FvH4_2g02401

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001696
Physical Location & Seq
Forward (+)
1951206 .. 1952194
989 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02401.t1

Sequence Viewer

Length: 903 bp
ATGAATACTTCTAAGGGAAAAAATTTTACTATTGAAGAGGATCAACTCTTGTGCCACATATATCTTGATGTTAGTCAAGATCCGATACATGGTGTTAATCAAAAAAAGGATAAGATATGGGAAAGGATAACTACTCTGTGGAATCAGCAAAAGCCGCATCAATATGAAGTACGAAGCTCATATTCTCTCCAAAGTCGATTTTCTAATCTCTCATATGTTATAAGCAAATTTCGCGGTGCTGTTCGACAAGTAGAATATACCAACCCGAGTAGTGGTGCTTCTGAAATTGATATAATGACAAAGGCAAAGAAATTAATGTGGGATGATACGAGCTATAAAAAATCAAAGAAGTTTCAATTTGAGCATGTGTGGAGCATTCTCAAGGATGCTGAAAAATGGATGGACACTACTGGTATGGTATCGGCTCAGCCCCAAAGAAGAAAAAATTCATTGGAAGGAGGTCAATCGAGTTCTCACACATCTAAGTCATCAAGTACACCATCATTTAAGGTCGATTTGAATGTCGATGTTGATGCAGATGAACAAGAATTTATCAATGAAGAGTTATCATCATCCTATAGACCAATTGGAACAAAGAAAGCAAAACATAAAAGAAAAGAGGAGAATGAAAAGAAAAAACTTGCTGAGCAAATTCTCGAAGAAAACCGGCGACTAAAGGAGTTGGTAGAAAAAAACATGTCTGATAGATGTGCATTTTCTGCTAAACATGAGCAATATGCGGCTACGAAATTAGAGATCCAACGTCAGCGTGAGGATAACAAAATTATGCTCATGAGTTTGGATTCCATTTCGGATCCGAAAGATCGTGAGTATTTTGAGATGAGAAAAAATGAAATTAGGCAAAAAGAGCTCGTGAATCCCAACAACAACAATCGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

301

Amino Acids

35.17

Weight (kDa)

9.1

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 116 - 286 3.2e-23 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AccII CGCG 1 cut(s) 234
AciI CCGC 3 cut(s) 155, 234, 740
AclWI GGATC 5 cut(s) 48, 74, 751, 809, 822
AcsI RAATTY 5 cut(s) 22, 227, 445, 548, 651
AfaI GTAC 2 cut(s) 171, 496
AfiI CCNNNNNNNGG 2 cut(s) 89, 272
AflIII ACRYGT 1 cut(s) 696
AgsI TTSAA 3 cut(s) 35, 356, 520
AluBI AGCT 3 cut(s) 177, 333, 871
AluI AGCT 3 cut(s) 177, 333, 871
Alw21I GWGCWC 1 cut(s) 873
AlwI GGATC 5 cut(s) 48, 74, 751, 809, 822
Ama87I CYCGRG 1 cut(s) 265
ApoI RAATTY 5 cut(s) 22, 227, 445, 548, 651
AseI ATTAAT 1 cut(s) 314
Asp700I GAANNNNTTC 1 cut(s) 445
AvaI CYCGRG 1 cut(s) 265
BamHI GGATCC 1 cut(s) 814
BanII GRGCYC 1 cut(s) 873
BarI GAAGNNNNNNTAC 2 cut(s) 262, 294
BauI CACGAG 1 cut(s) 872
Bbv12I GWGCWC 1 cut(s) 873
BccI CCATC 2 cut(s) 394, 508
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BfmI CTRYAG 1 cut(s) 577
BisI GCNGC 2 cut(s) 155, 741
BlpI GCTNAGC 2 cut(s) 426, 645
BlsI GCNGC 2 cut(s) 156, 742
BmeT110I CYCGRG 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 816
BmsI GCATC 3 cut(s) 166, 376, 523
Bpu1102I GCTNAGC 2 cut(s) 426, 645
BpuEI CTTGAG 1 cut(s) 365
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 272
Bse118I RCCGGY 1 cut(s) 666
Bse1I ACTGG 1 cut(s) 415
BseGI GGATG 4 cut(s) 328, 391, 405, 572
BseLI CCNNNNNNNGG 2 cut(s) 89, 272
BseMII CTCAG 2 cut(s) 440, 636
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 1 cut(s) 635
Bsh1236I CGCG 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 873
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 667
BslI CCNNNNNNNGG 2 cut(s) 89, 272
BsmI GAATGC 1 cut(s) 375
BsoBI CYCGRG 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 873
Bsp143I GATC 5 cut(s) 40, 79, 756, 814, 823
Bsp1720I GCTNAGC 2 cut(s) 426, 645
BspACI CCGC 3 cut(s) 155, 234, 740
BspCNI CTCAG 2 cut(s) 439, 637
BspFNI CGCG 1 cut(s) 234
BspHI TCATGA 1 cut(s) 792
BspLI GGNNCC 1 cut(s) 816
BspPI GGATC 5 cut(s) 48, 74, 751, 809, 822
BsrFI RCCGGY 1 cut(s) 666
BsrI ACTGG 1 cut(s) 415
BssAI RCCGGY 1 cut(s) 666
BssMI GATC 5 cut(s) 40, 79, 756, 814, 823
BssSI CACGAG 1 cut(s) 872
Bst2BI CACGAG 1 cut(s) 872
Bst6I CTCTTC 2 cut(s) 30, 555
BstAPI GCANNNNNTGC 1 cut(s) 719
BstDEI CTNAG 4 cut(s) 12, 426, 483, 645
BstF5I GGATG 4 cut(s) 328, 391, 405, 572
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 5 cut(s) 43, 82, 759, 817, 826
BstMBI GATC 5 cut(s) 40, 79, 756, 814, 823
BstMWI GCNNNNNNNGC 4 cut(s) 154, 231, 719, 868
BstNSI RCATGY 2 cut(s) 368, 700
BstSFI CTRYAG 1 cut(s) 577
BstUI CGCG 1 cut(s) 234
BstX2I RGATCY 3 cut(s) 79, 756, 814
BstYI RGATCY 3 cut(s) 79, 756, 814
BtsCI GGATG 4 cut(s) 328, 391, 405, 572
CciI TCATGA 1 cut(s) 792
Cfr10I RCCGGY 1 cut(s) 666
Csp6I GTAC 2 cut(s) 170, 495
CviAII CATG 6 cut(s) 89, 365, 697, 728, 793, 900
CviJI RGCY 7 cut(s) 154, 177, 333, 425, 430, 743, 871
CviKI_1 RGCY 7 cut(s) 154, 177, 333, 425, 430, 743, 871
CviQI GTAC 2 cut(s) 170, 495
DdeI CTNAG 4 cut(s) 12, 426, 483, 645
DpnI GATC 5 cut(s) 42, 81, 758, 816, 825
DpnII GATC 5 cut(s) 40, 79, 756, 814, 823
Eam1104I CTCTTC 2 cut(s) 30, 555
EarI CTCTTC 2 cut(s) 30, 555
Ecl136II GAGCTC 1 cut(s) 871
Eco24I GRGCYC 1 cut(s) 873
Eco53kI GAGCTC 1 cut(s) 871
Eco88I CYCGRG 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 871
EcoT38I GRGCYC 1 cut(s) 873
FaeI CATG 6 cut(s) 92, 368, 700, 731, 796, 903
FatI CATG 6 cut(s) 88, 364, 696, 727, 792, 899
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 155, 741
FokI GGATG 4 cut(s) 335, 398, 412, 559
FriOI GRGCYC 1 cut(s) 873
Fsp4HI GCNGC 2 cut(s) 155, 741
GluI GCNGC 2 cut(s) 155, 741
HapII CCGG 1 cut(s) 667
Hin1II CATG 6 cut(s) 92, 368, 700, 731, 796, 903
HinfI GANTC 3 cut(s) 142, 803, 877
HpaII CCGG 1 cut(s) 667
Hpy166II GTNNAC 1 cut(s) 497
Hpy188I TCNGA 5 cut(s) 84, 283, 703, 814, 819
Hpy188III TCNNGA 6 cut(s) 65, 77, 656, 793, 827, 874
Hpy8I GTNNAC 1 cut(s) 497
HpyAV CCTTC 1 cut(s) 449
HpyCH4IV ACGT 1 cut(s) 763
HpyCH4V TGCA 2 cut(s) 536, 713
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 231, 719, 868
HpyF3I CTNAG 4 cut(s) 12, 426, 483, 645
HpySE526I ACGT 1 cut(s) 763
Hsp92II CATG 6 cut(s) 92, 368, 700, 731, 796, 903
Kzo9I GATC 5 cut(s) 40, 79, 756, 814, 823
LmnI GCTCC 1 cut(s) 372
LpnPI CCDG 2 cut(s) 396, 680
LweI GCATC 3 cut(s) 166, 376, 523
MaeII ACGT 1 cut(s) 763
MalI GATC 5 cut(s) 42, 81, 758, 816, 825
MboI GATC 5 cut(s) 40, 79, 756, 814, 823
MboII GAAGA 4 cut(s) 47, 450, 572, 671
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 3 cut(s) 79, 756, 814
MhlI GDGCHC 1 cut(s) 873
MmeI TCCRAC 1 cut(s) 784
MnlI CCTC 4 cut(s) 31, 452, 613, 766
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 3 cut(s) 96, 314, 507
MslI CAYNNNNRTG 1 cut(s) 162
MspI CCGG 1 cut(s) 667
MunI CAATTG 1 cut(s) 585
Mva1269I GAATGC 1 cut(s) 375
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 4 cut(s) 154, 231, 719, 868
NdeI CATATG 1 cut(s) 214
NdeII GATC 5 cut(s) 40, 79, 756, 814, 823
NlaIII CATG 6 cut(s) 92, 368, 700, 731, 796, 903
NlaIV GGNNCC 1 cut(s) 816
NspI RCATGY 2 cut(s) 368, 700
PagI TCATGA 1 cut(s) 792
PciI ACATGT 1 cut(s) 696
PctI GAATGC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 3 cut(s) 142, 803, 877
PkrI GCNGC 2 cut(s) 156, 742
PscI ACATGT 1 cut(s) 696
PshBI ATTAAT 1 cut(s) 314
PsiI TTATAA 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 873
PspN4I GGNNCC 1 cut(s) 816
PsuI RGATCY 3 cut(s) 79, 756, 814
RsaI GTAC 2 cut(s) 171, 496
RsaNI GTAC 2 cut(s) 170, 495
RseI CAYNNNNRTG 1 cut(s) 162
SacI GAGCTC 1 cut(s) 873
SaqAI TTAA 3 cut(s) 96, 314, 507
SatI GCNGC 2 cut(s) 155, 741
Sau3AI GATC 5 cut(s) 40, 79, 756, 814, 823
SduI GDGCHC 1 cut(s) 873
SetI ASST 6 cut(s) 179, 335, 463, 513, 766, 873
SfaNI GCATC 3 cut(s) 166, 376, 523
SfcI CTRYAG 1 cut(s) 577
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SsiI CCGC 3 cut(s) 155, 234, 740
SstI GAGCTC 1 cut(s) 873
TaiI ACGT 1 cut(s) 766
TaqI TCGA 6 cut(s) 196, 244, 467, 513, 525, 657
TatI WGTACW 1 cut(s) 494
TauI GCSGC 2 cut(s) 157, 743
TfiI GAWTC 3 cut(s) 142, 803, 877
Tru1I TTAA 3 cut(s) 96, 314, 507
Tru9I TTAA 3 cut(s) 96, 314, 507
TspDTI ATGAA 7 cut(s) 17, 180, 438, 555, 573, 642, 867
VspI ATTAAT 1 cut(s) 314
XapI RAATTY 5 cut(s) 22, 227, 445, 548, 651
XceI RCATGY 2 cut(s) 368, 700
XmnI GAANNNNTTC 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.