Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002666.1

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Forward (+)

97568 .. 98314

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002666.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgcacgtcgctaaaccgcgtagaagaaaggagtcatttgaaggatctcaatcaggttctcgcacatcaaagtcatctgaaactccatcattttgtgttgatttgaatgcagatgaagatgagcaagagtacatcaatgatgaagttgcttcacatgatcgtcccataggaacgaagatggcaaagataaaaaggaaatccactgaggagaagaaaaagaattatgataagatcatggctgacaatcaagcgataaaagagttacttgaaaaaagtatgctggagaaaacaaccttcgcttccaaaattgagcattacacgtcaaacaaactaaatatccaacgccagcgcgatgaggacaaaatcatgctaaccagtttggattccataacaaatccaacggatcgtgacttcttgaagatgagaaaggcggaaattatgcagagaagagctcgtgagtcccaatcacaaggaccacccgctacatttggctatggtaactttagtaacctaaactcattccaaagtagttctgaagctacctttcattatggaaattttggtagtctcttacaatttccaagtggattcggaggaagcggtgcgtatggaggagtgccccatgctagaggaagtagtcaatttggaacaagtagtgttgaagttgtgcctgacgacaatcaaagtggtggatttagaacaagtgatggttatggaagaagtaatgctaatctactggaatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

248

Amino Acids

27.7

Weight (kDa)

7.79

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	19, 351
AciI	CCGC	4 cut(s)	17, 431, 480, 600
AclWI	GGATC	2 cut(s)	52, 411
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	1 cut(s)	131
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	5 cut(s)	41, 106, 269, 418, 662
AjiI	CACGTC	2 cut(s)	7, 321
AluBI	AGCT	2 cut(s)	452, 539
AluI	AGCT	2 cut(s)	452, 539
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	2 cut(s)	52, 411
ApoI	RAATTY	1 cut(s)	556
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	473
BaeGI	GKGCMC	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	454
BauI	CACGAG	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	454
BccI	CCATC	3 cut(s)	94, 172, 701
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	1 cut(s)	627
Bme18I	GGWCC	1 cut(s)	473
BmgBI	CACGTC	2 cut(s)	7, 321
BmgT120I	GGNCC	1 cut(s)	473
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpmI	CTGGAG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	375, 741
Bse8I	GATNNNNATC	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	375, 741
BseRI	GAGGAG	2 cut(s)	221, 627
BseSI	GKGCMC	1 cut(s)	621
Bsh1236I	CGCG	2 cut(s)	19, 351
BsiHKAI	GWGCWC	1 cut(s)	454
BslFI	GGGAC	2 cut(s)	147, 445
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	2 cut(s)	147, 445
BsmI	GAATGC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	454, 621
Bsp143I	GATC	4 cut(s)	44, 157, 231, 403
BspACI	CCGC	4 cut(s)	17, 431, 480, 600
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	2 cut(s)	19, 351
BspPI	GGATC	2 cut(s)	52, 411
BspQI	GCTCTTC	1 cut(s)	442
BsrI	ACTGG	2 cut(s)	375, 741
BssMI	GATC	4 cut(s)	44, 157, 231, 403
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst6I	CTCTTC	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	204
BstFNI	CGCG	2 cut(s)	19, 351
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	4 cut(s)	47, 160, 234, 406
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	4 cut(s)	44, 157, 231, 403
BstSLI	GKGCMC	1 cut(s)	621
BstUI	CGCG	2 cut(s)	19, 351
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	366
BtrI	CACGTC	2 cut(s)	7, 321
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	347
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	130
CspCI	CAANNNNNGTGG	2 cut(s)	667, 702
CviAII	CATG	4 cut(s)	155, 235, 367, 623
CviJI	RGCY	4 cut(s)	239, 452, 492, 539
CviKI_1	RGCY	4 cut(s)	239, 452, 492, 539
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	4 cut(s)	46, 159, 233, 405
DpnII	GATC	4 cut(s)	44, 157, 231, 403
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
EciI	GGCGGA	1 cut(s)	446
Ecl136II	GAGCTC	1 cut(s)	452
Eco24I	GRGCYC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	473
Eco53kI	GAGCTC	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	555
EcoICRI	GAGCTC	1 cut(s)	452
EcoT38I	GRGCYC	1 cut(s)	454
FaeI	CATG	4 cut(s)	158, 238, 370, 626
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	2 cut(s)	147, 445
FatI	CATG	4 cut(s)	154, 234, 366, 622
FauI	CCCGC	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	454
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	302
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	158, 238, 370, 626
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	4 cut(s)	32, 383, 458, 588
Hpy188I	TCNGA	3 cut(s)	79, 535, 593
Hpy188III	TCNNGA	3 cut(s)	407, 415, 455
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	35, 304
HpyCH4IV	ACGT	2 cut(s)	6, 320
HpyCH4V	TGCA	3 cut(s)	4, 110, 442
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	2 cut(s)	6, 320
Hsp92II	CATG	4 cut(s)	158, 238, 370, 626
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	4 cut(s)	44, 157, 231, 403
LguI	GCTCTTC	1 cut(s)	442
LpnPI	CCDG	6 cut(s)	39, 266, 359, 388, 684, 722
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	2 cut(s)	6, 320
MaeIII	GTNAC	4 cut(s)	261, 407, 497, 506
MalI	GATC	4 cut(s)	46, 159, 233, 405
MboI	GATC	4 cut(s)	44, 157, 231, 403
MboII	GAAGA	7 cut(s)	36, 128, 187, 223, 430, 459, 729
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	454, 621
MluCI	AATT	6 cut(s)	220, 306, 435, 556, 575, 641
MlyI	GAGTC	2 cut(s)	41, 467
MmeI	TCCRAC	2 cut(s)	364, 422
MnlI	CCTC	5 cut(s)	199, 349, 587, 605, 623
Mva1269I	GAATGC	1 cut(s)	112
MvnI	CGCG	2 cut(s)	19, 351
NdeII	GATC	4 cut(s)	44, 157, 231, 403
NlaIII	CATG	4 cut(s)	158, 238, 370, 626
NmuCI	GTSAC	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	442
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	383, 588
PleI	GAGTC	2 cut(s)	40, 466
PpsI	GAGTC	2 cut(s)	40, 466
Psp124BI	GAGCTC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SacI	GAGCTC	1 cut(s)	454
SapI	GCTCTTC	1 cut(s)	442
Sau3AI	GATC	4 cut(s)	44, 157, 231, 403
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	2 cut(s)	41, 467
SduI	GDGCHC	2 cut(s)	454, 621
SetI	ASST	8 cut(s)	9, 58, 296, 323, 454, 513, 541, 545
SinI	GGWCC	1 cut(s)	473
Sse9I	AATT	6 cut(s)	220, 306, 435, 556, 575, 641
SsiI	CCGC	4 cut(s)	17, 431, 480, 600
SspI	AATATT	1 cut(s)	743
SspMI	CTAG	1 cut(s)	627
SstI	GAGCTC	1 cut(s)	454
TaiI	ACGT	2 cut(s)	9, 323
TasI	AATT	6 cut(s)	220, 306, 435, 556, 575, 641
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	383, 588
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	129, 156, 536
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	1 cut(s)	556
XspI	CTAG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.