AT4G10230

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001696
Physical Location & Seq
Forward (+)
6366261 .. 6367185
925 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G10230.1

Sequence Viewer

Length: 822 bp
ATGACGTCAATTCTTTCTGCAGTCTCAAAGCTGAGAGGATGCGTTAACCAAATTGAGAATAAAAATCCTAGCGGTGCTTCTGAAGAAGACATTTTAAACCAAGCGAAGATGTTATTAACTCAATATGAAAAATACAAGAGAGGATTCAAATTTGATCATGTATGGCCTATTCTTAAAGGTATTGAGAAATTTGCTAATGATAACATGAAGACACCCCCTGCATTCCAAGGAGAAGGTCGTGATGTTACGTCATCTTCATCATTTTCAATCAATACCGAGTCATCACCTTCCCCTGGTATGAATTCAATTGATCTAAATATGGATAGTGAAGATGCCAATTTTAGTTTATCTTCAAGGCCTATGGGTTTGAAAAAAGCAAAGCGAAAACAACAATCTGAAGAACAGTTTAAACAACTTTTGGAGCAAAATGATAAACTTATCAAAGCTATTACTAAAGGTACTTCTGAAAGAAATGAAATTCAAAGGCAGAAGATCGAGGTAGCTAGAATGAAAGAAGAGAATAAAATATTATTTGCAGATTTGAATTCTATAAGTGATCCATCCTCTCGTGCATATGTTGAAAATGAGAGAAAAAGAATTTTGGAAAAAAGAGCACAAACAAACCAACATGAAGAAGATGGTGAAGGCTCCCAATATCATGGATCTCAATATCGAGCATCTCATTATCAAGAAAGTCTATTTCATGGAAAACAAGTTCAAGGAGAACCGGATCAAGGTGAAGACAAAAGATCACCAAATAACCAAGAAGATTTTACCCAATATTATAATTATCTTAGCGGAACCGGAAATAATTTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

273

Amino Acids

31.1

Weight (kDa)

6.27

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 47 - 200 7.2e-32 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 786
AatII GACGTC 1 cut(s) 8
AciI CCGC 2 cut(s) 72, 798
AclWI GGATC 3 cut(s) 551, 670, 738
AcsI RAATTY 6 cut(s) 149, 188, 301, 477, 544, 597
AcuI CTGAAG 2 cut(s) 102, 417
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 2 cut(s) 293, 734
AgsI TTSAA 9 cut(s) 148, 267, 306, 354, 370, 482, 544, 581, 719
AjnI CCWGG 1 cut(s) 292
AloI GAACNNNNNNTCC 2 cut(s) 699, 731
AluBI AGCT 3 cut(s) 31, 446, 503
AluI AGCT 3 cut(s) 31, 446, 503
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 3 cut(s) 551, 670, 738
AoxI GGCC 2 cut(s) 164, 356
ApoI RAATTY 6 cut(s) 149, 188, 301, 477, 544, 597
AsuHPI GGTGA 4 cut(s) 276, 653, 744, 749
BauI CACGAG 1 cut(s) 567
BbsI GAAGAC 3 cut(s) 93, 215, 747
Bbv12I GWGCWC 1 cut(s) 616
BccI CCATC 2 cut(s) 568, 632
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 2 cut(s) 69, 504
BfmI CTRYAG 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 294
BmiI GGNNCC 2 cut(s) 649, 802
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 3 cut(s) 29, 322, 686
BpiI GAAGAC 3 cut(s) 93, 215, 747
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 226, 292
BsaWI WCCGGW 2 cut(s) 727, 803
Bsc4I CCNNNNNNNGG 2 cut(s) 293, 734
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 226, 292
BseGI GGATG 2 cut(s) 44, 560
BseLI CCNNNNNNNGG 2 cut(s) 293, 734
BseMII CTCAG 1 cut(s) 23
BshFI GGCC 2 cut(s) 166, 358
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 2 cut(s) 728, 804
BslI CCNNNNNNNGG 2 cut(s) 293, 734
BsmAI GTCTC 1 cut(s) 28
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 2 cut(s) 166, 358
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 7 cut(s) 154, 310, 492, 556, 662, 730, 749
BspACI CCGC 2 cut(s) 72, 798
BspANI GGCC 2 cut(s) 166, 358
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 649, 802
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 3 cut(s) 551, 670, 738
BssECI CCNNGG 2 cut(s) 226, 292
BssMI GATC 7 cut(s) 154, 310, 492, 556, 662, 730, 749
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 567
BssT1I CCWWGG 1 cut(s) 226
Bst2BI CACGAG 1 cut(s) 567
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 405
Bst6I CTCTTC 1 cut(s) 510
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 2 cut(s) 32, 794
BstF5I GGATG 2 cut(s) 44, 560
BstKTI GATC 7 cut(s) 157, 313, 495, 559, 665, 733, 752
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 7 cut(s) 154, 310, 492, 556, 662, 730, 749
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 18
BstV2I GAAGAC 3 cut(s) 93, 215, 747
BstX2I RGATCY 1 cut(s) 662
BstXI CCANNNNNNTGG 1 cut(s) 659
BstYI RGATCY 1 cut(s) 662
BsuRI GGCC 2 cut(s) 166, 358
BtsCI GGATG 2 cut(s) 44, 560
Csp6I GTAC 1 cut(s) 459
CviAII CATG 5 cut(s) 158, 205, 629, 659, 704
CviJI RGCY 6 cut(s) 31, 166, 358, 446, 503, 648
CviKI_1 RGCY 6 cut(s) 31, 166, 358, 446, 503, 648
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 2 cut(s) 32, 794
DpnI GATC 7 cut(s) 156, 312, 494, 558, 664, 732, 751
DpnII GATC 7 cut(s) 154, 310, 492, 556, 662, 730, 749
DraI TTTAAA 2 cut(s) 96, 409
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 226
Eco147I AGGCCT 1 cut(s) 358
Eco57I CTGAAG 2 cut(s) 102, 417
EcoRI GAATTC 2 cut(s) 301, 544
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 5 cut(s) 161, 208, 632, 662, 707
FatI CATG 5 cut(s) 157, 204, 628, 658, 703
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 1 cut(s) 154
FokI GGATG 2 cut(s) 51, 547
FspBI CTAG 2 cut(s) 69, 504
HaeIII GGCC 2 cut(s) 166, 358
HapII CCGG 2 cut(s) 728, 804
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 161, 208, 632, 662, 707
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 2 cut(s) 144, 278
HpaI GTTAAC 1 cut(s) 46
HpaII CCGG 2 cut(s) 728, 804
HphI GGTGA 4 cut(s) 276, 653, 744, 749
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 3 cut(s) 82, 397, 466
Hpy188III TCNNGA 2 cut(s) 239, 689
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 3 cut(s) 227, 297, 638
HpyCH4III ACNGT 1 cut(s) 405
HpyCH4IV ACGT 2 cut(s) 5, 248
HpyCH4V TGCA 4 cut(s) 20, 221, 536, 572
HpyF3I CTNAG 2 cut(s) 32, 794
HpySE526I ACGT 2 cut(s) 5, 248
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 161, 208, 632, 662, 707
Ksp22I TGATCA 1 cut(s) 154
KspAI GTTAAC 1 cut(s) 46
Kzo9I GATC 7 cut(s) 154, 310, 492, 556, 662, 730, 749
LmnI GCTCC 2 cut(s) 421, 653
LpnPI CCDG 5 cut(s) 231, 279, 306, 741, 817
LweI GCATC 3 cut(s) 29, 322, 686
MaeI CTAG 2 cut(s) 69, 504
MaeII ACGT 2 cut(s) 5, 248
MaeIII GTNAC 1 cut(s) 244
MalI GATC 7 cut(s) 156, 312, 494, 558, 664, 732, 751
MboI GATC 7 cut(s) 154, 310, 492, 556, 662, 730, 749
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 662
MhlI GDGCHC 1 cut(s) 616
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 4 cut(s) 29, 134, 490, 574
MseI TTAA 6 cut(s) 45, 95, 116, 174, 408, 820
MspI CCGG 2 cut(s) 728, 804
MspR9I CCNGG 1 cut(s) 294
MssI GTTTAAAC 1 cut(s) 409
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 1 cut(s) 294
NdeI CATATG 1 cut(s) 574
NdeII GATC 7 cut(s) 154, 310, 492, 556, 662, 730, 749
NlaIII CATG 5 cut(s) 161, 208, 632, 662, 707
NlaIV GGNNCC 2 cut(s) 649, 802
PceI AGGCCT 1 cut(s) 358
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 144
PleI GAGTC 1 cut(s) 286
PmeI GTTTAAAC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 286
PsiI TTATAA 1 cut(s) 786
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 649, 802
PstI CTGCAG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 662
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
SaqAI TTAA 6 cut(s) 45, 95, 116, 174, 408, 820
Sau3AI GATC 7 cut(s) 154, 310, 492, 556, 662, 730, 749
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 3 cut(s) 29, 322, 686
SfcI CTRYAG 1 cut(s) 18
SseBI AGGCCT 1 cut(s) 358
SsiI CCGC 2 cut(s) 72, 798
SspI AATATT 2 cut(s) 528, 782
SspMI CTAG 2 cut(s) 69, 504
StuI AGGCCT 1 cut(s) 358
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 405
TaiI ACGT 2 cut(s) 8, 251
TaqI TCGA 2 cut(s) 495, 673
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 6 cut(s) 45, 95, 116, 174, 408, 820
Tru9I TTAA 6 cut(s) 45, 95, 116, 174, 408, 820
TspDTI ATGAA 8 cut(s) 141, 221, 246, 314, 489, 524, 645, 692
XapI RAATTY 6 cut(s) 149, 188, 301, 477, 544, 597
XspI CTAG 2 cut(s) 69, 504
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.