RLG00000001802

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001696
Physical Location & Seq
Reverse (-)
20966981 .. 20970114
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001802

Sequence Viewer

Length: 1101 bp
ATGGATTCATCCCAAATATCATCATCCTCTCTTTCTTCAAATGGAACCGTTGCGGATTGCAATTCTGTCTTGGCCGCATTTGGTCGGGAGCAAGATTTGTTACTTCGTATGTGTGCTAACAACAATCTCCTCTTAGCAGAAAATCTCGACGATGAAGAAGATGATGCTCGATCATTCCGGAGAGGCAAGTCTGAGGAAAGGAGTCGATCTGGTGGGTCGCTTCAAAGTCGATTTTCTGATCTATGCTTATCGTTCAAGAAAGCTAAGGAATCTCTCCTAGATTATTCAACTTATAAGAAGAAAAAGTTTCAATTTGACCATGTGTGGCCCATTCTAAAAAATGCTGAGAAATGGCTTGATAATGCTGCCATGACCGTTCCTAAACCTCGTAGAAGGAAGGAGTCATCTAAAGGATCTCAATCAGGTTCTCGCACACTAAGGACATCTGATACTCCATCGTTTTCTGTTGATTTAAATGCAGATGAAGATGAGCAAGAGTACATCAATGATGAAGTTGCTTCACATGATCGTCCCATGGGAACGAGGATGGCAAAGATGAAAAGGAAAGCCACCAATGAGAAGAAAAAGAATTATGATAAGATCATGGCCGATAACCAAGCAATAAAAGAGTTACTTGAAAAAAGTATGTTGGAGAGATCAAGCTTCGCTTCCAAGTTTGACCATTACACGTCAAGCAAATTGGATATTCAACGTCAGCGCGAAGAGAATAAAATCATGCTGACCAATTTGGATTCTATAACAGATCCAACAGACCGTGAATTCTTGAAGATAAGGAAGGCAGAAGTTATGCAAAGAAGAGCTCGTGAGTCTCAATCACAAGGATCACCACTTACTACATTTGGCTATGGTAACTTTGGTAACCTGAACCAGTTTCAAAGTGGTTCTGAAGCTACATTTCATTCTGGAAATTTTGGTAGTCCTTTACAATTTTCAAGTGGATTTGGAGGAAGTGGTAGGAATGGAGGAGTACCACATGCTGGAGGAAGTAGCGGTGGAGGAGTGCCTGAGTACAATGAAAGTGGTGGATTCGGAACAAGCGATGGTTATGGAGGAAGTGATGCTAATCTACCGGAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

367

Amino Acids

40.58

Weight (kDa)

6.99

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 101 - 268 1.3e-18 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AccB7I CCANNNNNTGG 1 cut(s) 998
AccII CGCG 1 cut(s) 720
AccIII TCCGGA 1 cut(s) 177
AciI CCGC 3 cut(s) 53, 75, 1011
AclWI GGATC 3 cut(s) 421, 758, 850
AcoI YGGCCR 2 cut(s) 72, 606
AcsI RAATTY 2 cut(s) 779, 928
AcuI CTGAAG 1 cut(s) 927
AfaI GTAC 3 cut(s) 500, 990, 1031
AfiI CCNNNNNNNGG 1 cut(s) 998
AflIII ACRYGT 1 cut(s) 687
AjiI CACGTC 1 cut(s) 690
AluBI AGCT 4 cut(s) 263, 663, 821, 911
AluI AGCT 4 cut(s) 263, 663, 821, 911
Alw21I GWGCWC 1 cut(s) 823
Alw26I GTCTC 1 cut(s) 834
AlwI GGATC 3 cut(s) 421, 758, 850
Aor13HI TCCGGA 1 cut(s) 177
AoxI GGCC 3 cut(s) 72, 326, 606
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 2 cut(s) 779, 928
AspLEI GCGC 1 cut(s) 720
AspS9I GGNCC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 837
BanII GRGCYC 1 cut(s) 823
BauI CACGAG 1 cut(s) 822
Bbv12I GWGCWC 1 cut(s) 823
BbvI GCAGC 1 cut(s) 352
BccI CCATC 3 cut(s) 463, 541, 1055
BcoDI GTCTC 1 cut(s) 834
BfaI CTAG 2 cut(s) 278, 1099
BisI GCNGC 2 cut(s) 75, 366
BlsI GCNGC 2 cut(s) 76, 367
BmgBI CACGTC 1 cut(s) 690
BmgT120I GGNCC 1 cut(s) 327
BmiI GGNNCC 1 cut(s) 46
BmsI GCATC 2 cut(s) 154, 1069
BpmI CTGGAG 1 cut(s) 1020
Bpu10I CCTNAGC 1 cut(s) 264
BsaBI GATNNNNATC 2 cut(s) 418, 1083
BsaJI CCNNGG 1 cut(s) 534
BsaWI WCCGGW 2 cut(s) 177, 1090
Bsc4I CCNNNNNNNGG 1 cut(s) 998
Bse1I ACTGG 1 cut(s) 889
Bse8I GATNNNNATC 2 cut(s) 418, 1083
BseAI TCCGGA 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 3 cut(s) 8, 23, 552
BseJI GATNNNNATC 2 cut(s) 418, 1083
BseLI CCNNNNNNNGG 1 cut(s) 998
BseMII CTCAG 3 cut(s) 183, 336, 1017
BseNI ACTGG 1 cut(s) 889
BseRI GAGGAG 3 cut(s) 119, 999, 1032
BseXI GCAGC 1 cut(s) 352
Bsh1236I CGCG 1 cut(s) 720
BshFI GGCC 3 cut(s) 74, 328, 608
BsiHKAI GWGCWC 1 cut(s) 823
BsiSI CCGG 2 cut(s) 178, 1091
BslFI GGGAC 1 cut(s) 516
BslI CCNNNNNNNGG 1 cut(s) 998
BsmAI GTCTC 1 cut(s) 834
BsmFI GGGAC 1 cut(s) 516
BsnI GGCC 3 cut(s) 74, 328, 608
Bsp1286I GDGCHC 1 cut(s) 823
Bsp13I TCCGGA 1 cut(s) 177
Bsp143I GATC 9 cut(s) 170, 206, 238, 413, 526, 600, 656, 763, 842
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 3 cut(s) 53, 75, 1011
BspANI GGCC 3 cut(s) 74, 328, 608
BspCNI CTCAG 3 cut(s) 184, 337, 1018
BspEI TCCGGA 1 cut(s) 177
BspFNI CGCG 1 cut(s) 720
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 3 cut(s) 421, 758, 850
BspQI GCTCTTC 1 cut(s) 811
BsrI ACTGG 1 cut(s) 889
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 9 cut(s) 170, 206, 238, 413, 526, 600, 656, 763, 842
BssSI CACGAG 1 cut(s) 822
BssT1I CCWWGG 1 cut(s) 534
Bst2BI CACGAG 1 cut(s) 822
Bst4CI ACNGT 3 cut(s) 49, 376, 776
Bst6I CTCTTC 2 cut(s) 717, 811
BstDEI CTNAG 6 cut(s) 133, 192, 264, 345, 437, 1026
BstDSI CCRYGG 1 cut(s) 534
BstEII GGTNACC 1 cut(s) 878
BstF5I GGATG 3 cut(s) 8, 23, 552
BstFNI CGCG 1 cut(s) 720
BstHHI GCGC 1 cut(s) 720
BstKTI GATC 9 cut(s) 173, 209, 241, 416, 529, 603, 659, 766, 845
BstMAI GTCTC 1 cut(s) 834
BstMBI GATC 9 cut(s) 170, 206, 238, 413, 526, 600, 656, 763, 842
BstNSI RCATGY 1 cut(s) 998
BstPI GGTNACC 1 cut(s) 878
BstUI CGCG 1 cut(s) 720
BstV1I GCAGC 1 cut(s) 352
BstX2I RGATCY 2 cut(s) 413, 763
BstYI RGATCY 2 cut(s) 413, 763
BsuRI GGCC 3 cut(s) 74, 328, 608
BtgI CCRYGG 1 cut(s) 534
BtgZI GCGATG 1 cut(s) 1074
BtrI CACGTC 1 cut(s) 690
BtsCI GGATG 3 cut(s) 8, 23, 552
CfoI GCGC 1 cut(s) 720
Cfr13I GGNCC 1 cut(s) 327
Csp6I GTAC 3 cut(s) 499, 989, 1030
CspCI CAANNNNNGTGG 2 cut(s) 1021, 1056
CviAII CATG 7 cut(s) 320, 370, 524, 535, 604, 736, 995
CviQI GTAC 3 cut(s) 499, 989, 1030
DdeI CTNAG 6 cut(s) 133, 192, 264, 345, 437, 1026
DpnI GATC 9 cut(s) 172, 208, 240, 415, 528, 602, 658, 765, 844
DpnII GATC 9 cut(s) 170, 206, 238, 413, 526, 600, 656, 763, 842
DraI TTTAAA 1 cut(s) 474
EaeI YGGCCR 2 cut(s) 72, 606
Eam1104I CTCTTC 2 cut(s) 717, 811
EarI CTCTTC 2 cut(s) 717, 811
Ecl136II GAGCTC 1 cut(s) 821
Eco130I CCWWGG 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 823
Eco53kI GAGCTC 1 cut(s) 821
Eco57I CTGAAG 1 cut(s) 927
Eco91I GGTNACC 1 cut(s) 878
EcoICRI GAGCTC 1 cut(s) 821
EcoO65I GGTNACC 1 cut(s) 878
EcoRI GAATTC 1 cut(s) 779
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 823
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 7 cut(s) 323, 373, 527, 538, 607, 739, 998
FalI AAGNNNNNCTT 4 cut(s) 618, 650, 652, 684
FaqI GGGAC 1 cut(s) 516
FatI CATG 7 cut(s) 319, 369, 523, 534, 603, 735, 994
Fnu4HI GCNGC 2 cut(s) 75, 366
FokI GGATG 2 cut(s) 10, 559
FriOI GRGCYC 1 cut(s) 823
Fsp4HI GCNGC 2 cut(s) 75, 366
FspBI CTAG 2 cut(s) 278, 1099
GlaI GCGC 1 cut(s) 719
GluI GCNGC 2 cut(s) 75, 366
GsuI CTGGAG 1 cut(s) 1020
HaeIII GGCC 3 cut(s) 74, 328, 608
HapII CCGG 2 cut(s) 178, 1091
HhaI GCGC 1 cut(s) 720
Hin1II CATG 7 cut(s) 323, 373, 527, 538, 607, 739, 998
Hin6I GCGC 1 cut(s) 718
HinP1I GCGC 1 cut(s) 718
HindIII AAGCTT 1 cut(s) 661
HinfI GANTC 7 cut(s) 5, 202, 269, 401, 752, 827, 1047
HpaII CCGG 2 cut(s) 178, 1091
HphI GGTGA 1 cut(s) 837
Hpy188I TCNGA 5 cut(s) 193, 238, 448, 907, 1052
Hpy188III TCNNGA 7 cut(s) 86, 146, 178, 256, 784, 824, 924
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 387, 391, 790
HpyCH4III ACNGT 3 cut(s) 49, 376, 776
HpyCH4IV ACGT 2 cut(s) 689, 712
HpyCH4V TGCA 3 cut(s) 60, 479, 811
HpyF3I CTNAG 6 cut(s) 133, 192, 264, 345, 437, 1026
HpySE526I ACGT 2 cut(s) 689, 712
Hsp92II CATG 7 cut(s) 323, 373, 527, 538, 607, 739, 998
HspAI GCGC 1 cut(s) 718
Kpn2I TCCGGA 1 cut(s) 177
Kzo9I GATC 9 cut(s) 170, 206, 238, 413, 526, 600, 656, 763, 842
LguI GCTCTTC 1 cut(s) 811
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 8 cut(s) 191, 195, 408, 896, 902, 909, 984, 1038
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 2 cut(s) 154, 1069
MaeI CTAG 2 cut(s) 278, 1099
MaeII ACGT 2 cut(s) 689, 712
MaeIII GTNAC 4 cut(s) 99, 630, 869, 878
MalI GATC 9 cut(s) 172, 208, 240, 415, 528, 602, 658, 765, 844
MboI GATC 9 cut(s) 170, 206, 238, 413, 526, 600, 656, 763, 842
MboII GAAGA 9 cut(s) 27, 167, 170, 310, 497, 592, 734, 799, 828
MflI RGATCY 2 cut(s) 413, 763
MhlI GDGCHC 1 cut(s) 823
MluCI AATT 8 cut(s) 61, 311, 589, 698, 745, 779, 928, 947
MlyI GAGTC 3 cut(s) 211, 410, 836
MmeI TCCRAC 2 cut(s) 630, 791
MroI TCCGGA 1 cut(s) 177
MseI TTAA 1 cut(s) 473
MspI CCGG 2 cut(s) 178, 1091
MvnI CGCG 1 cut(s) 720
NcoI CCATGG 1 cut(s) 534
NdeII GATC 9 cut(s) 170, 206, 238, 413, 526, 600, 656, 763, 842
NlaIII CATG 7 cut(s) 323, 373, 527, 538, 607, 739, 998
NlaIV GGNNCC 1 cut(s) 46
NspI RCATGY 1 cut(s) 998
PciSI GCTCTTC 1 cut(s) 811
PcsI WCGNNNNNNNCGW 1 cut(s) 1056
PfeI GAWTC 4 cut(s) 5, 269, 752, 1047
PflMI CCANNNNNTGG 1 cut(s) 998
PkrI GCNGC 2 cut(s) 76, 367
PleI GAGTC 3 cut(s) 210, 409, 835
PpsI GAGTC 3 cut(s) 210, 409, 835
PsiI TTATAA 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 823
PspEI GGTNACC 1 cut(s) 878
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 327
PsuI RGATCY 2 cut(s) 413, 763
RsaI GTAC 3 cut(s) 500, 990, 1031
RsaNI GTAC 3 cut(s) 499, 989, 1030
SacI GAGCTC 1 cut(s) 823
SapI GCTCTTC 1 cut(s) 811
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 2 cut(s) 75, 366
Sau3AI GATC 9 cut(s) 170, 206, 238, 413, 526, 600, 656, 763, 842
Sau96I GGNCC 1 cut(s) 327
SchI GAGTC 3 cut(s) 211, 410, 836
SduI GDGCHC 1 cut(s) 823
SetI ASST 9 cut(s) 265, 388, 427, 665, 692, 715, 823, 885, 913
SfaNI GCATC 2 cut(s) 154, 1069
SmiI ATTTAAAT 1 cut(s) 474
Sse9I AATT 8 cut(s) 61, 311, 589, 698, 745, 779, 928, 947
SsiI CCGC 3 cut(s) 53, 75, 1011
SspMI CTAG 2 cut(s) 278, 1099
SstI GAGCTC 1 cut(s) 823
StyI CCWWGG 1 cut(s) 534
SwaI ATTTAAAT 1 cut(s) 474
TaaI ACNGT 3 cut(s) 49, 376, 776
TaiI ACGT 2 cut(s) 692, 715
TaqI TCGA 4 cut(s) 147, 169, 205, 229
TasI AATT 8 cut(s) 61, 311, 589, 698, 745, 779, 928, 947
TatI WGTACW 2 cut(s) 498, 1029
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 4 cut(s) 5, 269, 752, 1047
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TseI GCWGC 1 cut(s) 365
TspDTI ATGAA 6 cut(s) 168, 498, 525, 572, 908, 1050
Van91I CCANNNNNTGG 1 cut(s) 998
XapI RAATTY 2 cut(s) 779, 928
XceI RCATGY 1 cut(s) 998
XcmI CCANNNNNNNNNTGG 1 cut(s) 896
XspI CTAG 2 cut(s) 278, 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.