Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8293213.1

Orthogroup ID

OG0001696

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 781

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8293213.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgggaacggagatggcaaagatgaaaaggaaatccattgaggagaagaaaaagaattatgataagatcatggccgacaatcaagcgataaaagagttacttgaaaaaagtatgctggagaaaacaagcttcgcttccaaaattgagcattacacatcaaacaaactgaatatccaacgccagcgcgatgaggacaaaatcatgctaaccagtttggattccataacagatccaacggaccgtgacttcttgaagatgagaaaggcggaaattatgcagagaagagctcgtgagttccaatcacaaggaccacccgctacatttggctacggtaactttagtaacctaaactcattccaaaatggttctgaagctacctttcattatggaaattttggtagtcccttacaatttccaagtggattcgaaggaagcggtgcatatggaggagtgccccatgctggaggaagtagtcaatttggaacaagtagtgctgaagttgtgcctgacgacaatcaaagtggtggatttagaacaagtgatggttatggaggaagtgatgctaatctgccggaatattacctaaattta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

197

Amino Acids

21.89

Weight (kDa)

5.97

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24380 AT1G66235 AT1G66235 AT2G13760 AT4G10230
fragaria_vesca	FvH4_1g29460 FvH4_1g29461 FvH4_2g00671 FvH4_2g02401 FvH4_4g12912 FvH4_5g16793 FvH4_5g35255 FvH4_6g21850
rosa_laevigata	RLG00000001802 RLG00000007297 RLG00000009939 RLG00000014129 RLG00000020485 RLG00000020868 RLG00000022589 RLG00000026627
rosa_multiflora	Rmu_co8293213.1_g000001 Rmu_co8323109.1_g000001 Rmu_sc0000149.1_g000032 Rmu_sc0000775.1_g000012 Rmu_sc0000776.1_g000009 Rmu_sc0001872.1_g000007 Rmu_sc0002666.1_g000024 Rmu_sc0003767.1_g000003 Rmu_sc0006410.1_g000019 Rmu_sc0006797.1_g000002 Rmu_sc0014826.1_g000002 Rmu_sc0015243.1_g000005 Rmu_sc0033419.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296630 Rroxscaffold_7G00202090
rosa_samantha	Rh1BG046500 Rh2CG257500 Rh2CG423800 Rh2CG423900 Rh4BG046900 Rh4BG047000 Rh4BG078300 Rh5CG060500 Rh5CG341400 Rh6DG172800 Rh7BG334200
rosa_wichuraiana	Rw7G024310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	186
AciI	CCGC	3 cut(s)	266, 315, 435
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	391, 586
AcuI	CTGAAG	2 cut(s)	390, 516
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	104, 253
AluBI	AGCT	3 cut(s)	129, 287, 374
AluI	AGCT	3 cut(s)	129, 287, 374
Alw21I	GWGCWC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	72
ApoI	RAATTY	2 cut(s)	391, 586
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	2 cut(s)	238, 308
AsuII	TTCGAA	1 cut(s)	426
AvaII	GGWCC	2 cut(s)	238, 308
BaeGI	GKGCMC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	289
BauI	CACGAG	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	289
BccI	CCATC	2 cut(s)	7, 536
Bme18I	GGWCC	2 cut(s)	238, 308
BmgT120I	GGNCC	2 cut(s)	238, 308
BmsI	GCATC	1 cut(s)	550
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
BpmI	CTGGAG	2 cut(s)	137, 483
Bpu14I	TTCGAA	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	564
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	2 cut(s)	56, 462
BseSI	GKGCMC	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	572
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	426
Bsp1286I	GDGCHC	2 cut(s)	289, 456
Bsp143I	GATC	2 cut(s)	66, 229
BspACI	CCGC	3 cut(s)	266, 315, 435
BspANI	GGCC	1 cut(s)	74
BspFNI	CGCG	1 cut(s)	186
BspPI	GGATC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	277
BspT104I	TTCGAA	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	66, 229
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	242, 332
Bst6I	CTCTTC	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	182
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	2 cut(s)	69, 232
BstMBI	GATC	2 cut(s)	66, 229
BstSLI	GKGCMC	1 cut(s)	456
BstUI	CGCG	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	74
BtgZI	GCGATG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	2 cut(s)	238, 308
CpoI	CGGWCCG	1 cut(s)	238
CspCI	CAANNNNNGTGG	2 cut(s)	502, 537
CspI	CGGWCCG	1 cut(s)	238
CviAII	CATG	3 cut(s)	70, 202, 458
CviJI	RGCY	5 cut(s)	74, 129, 287, 327, 374
CviKI_1	RGCY	5 cut(s)	74, 129, 287, 327, 374
DpnI	GATC	2 cut(s)	68, 231
DpnII	GATC	2 cut(s)	66, 229
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
EciI	GGCGGA	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	238, 308
Eco53kI	GAGCTC	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	390, 516
EcoICRI	GAGCTC	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	3 cut(s)	73, 205, 461
FalI	AAGNNNNNCTT	4 cut(s)	84, 116, 118, 150
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	3 cut(s)	69, 201, 457
FauI	CCCGC	1 cut(s)	322
FauNDI	CATATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	289
GlaI	GCGC	1 cut(s)	185
GsuI	CTGGAG	2 cut(s)	137, 483
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	572
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	3 cut(s)	73, 205, 461
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	2 cut(s)	218, 423
HpaII	CCGG	1 cut(s)	572
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	2 cut(s)	250, 290
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	2 cut(s)	242, 332
HpyCH4V	TGCA	2 cut(s)	277, 440
Hsp92II	CATG	3 cut(s)	73, 205, 461
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	66, 229
LguI	GCTCTTC	1 cut(s)	277
LpnPI	CCDG	6 cut(s)	101, 194, 223, 447, 519, 585
LweI	GCATC	1 cut(s)	550
MaeIII	GTNAC	4 cut(s)	96, 242, 332, 341
MalI	GATC	2 cut(s)	68, 231
MboI	GATC	2 cut(s)	66, 229
MboII	GAAGA	3 cut(s)	58, 265, 294
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	2 cut(s)	289, 456
MluCI	AATT	7 cut(s)	55, 141, 270, 391, 410, 476, 586
MmeI	TCCRAC	2 cut(s)	199, 257
MnlI	CCTC	5 cut(s)	34, 184, 440, 458, 545
MspI	CCGG	1 cut(s)	572
MvnI	CGCG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	2 cut(s)	66, 229
NlaIII	CATG	3 cut(s)	73, 205, 461
NmuCI	GTSAC	1 cut(s)	242
NspV	TTCGAA	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	218, 423
Psp124BI	GAGCTC	1 cut(s)	289
PspPI	GGNCC	2 cut(s)	238, 308
PsuI	RGATCY	1 cut(s)	229
Rsr2I	CGGWCCG	1 cut(s)	238
RsrII	CGGWCCG	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	277
Sau3AI	GATC	2 cut(s)	66, 229
Sau96I	GGNCC	2 cut(s)	238, 308
SduI	GDGCHC	2 cut(s)	289, 456
SetI	ASST	6 cut(s)	131, 289, 348, 376, 380, 585
SfaNI	GCATC	1 cut(s)	550
SfuI	TTCGAA	1 cut(s)	426
SinI	GGWCC	2 cut(s)	238, 308
Sse9I	AATT	7 cut(s)	55, 141, 270, 391, 410, 476, 586
SsiI	CCGC	3 cut(s)	266, 315, 435
SspI	AATATT	1 cut(s)	578
SstI	GAGCTC	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	242, 332
TaqI	TCGA	1 cut(s)	426
TasI	AATT	7 cut(s)	55, 141, 270, 391, 410, 476, 586
TfiI	GAWTC	2 cut(s)	218, 423
TseFI	GTSAC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	38, 371
TspGWI	ACGGA	2 cut(s)	23, 251
VpaK11BI	GGWCC	2 cut(s)	238, 308
XapI	RAATTY	2 cut(s)	391, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.