 3 cut(s) 139, 285, 313
SfaNI GCATC 1 cut(s) 469
Sse9I AATT 4 cut(s) 104, 185, 328, 347
SsiI CCGC 2 cut(s) 249, 411
SspMI CTAG 2 cut(s) 152, 499
TaqI TCGA 3 cut(s) 27, 51, 99
TasI AATT 4 cut(s) 104, 185, 328, 347
TatI WGTACW 1 cut(s) 429
TfiI GAWTC 4 cut(s) 143, 158, 360, 447
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 17, 308, 450
Van91I CCANNNNNTGG 1 cut(s) 398
XapI RAATTY 1 cut(s) 328
XceI RCATGY 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XspI CTAG 2 cut(s) 152, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.