Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Forward (+)

4651571 .. 4657455

Gene Structure 5885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022589

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGACTACGTCAGCGTTGATCCCCTTGGACATAGCCAACAAGGACGTCGGTGATGATCCCCTAAGGCTGCAATCCCCTAGGACGTCGGCGTCGATCCCCTTGAACATAGCTGACGAGGACGTCAGCGTCGATACCTTTGGACATAGCAGACGAGGACTTCGACGGCGATCCCCCAGGACGTCAGCGTCGATCCCCTTGGACGTAGCCAACAAGGAAGTAGATGATGATCCCCCAAGACATGAAGACGAGCAAGAGTACATCAACAATGAAGTTACTTCACATGATCGTCCTATAGGAACGAATATGGCAAAGATGAAAAGGAAAGCCACCGATGAGAAGAAAAAGAATTGTGATAAGATCACGGCCGACAACCAAGCAATAAAAGAGTTATTTGAAAAAAATTTAACAGACCATGAATTCTTGAATTTGAGAAAGGCTGAAGTTATGCAAAGAAGAGCTCGTGAGTCTCAATCACAAGGATCACTACCTACTAGATTTGGCTACAATAACTTTAGTAACTTGAACCAATTTCAAAGTGGTTCTGAAGCTACTTTTCATTCTGGAAATTTTGCTAGTCCCTTACAATTTTCAAGTGGATTTGGAAGAAGTGGTGGGAATGGAGGAGTACCACATACTGGAGGAAGTATTGGGTTTAGAATAAGTAGCGGTGGAGGAGTGCTTGAGTATAATGAAAGTGGTGGATTCAGAATAAGCAATGGTTATGGAGGAAGTGATGCTAATCTACTTAAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

252

Amino Acids

27.51

Weight (kDa)

6.61

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	4 cut(s)	88, 119, 125, 184
AatII	GACGTC	4 cut(s)	48, 86, 123, 182
AccB7I	CCANNNNNTGG	1 cut(s)	635
AciI	CCGC	1 cut(s)	666
AclWI	GGATC	7 cut(s)	13, 50, 88, 162, 184, 221, 487
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	4 cut(s)	400, 416, 424, 565
AcuI	CTGAAG	2 cut(s)	459, 564
AcyI	GRCGYC	5 cut(s)	45, 83, 89, 120, 179
AfaI	GTAC	2 cut(s)	257, 627
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgsI	TTSAA	6 cut(s)	103, 395, 424, 523, 533, 591
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	3 cut(s)	110, 458, 548
AluI	AGCT	3 cut(s)	110, 458, 548
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	7 cut(s)	13, 50, 88, 162, 184, 221, 487
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	4 cut(s)	400, 416, 424, 565
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AspA2I	CCTAGG	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	62
AvrII	CCTAGG	1 cut(s)	77
AxyI	CCTNAGG	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	54
BceAI	ACGGC	2 cut(s)	179, 378
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	471
BfaI	CTAG	3 cut(s)	78, 492, 573
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	1 cut(s)	68
BlnI	CCTAGG	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	724
BpiI	GAAGAC	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	657
BpuEI	CTTGAG	1 cut(s)	701
BsaBI	GATNNNNATC	2 cut(s)	225, 738
BsaHI	GRCGYC	5 cut(s)	45, 83, 89, 120, 179
BsaJI	CCNNGG	4 cut(s)	24, 77, 173, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	1 cut(s)	640
Bse21I	CCTNAGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	721
Bse8I	GATNNNNATC	2 cut(s)	225, 738
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	4 cut(s)	24, 77, 173, 195
BseJI	GATNNNNATC	2 cut(s)	225, 738
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMI	GCAATG	1 cut(s)	721
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	2 cut(s)	636, 687
BseX3I	CGGCCG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	365
BsiEI	CGRYCG	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	460
BslFI	GGGAC	1 cut(s)	561
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	561
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	9 cut(s)	18, 55, 93, 167, 189, 226, 283, 357, 479
BspACI	CCGC	1 cut(s)	666
BspANI	GGCC	1 cut(s)	365
BspPI	GGATC	7 cut(s)	13, 50, 88, 162, 184, 221, 487
BspQI	GCTCTTC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	721
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	4 cut(s)	24, 77, 173, 195
BssMI	GATC	9 cut(s)	18, 55, 93, 167, 189, 226, 283, 357, 479
BssNI	GRCGYC	5 cut(s)	45, 83, 89, 120, 179
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	3 cut(s)	24, 77, 195
Bst2BI	CACGAG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	448
BstACI	GRCGYC	5 cut(s)	45, 83, 89, 120, 179
BstDEI	CTNAG	1 cut(s)	62
BstKTI	GATC	9 cut(s)	21, 58, 96, 170, 192, 229, 286, 360, 482
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	9 cut(s)	18, 55, 93, 167, 189, 226, 283, 357, 479
BstMCI	CGRYCG	1 cut(s)	366
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	249
BstZI	CGGCCG	1 cut(s)	363
Bsu36I	CCTNAGG	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	365
CseI	GACGC	3 cut(s)	78, 115, 174
Csp6I	GTAC	2 cut(s)	256, 626
CviAII	CATG	3 cut(s)	239, 281, 413
CviQI	GTAC	2 cut(s)	256, 626
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	9 cut(s)	20, 57, 95, 169, 191, 228, 285, 359, 481
DpnII	GATC	9 cut(s)	18, 55, 93, 167, 189, 226, 283, 357, 479
DrdI	GACNNNNNNGTC	4 cut(s)	88, 119, 125, 184
DseDI	GACNNNNNNGTC	4 cut(s)	88, 119, 125, 184
EaeI	YGGCCR	1 cut(s)	363
EagI	CGGCCG	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	448
Ecl136II	GAGCTC	1 cut(s)	458
EclXI	CGGCCG	1 cut(s)	363
Eco130I	CCWWGG	3 cut(s)	24, 77, 195
Eco24I	GRGCYC	1 cut(s)	460
Eco52I	CGGCCG	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	458
Eco57I	CTGAAG	2 cut(s)	459, 564
Eco81I	CCTNAGG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	458
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	173
EcoT14I	CCWWGG	3 cut(s)	24, 77, 195
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	3 cut(s)	24, 77, 195
FaeI	CATG	3 cut(s)	242, 284, 416
FaqI	GGGAC	1 cut(s)	561
FatI	CATG	3 cut(s)	238, 280, 412
Fnu4HI	GCNGC	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	3 cut(s)	78, 492, 573
GluI	GCNGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	1 cut(s)	365
HgaI	GACGC	3 cut(s)	78, 115, 174
Hin1I	GRCGYC	5 cut(s)	45, 83, 89, 120, 179
Hin1II	CATG	3 cut(s)	242, 284, 416
HinfI	GANTC	2 cut(s)	464, 702
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	544, 707
Hpy188III	TCNNGA	3 cut(s)	421, 461, 561
Hpy99I	CGWCG	6 cut(s)	50, 88, 94, 131, 165, 190
HpyCH4IV	ACGT	6 cut(s)	8, 45, 83, 120, 179, 201
HpyCH4V	TGCA	2 cut(s)	70, 448
HpyF3I	CTNAG	1 cut(s)	62
HpySE526I	ACGT	6 cut(s)	8, 45, 83, 120, 179, 201
Hsp92I	GRCGYC	5 cut(s)	45, 83, 89, 120, 179
Hsp92II	CATG	3 cut(s)	242, 284, 416
Kzo9I	GATC	9 cut(s)	18, 55, 93, 167, 189, 226, 283, 357, 479
LguI	GCTCTTC	1 cut(s)	448
LpnPI	CCDG	4 cut(s)	160, 187, 546, 621
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	3 cut(s)	78, 492, 573
MaeII	ACGT	6 cut(s)	8, 45, 83, 120, 179, 201
MaeIII	GTNAC	2 cut(s)	271, 515
MalI	GATC	9 cut(s)	20, 57, 95, 169, 191, 228, 285, 359, 481
MboI	GATC	9 cut(s)	18, 55, 93, 167, 189, 226, 283, 357, 479
MboII	GAAGA	4 cut(s)	254, 349, 465, 615
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	7 cut(s)	346, 400, 416, 424, 527, 565, 584
MlyI	GAGTC	1 cut(s)	473
MnlI	CCTC	6 cut(s)	109, 146, 614, 632, 665, 719
MseI	TTAA	3 cut(s)	404, 747, 754
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
NdeII	GATC	9 cut(s)	18, 55, 93, 167, 189, 226, 283, 357, 479
NlaIII	CATG	3 cut(s)	242, 284, 416
PciSI	GCTCTTC	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	4 cut(s)	89, 126, 157, 185
PfeI	GAWTC	1 cut(s)	702
PflFI	GACNNNGTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
Psp124BI	GAGCTC	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	2 cut(s)	257, 627
RsaNI	GTAC	2 cut(s)	256, 626
SacI	GAGCTC	1 cut(s)	460
SapI	GCTCTTC	1 cut(s)	448
SaqAI	TTAA	3 cut(s)	404, 747, 754
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	9 cut(s)	18, 55, 93, 167, 189, 226, 283, 357, 479
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	724
SfcI	CTRYAG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	7 cut(s)	346, 400, 416, 424, 527, 565, 584
SsiI	CCGC	1 cut(s)	666
SspI	AATATT	1 cut(s)	752
SspMI	CTAG	3 cut(s)	78, 492, 573
SstI	GAGCTC	1 cut(s)	460
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	3 cut(s)	24, 77, 195
TaiI	ACGT	6 cut(s)	11, 48, 86, 123, 182, 204
TaqI	TCGA	4 cut(s)	92, 129, 160, 188
TasI	AATT	7 cut(s)	346, 400, 416, 424, 527, 565, 584
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	702
Tru1I	TTAA	3 cut(s)	404, 747, 754
Tru9I	TTAA	3 cut(s)	404, 747, 754
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	6 cut(s)	255, 282, 329, 429, 545, 705
Tth111I	GACNNNGTC	1 cut(s)	7
Van91I	CCANNNNNTGG	1 cut(s)	635
XapI	RAATTY	4 cut(s)	400, 416, 424, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XmaJI	CCTAGG	1 cut(s)	77
XspI	CTAG	3 cut(s)	78, 492, 573
ZraI	GACGTC	4 cut(s)	46, 84, 121, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.