RLG00000009939

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001696
Physical Location & Seq
Reverse (-)
60676274 .. 60679236
2963 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009939

Sequence Viewer

Length: 1173 bp
ATGGATTCATCCCAAATATCATCATCCTTTCTTTCTTCAAATGGAACCGTTGAGTATTGCAATTCTGTCTTGGCCGCATTTGATCGGGAGCAAGATTTGTTACTTCGTATGTGTGCTAACAACAATCTCCTCTTAGCAGAAAATCTCGACGATGAAGAAGATGATGCTCAATCATGCCGGAGAGGCAAGTCTGAGGAAAGGAGTCGATCTGGTGGGTCGCTTCAAAGTCGATTTTCTAATCTATGCTTACCGGTCAGTAAACTTCGTGGTCATATTCGACAAATTGAGTACCAAAATCCAAGTGGTGCATCAGAGTCCTATATTTTCAAGAAAGCTAAGGAATCTCTCCTAGATGATTCAACTTATAAGAAGAAAAAGTTTCAATTTGACCATGTGTGGCCCATTCTAAAAAATGCTGAGAAATGGCTTGATAATGCTGCCATGACCGCTCCTAAACCTCGTAGAAGGAAGGAGTCATCTGAAGGATCTCAATCAGGTTCTCGCACATCAAGGACATCTGATACTCCATCATTTTCTGTTGATTTAAATGCAAATGAAGATGAGCAAGAGTACATCAACGATGAAGTTGCTTCACATGATCGTCCCATGGGAACGAGGATGGCAAAGATGAAAAGGAAAGCCATCGATGAGAAGAAAAAGAATTATGATAAGATCATGGCCGATAACCAAGCAATAAAAGAGTTACTTGAAAAAAGTATGCTGGAGAGATCAAGCTTCGCTTCCAAGTTTGACCATTACACGTCAAGCAAATTGGATATTCAACGTCAACGCGAAGAGAATAAAATCATGTTGACCAATTTGGATTCCATAACAGATCCAACAGACCGTGAATTCTTGAAGATGAGGAAGGCAGAAGTTATGCAAAGAAGAGCTCGTGAGTCTCAATCACAAGGATCACCACCTACTACATTTGGCTATGGTAACTTTAGTAACCTTAACCAGTTTCAAAGTGGTTCTGAAGCTACATTTCATTCTAGAAATTTTGGTAGTCCGTTACAATTTTCAAGTGGATTCGGAGGAAGTGGTGGGAGTGGAGGAGTACCACATGCTGGAGGAAGTAGCGGTGGAGGAGTGCCTGAGTACAATGAAAGTGGTGGATTCGGAACAAGCGATGGTTATGGAGGAAGTGATGCTAATCTACCGAAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

391

Amino Acids

43.37

Weight (kDa)

6.64

Isoelectric Point (pI)

60.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 125 - 292 9.6e-19 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AccB7I CCANNNNNTGG 1 cut(s) 1070
AccBSI CCGCTC 1 cut(s) 449
AccII CGCG 1 cut(s) 792
AciI CCGC 3 cut(s) 75, 447, 1083
AclWI GGATC 3 cut(s) 493, 830, 922
AcoI YGGCCR 2 cut(s) 72, 678
AcsI RAATTY 2 cut(s) 851, 1000
AcuI CTGAAG 2 cut(s) 501, 999
AfaI GTAC 4 cut(s) 290, 572, 1062, 1103
AfiI CCNNNNNNNGG 1 cut(s) 1070
AflIII ACRYGT 1 cut(s) 759
AgeI ACCGGT 1 cut(s) 250
AjiI CACGTC 1 cut(s) 762
AluBI AGCT 4 cut(s) 335, 735, 893, 983
AluI AGCT 4 cut(s) 335, 735, 893, 983
Alw21I GWGCWC 1 cut(s) 895
Alw26I GTCTC 1 cut(s) 906
AlwI GGATC 3 cut(s) 493, 830, 922
AoxI GGCC 3 cut(s) 72, 398, 678
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 2 cut(s) 851, 1000
AsiGI ACCGGT 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 399
AsuHPI GGTGA 1 cut(s) 909
BanII GRGCYC 1 cut(s) 895
BauI CACGAG 1 cut(s) 894
Bbv12I GWGCWC 1 cut(s) 895
BbvI GCAGC 1 cut(s) 424
BccI CCATC 4 cut(s) 535, 613, 650, 1127
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BcoDI GTCTC 1 cut(s) 906
BfaI CTAG 3 cut(s) 350, 996, 1171
BglI GCCNNNNNGGC 1 cut(s) 183
BisI GCNGC 2 cut(s) 75, 438
BlsI GCNGC 2 cut(s) 76, 439
BmgBI CACGTC 1 cut(s) 762
BmgT120I GGNCC 1 cut(s) 399
BmiI GGNNCC 1 cut(s) 46
BmsI GCATC 3 cut(s) 154, 317, 1141
BpmI CTGGAG 2 cut(s) 743, 1092
Bpu10I CCTNAGC 1 cut(s) 336
Bsa29I ATCGAT 1 cut(s) 645
BsaBI GATNNNNATC 2 cut(s) 490, 1155
BsaJI CCNNGG 1 cut(s) 606
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 1070
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 961
Bse8I GATNNNNATC 2 cut(s) 490, 1155
BseCI ATCGAT 1 cut(s) 645
BseDI CCNNGG 1 cut(s) 606
BseGI GGATG 3 cut(s) 8, 23, 624
BseJI GATNNNNATC 2 cut(s) 490, 1155
BseLI CCNNNNNNNGG 1 cut(s) 1070
BseMII CTCAG 3 cut(s) 183, 408, 1089
BseNI ACTGG 1 cut(s) 961
BseRI GAGGAG 3 cut(s) 119, 1071, 1104
BseXI GCAGC 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 792
BshFI GGCC 3 cut(s) 74, 400, 680
BshTI ACCGGT 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 645
BsiHKAI GWGCWC 1 cut(s) 895
BsiSI CCGG 2 cut(s) 178, 251
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 1 cut(s) 1070
BsmAI GTCTC 1 cut(s) 906
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 3 cut(s) 74, 400, 680
Bsp1286I GDGCHC 1 cut(s) 895
Bsp143I GATC 8 cut(s) 82, 206, 485, 598, 672, 728, 835, 914
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 3 cut(s) 75, 447, 1083
BspANI GGCC 3 cut(s) 74, 400, 680
BspCNI CTCAG 3 cut(s) 184, 409, 1090
BspDI ATCGAT 1 cut(s) 645
BspFNI CGCG 1 cut(s) 792
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 3 cut(s) 493, 830, 922
BspQI GCTCTTC 1 cut(s) 883
BsrBI CCGCTC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 1 cut(s) 961
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 606
BssMI GATC 8 cut(s) 82, 206, 485, 598, 672, 728, 835, 914
BssSI CACGAG 1 cut(s) 894
BssT1I CCWWGG 1 cut(s) 606
Bst2BI CACGAG 1 cut(s) 894
Bst4CI ACNGT 2 cut(s) 49, 848
Bst6I CTCTTC 2 cut(s) 789, 883
BstDEI CTNAG 5 cut(s) 133, 192, 336, 417, 1098
BstDSI CCRYGG 1 cut(s) 606
BstF5I GGATG 3 cut(s) 8, 23, 624
BstFNI CGCG 1 cut(s) 792
BstKTI GATC 8 cut(s) 85, 209, 488, 601, 675, 731, 838, 917
BstMAI GTCTC 1 cut(s) 906
BstMBI GATC 8 cut(s) 82, 206, 485, 598, 672, 728, 835, 914
BstMWI GCNNNNNNNGC 2 cut(s) 183, 446
BstNSI RCATGY 1 cut(s) 1070
BstUI CGCG 1 cut(s) 792
BstV1I GCAGC 1 cut(s) 424
BstX2I RGATCY 2 cut(s) 485, 835
BstYI RGATCY 2 cut(s) 485, 835
Bsu15I ATCGAT 1 cut(s) 645
BsuRI GGCC 3 cut(s) 74, 400, 680
BsuTUI ATCGAT 1 cut(s) 645
BtgI CCRYGG 1 cut(s) 606
BtgZI GCGATG 1 cut(s) 1146
BtrI CACGTC 1 cut(s) 762
BtsCI GGATG 3 cut(s) 8, 23, 624
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 399
ClaI ATCGAT 1 cut(s) 645
Csp6I GTAC 4 cut(s) 289, 571, 1061, 1102
CspAI ACCGGT 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 1093, 1128
CviAII CATG 8 cut(s) 174, 392, 442, 596, 607, 676, 808, 1067
CviQI GTAC 4 cut(s) 289, 571, 1061, 1102
DdeI CTNAG 5 cut(s) 133, 192, 336, 417, 1098
DpnI GATC 8 cut(s) 84, 208, 487, 600, 674, 730, 837, 916
DpnII GATC 8 cut(s) 82, 206, 485, 598, 672, 728, 835, 914
DraI TTTAAA 1 cut(s) 546
EaeI YGGCCR 2 cut(s) 72, 678
Eam1104I CTCTTC 2 cut(s) 789, 883
EarI CTCTTC 2 cut(s) 789, 883
Ecl136II GAGCTC 1 cut(s) 893
Eco130I CCWWGG 1 cut(s) 606
Eco24I GRGCYC 1 cut(s) 895
Eco53kI GAGCTC 1 cut(s) 893
Eco57I CTGAAG 2 cut(s) 501, 999
EcoICRI GAGCTC 1 cut(s) 893
EcoRI GAATTC 1 cut(s) 851
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 895
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 8 cut(s) 177, 395, 445, 599, 610, 679, 811, 1070
FalI AAGNNNNNCTT 4 cut(s) 690, 722, 724, 756
FaqI GGGAC 1 cut(s) 588
FatI CATG 8 cut(s) 173, 391, 441, 595, 606, 675, 807, 1066
Fnu4HI GCNGC 2 cut(s) 75, 438
FokI GGATG 2 cut(s) 10, 631
FriOI GRGCYC 1 cut(s) 895
Fsp4HI GCNGC 2 cut(s) 75, 438
FspBI CTAG 3 cut(s) 350, 996, 1171
GluI GCNGC 2 cut(s) 75, 438
GsuI CTGGAG 2 cut(s) 743, 1092
HaeIII GGCC 3 cut(s) 74, 400, 680
HapII CCGG 2 cut(s) 178, 251
Hin1II CATG 8 cut(s) 177, 395, 445, 599, 610, 679, 811, 1070
HincII GTYRAC 2 cut(s) 788, 813
HindII GTYRAC 2 cut(s) 788, 813
HindIII AAGCTT 1 cut(s) 733
HpaII CCGG 2 cut(s) 178, 251
HphI GGTGA 1 cut(s) 909
Hpy166II GTNNAC 3 cut(s) 260, 788, 813
Hpy188I TCNGA 7 cut(s) 193, 313, 481, 520, 979, 1037, 1124
Hpy188III TCNNGA 6 cut(s) 86, 146, 328, 856, 896, 996
Hpy8I GTNNAC 3 cut(s) 260, 788, 813
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 4 cut(s) 459, 463, 476, 862
HpyCH4III ACNGT 2 cut(s) 49, 848
HpyCH4IV ACGT 2 cut(s) 761, 784
HpyCH4V TGCA 4 cut(s) 60, 308, 551, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 446
HpyF3I CTNAG 5 cut(s) 133, 192, 336, 417, 1098
HpySE526I ACGT 2 cut(s) 761, 784
Hsp92II CATG 8 cut(s) 177, 395, 445, 599, 610, 679, 811, 1070
Kzo9I GATC 8 cut(s) 82, 206, 485, 598, 672, 728, 835, 914
LguI GCTCTTC 1 cut(s) 883
LmnI GCTCC 2 cut(s) 88, 454
LpnPI CCDG 8 cut(s) 191, 195, 264, 480, 707, 974, 1056, 1110
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 3 cut(s) 154, 317, 1141
MaeI CTAG 3 cut(s) 350, 996, 1171
MaeII ACGT 2 cut(s) 761, 784
MaeIII GTNAC 5 cut(s) 99, 702, 941, 950, 1014
MalI GATC 8 cut(s) 84, 208, 487, 600, 674, 730, 837, 916
MbiI CCGCTC 1 cut(s) 449
MboI GATC 8 cut(s) 82, 206, 485, 598, 672, 728, 835, 914
MboII GAAGA 9 cut(s) 27, 167, 170, 382, 569, 664, 806, 871, 900
MflI RGATCY 2 cut(s) 485, 835
MhlI GDGCHC 1 cut(s) 895
MluCI AATT 9 cut(s) 61, 282, 383, 661, 770, 817, 851, 1000, 1019
MlyI GAGTC 4 cut(s) 211, 323, 482, 908
MmeI TCCRAC 1 cut(s) 863
MseI TTAA 2 cut(s) 545, 957
MspI CCGG 2 cut(s) 178, 251
MvnI CGCG 1 cut(s) 792
MwoI GCNNNNNNNGC 2 cut(s) 183, 446
NcoI CCATGG 1 cut(s) 606
NdeII GATC 8 cut(s) 82, 206, 485, 598, 672, 728, 835, 914
NlaIII CATG 8 cut(s) 177, 395, 445, 599, 610, 679, 811, 1070
NlaIV GGNNCC 1 cut(s) 46
NspI RCATGY 1 cut(s) 1070
PciSI GCTCTTC 1 cut(s) 883
PcsI WCGNNNNNNNCGW 1 cut(s) 1128
PfeI GAWTC 6 cut(s) 5, 341, 356, 824, 1032, 1119
PflMI CCANNNNNTGG 1 cut(s) 1070
PinAI ACCGGT 1 cut(s) 250
PkrI GCNGC 2 cut(s) 76, 439
PleI GAGTC 4 cut(s) 210, 322, 481, 907
PpsI GAGTC 4 cut(s) 210, 322, 481, 907
PsiI TTATAA 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 895
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 399
PsuI RGATCY 2 cut(s) 485, 835
RsaI GTAC 4 cut(s) 290, 572, 1062, 1103
RsaNI GTAC 4 cut(s) 289, 571, 1061, 1102
SacI GAGCTC 1 cut(s) 895
SapI GCTCTTC 1 cut(s) 883
SaqAI TTAA 2 cut(s) 545, 957
SatI GCNGC 2 cut(s) 75, 438
Sau3AI GATC 8 cut(s) 82, 206, 485, 598, 672, 728, 835, 914
Sau96I GGNCC 1 cut(s) 399
SchI GAGTC 4 cut(s) 211, 323, 482, 908
SduI GDGCHC 1 cut(s) 895
SfaNI GCATC 3 cut(s) 154, 317, 1141
SmiI ATTTAAAT 1 cut(s) 546
Sse9I AATT 9 cut(s) 61, 282, 383, 661, 770, 817, 851, 1000, 1019
SsiI CCGC 3 cut(s) 75, 447, 1083
SspMI CTAG 3 cut(s) 350, 996, 1171
SstI GAGCTC 1 cut(s) 895
StyI CCWWGG 1 cut(s) 606
SwaI ATTTAAAT 1 cut(s) 546
TaaI ACNGT 2 cut(s) 49, 848
TaiI ACGT 2 cut(s) 764, 787
TaqI TCGA 5 cut(s) 147, 205, 229, 277, 645
TasI AATT 9 cut(s) 61, 282, 383, 661, 770, 817, 851, 1000, 1019
TatI WGTACW 2 cut(s) 570, 1101
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 6 cut(s) 5, 341, 356, 824, 1032, 1119
Tru1I TTAA 2 cut(s) 545, 957
Tru9I TTAA 2 cut(s) 545, 957
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 6 cut(s) 168, 570, 597, 644, 980, 1122
TspGWI ACGGA 1 cut(s) 1002
Van91I CCANNNNNTGG 1 cut(s) 1070
XapI RAATTY 2 cut(s) 851, 1000
XbaI TCTAGA 1 cut(s) 995
XceI RCATGY 1 cut(s) 1070
XcmI CCANNNNNNNNNTGG 2 cut(s) 299, 968
XspI CTAG 3 cut(s) 350, 996, 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.