FvH4_6g21850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001696
Physical Location & Seq
Reverse (-)
15466906 .. 15467508
603 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21850.t1

Sequence Viewer

Length: 468 bp
ATGGCAAAGATGAAAAGGAAAGCCACTAAAGAGAAGAAAAAGAGTTATGACAAGATCATGACCAACAACCAAGCGATAAAATATTTACTTGAAAAAAACATGTTGGAGAAAGCAAGCTTCGCTTCCAAGATTGAGCATTACGCGTCAAACAAATTAAATATCCAACATCAACGTGACGAGGATAGAATCATGCTAACCAATGCTGATTCCATTCACGATCCAATGGATCGTGAATTTTTGAAGATGAGAAAGGCGGAGATTATGCAGAGAAGATCTCCTACATTTCATTCTGGAAATTTTGGTAGCCCCTCATTTCTAGATTCGGTGGAAGTGGTGGCTATGAAAGATTTCCTTATGTTGGAGGAAGTAGTCGCTTTTGAACAAGTAGTGCTGAAGCTGTGCTTGAAGTCAATCAGAGTGGTGGATCCGGAACAAGTGATGATTATGGAGAAAGTGATGCTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

18.13

Weight (kDa)

9.25

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 427
AciI CCGC 1 cut(s) 254
AclWI GGATC 4 cut(s) 212, 234, 419, 432
AcsI RAATTY 2 cut(s) 233, 295
AcuI CTGAAG 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 358
AflIII ACRYGT 2 cut(s) 99, 141
AgsI TTSAA 4 cut(s) 92, 241, 380, 406
AluBI AGCT 2 cut(s) 117, 397
AluI AGCT 2 cut(s) 117, 397
AlwI GGATC 4 cut(s) 212, 234, 419, 432
Aor13HI TCCGGA 1 cut(s) 427
ApoI RAATTY 2 cut(s) 233, 295
Asp700I GAANNNNTTC 1 cut(s) 347
BamHI GGATCC 1 cut(s) 424
BarI GAAGNNNNNNTAC 2 cut(s) 262, 294
BfaI CTAG 1 cut(s) 317
BglII AGATCT 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 426
BmsI GCATC 1 cut(s) 447
BplI GAGNNNNNCTC 2 cut(s) 259, 291
BsaBI GATNNNNATC 1 cut(s) 461
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse8I GATNNNNATC 1 cut(s) 461
BseAI TCCGGA 1 cut(s) 427
BseJI GATNNNNATC 1 cut(s) 461
BseLI CCNNNNNNNGG 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 358
Bsp13I TCCGGA 1 cut(s) 427
Bsp143I GATC 5 cut(s) 54, 217, 226, 272, 424
BspACI CCGC 1 cut(s) 254
BspEI TCCGGA 1 cut(s) 427
BspFNI CGCG 1 cut(s) 143
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 426
BspPI GGATC 4 cut(s) 212, 234, 419, 432
BssMI GATC 5 cut(s) 54, 217, 226, 272, 424
BstC8I GCNNGC 1 cut(s) 115
BstFNI CGCG 1 cut(s) 143
BstKTI GATC 5 cut(s) 57, 220, 229, 275, 427
BstMBI GATC 5 cut(s) 54, 217, 226, 272, 424
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 103
BstUI CGCG 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 272, 424
BstYI RGATCY 2 cut(s) 272, 424
Cac8I GCNNGC 1 cut(s) 115
CciI TCATGA 1 cut(s) 57
CseI GACGC 1 cut(s) 132
CspCI CAANNNNNGTGG 2 cut(s) 399, 434
CviAII CATG 3 cut(s) 58, 100, 190
CviJI RGCY 5 cut(s) 23, 117, 306, 338, 397
CviKI_1 RGCY 5 cut(s) 23, 117, 306, 338, 397
DpnI GATC 5 cut(s) 56, 219, 228, 274, 426
DpnII GATC 5 cut(s) 54, 217, 226, 272, 424
EciI GGCGGA 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 413
FaeI CATG 3 cut(s) 61, 103, 193
FaiI YATR 8 cut(s) 48, 59, 101, 191, 263, 341, 356, 446
FalI AAGNNNNNCTT 6 cut(s) 106, 138, 336, 368, 386, 418
FatI CATG 3 cut(s) 57, 99, 189
FspBI CTAG 1 cut(s) 317
HapII CCGG 1 cut(s) 428
HgaI GACGC 1 cut(s) 132
Hin1II CATG 3 cut(s) 61, 103, 193
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 3 cut(s) 186, 206, 320
HpaII CCGG 1 cut(s) 428
Hpy188I TCNGA 2 cut(s) 416, 467
Hpy188III TCNNGA 6 cut(s) 58, 215, 230, 291, 317, 428
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 3 cut(s) 61, 103, 193
Kpn2I TCCGGA 1 cut(s) 427
Kzo9I GATC 5 cut(s) 54, 217, 226, 272, 424
LpnPI CCDG 2 cut(s) 276, 441
LweI GCATC 1 cut(s) 447
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 173
MalI GATC 5 cut(s) 56, 219, 228, 274, 426
MboI GATC 5 cut(s) 54, 217, 226, 272, 424
MboII GAAGA 3 cut(s) 46, 253, 282
MflI RGATCY 2 cut(s) 272, 424
MluCI AATT 3 cut(s) 152, 233, 295
MluI ACGCGT 1 cut(s) 141
MmeI TCCRAC 3 cut(s) 84, 187, 339
MnlI CCTC 3 cut(s) 172, 319, 355
MroI TCCGGA 1 cut(s) 427
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 1 cut(s) 428
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 5 cut(s) 54, 217, 226, 272, 424
NlaIII CATG 3 cut(s) 61, 103, 193
NlaIV GGNNCC 1 cut(s) 426
NmuCI GTSAC 1 cut(s) 173
NspI RCATGY 1 cut(s) 103
PagI TCATGA 1 cut(s) 57
PciI ACATGT 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 3 cut(s) 186, 206, 320
PscI ACATGT 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 426
PsuI RGATCY 2 cut(s) 272, 424
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 155
Sau3AI GATC 5 cut(s) 54, 217, 226, 272, 424
SetI ASST 3 cut(s) 119, 175, 399
SfaNI GCATC 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 3 cut(s) 152, 233, 295
SsiI CCGC 1 cut(s) 254
SspI AATATT 1 cut(s) 83
SspMI CTAG 1 cut(s) 317
TaiI ACGT 1 cut(s) 175
TasI AATT 3 cut(s) 152, 233, 295
TfiI GAWTC 3 cut(s) 186, 206, 320
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 3 cut(s) 26, 275, 356
XapI RAATTY 2 cut(s) 233, 295
XbaI TCTAGA 1 cut(s) 316
XceI RCATGY 1 cut(s) 103
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.